Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007654

Physical Location & Seq

Genomic Coordinates Forward (+)

3539489 .. 3542402

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05490.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTATAAAAACAAAATTATTTACATTTTTTTCTTCTGATATTTGTCAGTACGAAGGTGCGGTTAAAGAGGATGGAAGAGGGCCTTCGATCTGGGACACCTTTTCACATACTTTTGATGGAACCGGGCAAATTAATCAGGCGGGTGTTGATTATTACAATCGTCTCATCGATGCATTACTAGCCAAAGGAATTGAACCATATGTGACCCTCTATCACTGGGACCTCCCTCAAGCCTTGGAAGACAGATACAACGGGTGGCTCAACCCTCAAATCATAAAGGACTTTGCAACGTACGCGGACACATGCTTTCAAAATTTTGGTGACAGGGTGAAACACTGGATCACATTCAACGAGCCACATACATTTTCTGTACATGGATATGCTTCGGGCCTCCAGGCACCTGGAAGGTGCTCTATCCTGCGTCCACTCTTATGCAGGTCCGGAAACTCTGCAACTGAGCCTTACATAGTTGCTCACAATGTCATCCTGTCTCATGGAACTGTGGCTGATATTTACAAGAGAAAGTATAAGTCAAAACAGCAGGGATCGGTTGGGGCATCATTTGATGTTATCTGGTACGAACCAGAAACAAACTCAACAGAAGACGTCATTGCAACTAGCGTAGCCCAAGAATTTCAGCTTGGCTGGTTTCTCGATCCATTTATTTTTGGGGATTATCCAAGCTCTATGAGAAGTAGGGTTGGGAGCCGGCTGCCAACCTTTTCCAAATCCGAGTCTACTCTAATTAAAGGGTCCTTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGGTAAAAACGATACCAGGGATTTAATCGGAGGTCTACTTAACGGCAGCCTTTCAGACTCTGGTGCCATTACCCTTCCATTCAAAAACGGGAAACCTATTGGAGATAGGGCGAATTCTATATGGTTATACATAGTCCCAGAGGGGATGAGAAAATTAATGAACTACATTAAGCAAAAGTACGGCAATCCTCCAGTGATTATCACCGAAAATGGCATGGATGACCCGAATAGCCTGTTCATTTCCCTCAAGGACGCTTTAAAGGATACAAAAAGGATTAAATACCACCATGACTATCTTGCAAATTTGCTAGCTTCGATCAAGCAAGACGGCTGCAATGTGAAGGGCTATTTTGCTTGGTCTCTACTGGATAATTGGGAATGGACGGCTGGATTCACTTCTCGATTTGGTCTCTACTTTGTGGATTATAAGGACAAGCTCAAGAGATACCCGAAGGACTCCGTTCAATGGTTCACGAATTTCTTGAATTCTACTCAAACAAGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008422 GO:0009507 GO:0009536 GO:0015925 GO:0015926 GO:0016787 GO:0016798 GO:0033907 GO:0042973 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0071704 GO:0080079 GO:0080083 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

435

Amino Acids

49.28

Weight (kDa)

