RchiOBHm_Chr4g0438611

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
61229886 .. 61234290
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40673

Sequence Viewer

Length: 1674 bp
ATGCCTCTTCTGGTATGGGAACGTGTGAACTCAGGACTCCCCAATTCCTCATTCCATGTTTGCCACTTTCCCCATAAATTGAAAAAGCTACCATCTTTGATCTTTCTCTCTTTGGCCGTTTTGGGATTCCCCACCCACCATTTTATGCCTCTTTCCTTAACTTCCCACTATGGGGGGCAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTTATCGGAGTCTGAGTCGGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGTATGAAGGCGCAGTAAAAGAGGATGGGAGGGGGCCTTCTGTATGGGACATTTTTTCACACACTTTTGGTAAAATAACTGATTTCAGTAATGCAGATGTTGCTGTGGATCAGTATCACCTTTATGATGGAGATGTGCAACTTATGAAGGATATGGGAATGGATGCTTATAGGTTTTCGATATCCTGGTCTCGGATTTTCCCCAATGGAACGGGGCAAATTAATCAGGCAGGGGTTGATCACTACAATAAACTCATCAATTCATTGCTAGCAAAAGGAATTGAACCGTACGTAACCCTCTACCACTGGGATCTTCCTCAAGCCTTGGAAGACAGATACATTGGGTGGCTTGACGCTCAAATCATAAAGGACTTTGCAGTATATGCGGAGACATGCTTTCAGAAATTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACACACATTTGCTGTGCAAGGATATGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTATCCTACTGCACCTTTTCTGTAGGGCCGGAAACTCTGCGACTGAGCCTTACATAGTTGCTCACAATGTCATCCTTTCTCATGCAACTGTTGCCGACATTTACAGGAAAAAGTATAAGTCAAAACAAAAAGGATCAATTGGGGCATCATTTGATGTTATTTGGTATCGATCGGCAACAAACTCCACAGCAGACATTGAAGCAACTCAGAGAGCCCAAGATTTTCAGCTTGGATGGTTTCTTGACCCATTTATGTTTGGGAATTATCCATTCTCTATGAGAAGTAGAGTTGGAAGCCGGCTGCCAAAGTTTTCCAAATCTGAGTCTACTTTAATCAAGGGGTCATTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGCCAGTAACGATTCTATAGTCAGACTACTGAATGACTCTCTATCAGACTCTGGTGCCATTACCCTTCCTTTCAAAGATGGGAAACCTATTGGAGATAAGGCAAATTCGATATGGTTATACATAGTGCCTGAGGGGATGAGAAGCTTAATGAACTACATCAAGCAAAAGTATGGCAATCCTCCTGTGATGATCACTGAGAATGGCATGGATGACCCGAATAGCCCATTCATTTCCCTCAAGGATGCTCTAAAGGACAAGAAAAGGATCAATTACCACCGTGACTATTTGTCAAACTTGCTAGCTTCAATCAAAGAAGATGGGTGCAATGTGAACGGTTATTTTGCATGGTCTCTACTGGATAATTGGGAGTGGGCTGCGGGATACACTTCAAGATTTGGTCTCTATTTTATTGACTATAAGGACAAGCTCAAGAGATACCCTAAGGACTCTGTTCAATGGTTCAAGAACTTCTTAACTTCTACTTGA

Protein Analysis

557

Amino Acids

63.14

Weight (kDa)

8.28

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 86 - 555 1.2e-157 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 790, 1241
AccI GTMKAC 1 cut(s) 1130
AciI CCGC 2 cut(s) 689, 1565
AclWI GGATC 5 cut(s) 420, 621, 740, 946, 1460
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 707, 1291
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 3 cut(s) 171, 172, 495
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 9 cut(s) 82, 587, 742, 1004, 1261, 1494, 1578, 1643, 1651
AhdI GACNNNNNGTC 1 cut(s) 1474
AjnI CCWGG 3 cut(s) 488, 786, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 6 cut(s) 88, 261, 1033, 1332, 1490, 1615
AluI AGCT 6 cut(s) 88, 261, 1033, 1332, 1490, 1615
Alw26I GTCTC 5 cut(s) 498, 686, 788, 1542, 1592
AlwI GGATC 5 cut(s) 420, 621, 740, 946, 1460
AlwNI CAGNNNCTG 1 cut(s) 1238
AoxI GGCC 3 cut(s) 114, 338, 831
ApeKI GCWGC 3 cut(s) 258, 1105, 1562
ApoI RAATTY 2 cut(s) 707, 1291
AseI ATTAAT 2 cut(s) 525, 1167
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 338, 831
AsuHPI GGTGA 4 cut(s) 223, 413, 725, 733
AsuNHI GCTAGC 2 cut(s) 571, 1486
AxyI CCTNAGG 2 cut(s) 1317, 1629
BanI GGYRCC 2 cut(s) 790, 1241
BanII GRGCYC 1 cut(s) 1021
BbsI GAAGAC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 270, 1092, 1549
BccI CCATC 6 cut(s) 100, 323, 425, 1032, 1259, 1499
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 3 cut(s) 490, 788, 795
BciVI GTATCC 1 cut(s) 1562
BclI TGATCA 2 cut(s) 541, 1377
BcoDI GTCTC 5 cut(s) 498, 686, 788, 1542, 1592
BfaI CTAG 2 cut(s) 572, 1487
BfmI CTRYAG 2 cut(s) 826, 1203
BfuI GTATCC 1 cut(s) 1562
BisI GCNGC 3 cut(s) 259, 1106, 1563
BlsI GCNGC 3 cut(s) 260, 1107, 1564
Bme1390I CCNGG 3 cut(s) 490, 788, 795
BmeRI GACNNNNNGTC 1 cut(s) 1474
BmgT120I GGNCC 2 cut(s) 338, 831
BmiI GGNNCC 3 cut(s) 339, 792, 1243
BmrFI CCNGG 3 cut(s) 490, 788, 795
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 4 cut(s) 457, 791, 959, 1420
BmtI GCTAGC 2 cut(s) 575, 1490
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 770
BpuEI CTTGAG 3 cut(s) 606, 1409, 1601
Bsa29I ATCGAT 1 cut(s) 973
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 4 cut(s) 498, 788, 1542, 1592
BsaJI CCNNGG 1 cut(s) 627
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 172, 495
Bse118I RCCGGY 1 cut(s) 1101
Bse1I ACTGG 5 cut(s) 304, 614, 734, 1191, 1548
Bse21I CCTNAGG 2 cut(s) 1317, 1629
Bse3DI GCAATG 3 cut(s) 186, 566, 1519
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 3 cut(s) 490, 788, 795
BseCI ATCGAT 1 cut(s) 973
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 7 cut(s) 334, 472, 876, 1043, 1329, 1402, 1435
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 171, 172, 495
BseMI GCAATG 3 cut(s) 186, 566, 1519
BseMII CTCAG 7 cut(s) 45, 228, 840, 1025, 1116, 1308, 1374
BseNI ACTGG 5 cut(s) 304, 614, 734, 1191, 1548
BseXI GCAGC 3 cut(s) 270, 1092, 1549
BsgI GTGCAG 1 cut(s) 800
Bsh1285I CGRYCG 1 cut(s) 977
BshFI GGCC 3 cut(s) 116, 340, 833
BshNI GGYRCC 2 cut(s) 790, 1241
BshVI ATCGAT 1 cut(s) 973
BsiEI CGRYCG 1 cut(s) 977
BsiSI CCGG 2 cut(s) 834, 1102
BsiWI CGTACG 1 cut(s) 591
BslFI GGGAC 2 cut(s) 298, 365
BslI CCNNNNNNNGG 3 cut(s) 171, 172, 495
BsmAI GTCTC 5 cut(s) 498, 686, 788, 1542, 1592
BsmFI GGGAC 2 cut(s) 298, 365
BsnI GGCC 3 cut(s) 116, 340, 833
Bso31I GGTCTC 4 cut(s) 498, 788, 1542, 1592
Bsp1286I GDGCHC 1 cut(s) 1021
Bsp143I GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
BspACI CCGC 2 cut(s) 689, 1565
BspANI GGCC 3 cut(s) 116, 340, 833
BspCNI CTCAG 7 cut(s) 44, 229, 841, 1024, 1117, 1309, 1375
BspDI ATCGAT 1 cut(s) 973
BspLI GGNNCC 3 cut(s) 339, 792, 1243
BspOI GCTAGC 2 cut(s) 575, 1490