7.63

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26560
fragaria_vesca	FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310
malus_domestica	MD13G1064200.v1.1 MD13G1064300.v1.1 MD16G1062800.v1.1
prunus_persica	Prupe.1G284600_v2.0.a1
pyrus_communis	pycom16g05490
rosa_chinensis	RchiOBHm_Chr4g0438611
rosa_laevigata	RLG00000006347
rosa_multiflora	Rmu_sc0002327.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379600
rosa_rugosa	Rorug04G0311700 Rorug04G0311800
rosa_samantha	Rh4AG362200 Rh4BG373600 Rh4CG387500
rosa_wichuraiana	Rw0G006690 Rw0G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1224
AatII	GACGTC	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	429
AccB1I	GGYRCC	2 cut(s)	400, 860
AccI	GTMKAC	2 cut(s)	740, 832
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	443
AciI	CCGC	3 cut(s)	62, 143, 299
AclWI	GGATC	3 cut(s)	350, 556, 653
AcsI	RAATTY	6 cut(s)	316, 635, 910, 1099, 1273, 1282
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	5 cut(s)	53, 296, 375, 581, 977
AfiI	CCNNNNNNNGG	1 cut(s)	1263
AgsI	TTSAA	6 cut(s)	197, 314, 352, 880, 1262, 1282
AjnI	CCWGG	3 cut(s)	396, 403, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AluBI	AGCT	4 cut(s)	643, 687, 1109, 1234
AluI	AGCT	4 cut(s)	643, 687, 1109, 1234
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	4 cut(s)	170, 498, 1161, 1211
AlwI	GGATC	3 cut(s)	350, 556, 653
AlwNI	CAGNNNCTG	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	443
AoxI	GGCC	2 cut(s)	83, 391
ApeKI	GCWGC	3 cut(s)	715, 843, 1128
ApoI	RAATTY	6 cut(s)	316, 635, 910, 1099, 1273, 1282
AseI	ATTAAT	3 cut(s)	135, 777, 953
AspS9I	GGNCC	5 cut(s)	83, 223, 391, 441, 756
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	335, 343, 991
AsuNHI	GCTAGC	1 cut(s)	1105
AvaII	GGWCC	3 cut(s)	223, 441, 756
BanI	GGYRCC	2 cut(s)	400, 860
BbsI	GAAGAC	2 cut(s)	249, 612
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	702, 855, 1115
BccI	CCATC	2 cut(s)	68, 113
BceAI	ACGGC	4 cut(s)	856, 994, 1141, 1197
BciT130I	CCWGG	3 cut(s)	398, 405, 814
BciVI	GTATCC	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	4 cut(s)	170, 498, 1161, 1211
BfaI	CTAG	3 cut(s)	182, 621, 1106
BfuAI	ACCTGC	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	1054
BisI	GCNGC	3 cut(s)	716, 844, 1129
BlsI	GCNGC	3 cut(s)	717, 845, 1130
Bme1390I	CCNGG	4 cut(s)	127, 398, 405, 814
Bme18I	GGWCC	3 cut(s)	223, 441, 756
BmgT120I	GGNCC	5 cut(s)	83, 223, 391, 441, 756
BmiI	GGNNCC	6 cut(s)	124, 224, 402, 710, 757, 862
BmrFI	CCNGG	4 cut(s)	127, 398, 405, 814
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	163, 569
BmtI	GCTAGC	1 cut(s)	1109
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	249, 612
BpmI	CTGGAG	2 cut(s)	380, 972
BpuEI	CTTGAG	3 cut(s)	216, 1028, 1220
BpuMI	CCSGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	2 cut(s)	1161, 1211
BsaJI	CCNNGG	3 cut(s)	237, 759, 813
BsaWI	WCCGGW	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	1263
Bse118I	RCCGGY	1 cut(s)	711
Bse1I	ACTGG	4 cut(s)	224, 344, 989, 1167
Bse3DI	GCAATG	2 cut(s)	612, 1138
BseAI	TCCGGA	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	398, 405, 814
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	237, 759, 813
BseGI	GGATG	4 cut(s)	79, 486, 948, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	1263
BseMI	GCAATG	2 cut(s)	612, 1138
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	4 cut(s)	224, 344, 989, 1167
BseXI	GCAGC	3 cut(s)	702, 855, 1115
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	85, 393
BshNI	GGYRCC	2 cut(s)	400, 860
BshVI	ATCGAT	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	3 cut(s)	126, 444, 712
BsiWI	CGTACG	1 cut(s)	294
BslFI	GGGAC	3 cut(s)	110, 236, 917
BslI	CCNNNNNNNGG	1 cut(s)	1263
BsmAI	GTCTC	4 cut(s)	170, 498, 1161, 1211
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	3 cut(s)	110, 236, 917
BsnI	GGCC	2 cut(s)	85, 393
Bso31I	GGTCTC	2 cut(s)	1161, 1211