BspPI GGATC 5 cut(s) 420, 621, 740, 946, 1460
BspT107I GGYRCC 2 cut(s) 790, 1241
BspTNI GGTCTC 4 cut(s) 498, 788, 1542, 1592
BsrDI GCAATG 3 cut(s) 186, 566, 1519
BsrFI RCCGGY 1 cut(s) 1101
BsrI ACTGG 5 cut(s) 304, 614, 734, 1191, 1548
BssAI RCCGGY 1 cut(s) 1101
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 3 cut(s) 490, 788, 795
Bst4CI ACNGT 4 cut(s) 591, 895, 1466, 1523
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 3 cut(s) 404, 686, 896
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 3 cut(s) 573, 1103, 1488
BstDEI CTNAG 8 cut(s) 31, 237, 849, 1011, 1125, 1317, 1383, 1629
BstF5I GGATG 7 cut(s) 334, 472, 876, 1043, 1329, 1402, 1435
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 9 cut(s) 102, 415, 544, 616, 735, 941, 977, 1380, 1455
BstMAI GTCTC 5 cut(s) 498, 686, 788, 1542, 1592
BstMBI GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
BstMCI CGRYCG 1 cut(s) 977
BstMWI GCNNNNNNNGC 4 cut(s) 296, 404, 686, 896
BstNI CCWGG 3 cut(s) 490, 788, 795
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 488, 786, 793
BstSFI CTRYAG 2 cut(s) 826, 1203
BstSNI TACGTA 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 270, 1092, 1549
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
Bsu15I ATCGAT 1 cut(s) 973
Bsu36I CCTNAGG 2 cut(s) 1317, 1629
BsuI GTATCC 1 cut(s) 1562
BsuRI GGCC 3 cut(s) 116, 340, 833
BsuTUI ATCGAT 1 cut(s) 973
BtsCI GGATG 7 cut(s) 334, 472, 876, 1043, 1329, 1402, 1435
BtsIMutI CAGTG 3 cut(s) 607, 727, 1380
Cac8I GCNNGC 3 cut(s) 573, 1103, 1488
CaiI CAGNNNCTG 1 cut(s) 1238
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 1101
Cfr13I GGNCC 2 cut(s) 338, 831
ClaI ATCGAT 1 cut(s) 973
CseI GACGC 1 cut(s) 665
Csp6I GTAC 1 cut(s) 592
CviAII CATG 5 cut(s) 56, 696, 887, 1393, 1533
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 8 cut(s) 31, 237, 849, 1011, 1125, 1317, 1383, 1629
DpnI GATC 9 cut(s) 101, 414, 543, 615, 734, 940, 976, 1379, 1454
DpnII GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
DriI GACNNNNNGTC 1 cut(s) 1474
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 1474
EarI CTCTTC 1 cut(s) 12
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 1021
Eco31I GGTCTC 4 cut(s) 498, 788, 1542, 1592
Eco32I GATATC 1 cut(s) 486
Eco81I CCTNAGG 2 cut(s) 1317, 1629
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 3 cut(s) 488, 786, 793
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 1021
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 5 cut(s) 59, 699, 890, 1396, 1536
FalI AAGNNNNNCTT 1 cut(s) 1643
FaqI GGGAC 2 cut(s) 298, 365
FatI CATG 5 cut(s) 55, 695, 886, 1392, 1532
FauI CCCGC 1 cut(s) 1558
FbaI TGATCA 2 cut(s) 541, 1377
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 3 cut(s) 259, 1106, 1563
FokI GGATG 7 cut(s) 341, 479, 863, 1050, 1336, 1409, 1442
FriOI GRGCYC 1 cut(s) 1021
Fsp4HI GCNGC 3 cut(s) 259, 1106, 1563
FspBI CTAG 2 cut(s) 572, 1487
GlaI GCGC 1 cut(s) 316
GluI GCNGC 3 cut(s) 259, 1106, 1563
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 3 cut(s) 116, 340, 833
HapII CCGG 2 cut(s) 834, 1102
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 317
Hin1II CATG 5 cut(s) 59, 699, 890, 1396, 1536
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 1330
HinfI GANTC 9 cut(s) 36, 126, 233, 239, 1127, 1199, 1223, 1235, 1634
HpaII CCGG 2 cut(s) 834, 1102
HphI GGTGA 4 cut(s) 223, 413, 725, 733
Hpy166II GTNNAC 3 cut(s) 28, 1131, 1519
Hpy188I TCNGA 9 cut(s) 232, 238, 244, 498, 705, 1014, 1126, 1211, 1234
Hpy188III TCNNGA 5 cut(s) 33, 1046, 1578, 1618, 1651
Hpy8I GTNNAC 3 cut(s) 28, 1131, 1519
HpyAV CCTTC 6 cut(s) 305, 310, 351, 445, 1192, 1262
HpyCH4III ACNGT 4 cut(s) 591, 895, 1466, 1523
HpyCH4IV ACGT 2 cut(s) 22, 594
HpyCH4V TGCA 8 cut(s) 398, 442, 680, 766, 817, 890, 1512, 1532
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 404, 686, 896
HpyF3I CTNAG 8 cut(s) 31, 237, 849, 1011, 1125, 1317, 1383, 1629
HpySE526I ACGT 2 cut(s) 22, 594
Hsp92II CATG 5 cut(s) 59, 699, 890, 1396, 1536
HspAI GCGC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 1101
KroNI GCCGGC 1 cut(s) 1103
Ksp22I TGATCA 2 cut(s) 541, 1377
Kzo9I GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
Lsp1109I GCAGC 3 cut(s) 270, 1092, 1549
LweI GCATC 4 cut(s) 457, 791, 959, 1420
MaeI CTAG 2 cut(s) 572, 1487
MaeII ACGT 2 cut(s) 22, 594
MaeIII GTNAC 4 cut(s) 595, 713, 1193, 1466
MalI GATC 9 cut(s) 101, 414, 543, 615, 734, 940, 976, 1379, 1454
MboI GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
MboII GAAGA 5 cut(s) 285, 608, 644, 810, 1514
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 1021
MlyI GAGTC 7 cut(s) 30, 242, 248, 1136, 1217, 1229, 1628
MmeI TCCRAC 2 cut(s) 222, 1075
MroNI GCCGGC 1 cut(s) 1101
MseI TTAA 7 cut(s) 158, 249, 525, 1136, 1167, 1334, 1661
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 2 cut(s) 834, 1102
MspR9I CCNGG 3 cut(s) 490, 788, 795
MunI CAATTG 1 cut(s) 942
MvaI CCWGG 3 cut(s) 490, 788, 795
MwoI GCNNNNNNNGC 4 cut(s) 296, 404, 686, 896
NaeI GCCGGC 1 cut(s) 1103
NdeII GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
NgoMIV GCCGGC 1 cut(s) 1101
NheI GCTAGC 2 cut(s) 571, 1486
NlaIII CATG 5 cut(s) 59, 699, 890, 1396, 1536
NlaIV GGNNCC 3 cut(s) 339, 792, 1243
NmuCI GTSAC 2 cut(s) 713, 1466
NspI RCATGY 1 cut(s) 699
PdiI GCCGGC 1 cut(s) 1103
PfeI GAWTC 2 cut(s) 126, 1199
Pfl23II CGTACG 1 cut(s) 591
PkrI GCNGC 3 cut(s) 260, 1107, 1564
Ple19I CGATCG 1 cut(s) 977
PleI GAGTC 7 cut(s) 30, 241, 247, 1135, 1217, 1229, 1628
PpsI GAGTC 7 cut(s) 30, 241, 247, 1135, 1217, 1229, 1628
Ppu21I YACGTR 1 cut(s) 595
PshBI ATTAAT 2 cut(s) 525, 1167
Psp6I CCWGG 3 cut(s) 488, 786, 793
PspGI CCWGG 3 cut(s) 488, 786, 793
PspLI CGTACG 1 cut(s) 591
PspN4I GGNNCC 3 cut(s) 339, 792, 1243
PspPI GGNCC 2 cut(s) 338, 831
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 1 cut(s) 613
PvuI CGATCG 1 cut(s) 977
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 7 cut(s) 158, 249, 525, 1136, 1167, 1334, 1661
SatI GCNGC 3 cut(s) 259, 1106, 1563
Sau3AI GATC 9 cut(s) 99, 412, 541, 613, 732, 938, 974, 1377, 1452
Sau96I GGNCC 2 cut(s) 338, 831
SchI GAGTC 7 cut(s) 30, 242, 248, 1136, 1217, 1229, 1628
ScrFI CCNGG 3 cut(s) 490, 788, 795
SduI GDGCHC 1 cut(s) 1021
SfaNI GCATC 4 cut(s) 457, 791, 959, 1420
SfcI CTRYAG 2 cut(s) 826, 1203
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 3 cut(s) 621, 1424, 1616
SmoI CTYRAG 3 cut(s) 621, 1424, 1616
SnaBI TACGTA 1 cut(s) 595
SsiI CCGC 2 cut(s) 689, 1565
SspMI CTAG 2 cut(s) 572, 1487
StyD4I CCNGG 3 cut(s) 488, 786, 793
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 4 cut(s) 591, 895, 1466, 1523
TaiI ACGT 2 cut(s) 25, 597
TaqI TCGA 3 cut(s) 482, 973, 1295
TfiI GAWTC 2 cut(s) 126, 1199
Tru1I TTAA 7 cut(s) 158, 249, 525, 1136, 1167, 1334, 1661
Tru9I TTAA 7 cut(s) 158, 249, 525, 1136, 1167, 1334, 1661
TscAI CASTG 3 cut(s) 614, 734, 1387
TseFI GTSAC 2 cut(s) 713, 1466
TseI GCWGC 3 cut(s) 258, 1105, 1562
Tsp45I GTSAC 2 cut(s) 713, 1466
TspDTI ATGAA 5 cut(s) 324, 464, 555, 1352, 1405
TspRI CASTG 3 cut(s) 614, 734, 1387
VspI ATTAAT 2 cut(s) 525, 1167
XapI RAATTY 2 cut(s) 707, 1291
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 1130
XspI CTAG 2 cut(s) 572, 1487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.