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp13I	TCCGGA	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	5 cut(s)	90, 342, 548, 658, 1113
BspACI	CCGC	3 cut(s)	62, 143, 299
BspANI	GGCC	2 cut(s)	85, 393
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	6 cut(s)	124, 224, 402, 710, 757, 862
BspMI	ACCTGC	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	1109
BspPI	GGATC	3 cut(s)	350, 556, 653
BspT107I	GGYRCC	2 cut(s)	400, 860
BspTNI	GGTCTC	2 cut(s)	1161, 1211
BsrDI	GCAATG	2 cut(s)	612, 1138
BsrFI	RCCGGY	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	4 cut(s)	224, 344, 989, 1167
BssAI	RCCGGY	1 cut(s)	711
BssECI	CCNNGG	3 cut(s)	237, 759, 813
BssMI	GATC	5 cut(s)	90, 342, 548, 658, 1113
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	237, 759
Bst2UI	CCWGG	3 cut(s)	398, 405, 814
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	609
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	713, 1107
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	79, 486, 948, 1021
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	5 cut(s)	93, 345, 551, 661, 1116
BstMAI	GTCTC	4 cut(s)	170, 498, 1161, 1211
BstMBI	GATC	5 cut(s)	90, 342, 548, 658, 1113
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 296
BstNI	CCWGG	3 cut(s)	398, 405, 814
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	4 cut(s)	125, 396, 403, 812
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	702, 855, 1115
BstV2I	GAAGAC	2 cut(s)	249, 612
BstXI	CCANNNNNNTGG	1 cut(s)	404
Bsu15I	ATCGAT	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	1054
BsuRI	GGCC	2 cut(s)	85, 393
BsuTUI	ATCGAT	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	79, 486, 948, 1021
BtsIMutI	CAGTG	3 cut(s)	217, 337, 996
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	713, 1107
CaiI	CAGNNNCTG	1 cut(s)	857
Cfr10I	RCCGGY	1 cut(s)	711
Cfr13I	GGNCC	5 cut(s)	83, 223, 391, 441, 756
ClaI	ATCGAT	1 cut(s)	171
CseI	GACGC	2 cut(s)	413, 1058
Csp6I	GTAC	5 cut(s)	52, 295, 374, 580, 976
CviAII	CATG	5 cut(s)	306, 377, 497, 1012, 1085
CviQI	GTAC	5 cut(s)	52, 295, 374, 580, 976
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	5 cut(s)	92, 344, 550, 660, 1115
DpnII	GATC	5 cut(s)	90, 342, 548, 658, 1113
DraI	TTTAAA	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	237, 759
Eco31I	GGTCTC	2 cut(s)	1161, 1211
Eco47I	GGWCC	3 cut(s)	223, 441, 756
EcoO109I	RGGNCCY	3 cut(s)	83, 223, 756
EcoRI	GAATTC	2 cut(s)	910, 1282
EcoRII	CCWGG	3 cut(s)	396, 403, 812
EcoT14I	CCWWGG	2 cut(s)	237, 759
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	237, 759
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	5 cut(s)	309, 380, 500, 1015, 1088
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	3 cut(s)	110, 236, 917
FatI	CATG	5 cut(s)	305, 376, 496, 1011, 1084
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	740, 832
Fnu4HI	GCNGC	3 cut(s)	716, 844, 1129
FokI	GGATG	4 cut(s)	86, 473, 955, 1028
Fsp4HI	GCNGC	3 cut(s)	716, 844, 1129
FspBI	CTAG	3 cut(s)	182, 621, 1106
GluI	GCNGC	3 cut(s)	716, 844, 1129
GsuI	CTGGAG	2 cut(s)	380, 972
HaeIII	GGCC	2 cut(s)	85, 393
HapII	CCGG	3 cut(s)	126, 444, 712
HgaI	GACGC	2 cut(s)	413, 1058
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	5 cut(s)	309, 380, 500, 1015, 1088
HinfI	GANTC	4 cut(s)	737, 854, 1188, 1253
HpaII	CCGG	3 cut(s)	126, 444, 712
HphI	GGTGA	3 cut(s)	335, 343, 991
Hpy166II	GTNNAC	4 cut(s)	428, 741, 833, 1269
Hpy188I	TCNGA	4 cut(s)	40, 736, 827, 853
Hpy188III	TCNNGA	6 cut(s)	444, 656, 1197, 1237, 1270, 1279
Hpy8I	GTNNAC	4 cut(s)	428, 741, 833, 1269
HpyAV	CCTTC	7 cut(s)	50, 96, 402, 802, 881, 1132, 1243
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	2 cut(s)	293, 609
HpyCH4V	TGCA	7 cut(s)	176, 290, 438, 455, 617, 1097, 1131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 296
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	293, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	5 cut(s)	309, 380, 500, 1015, 1088
Kpn2I	TCCGGA	1 cut(s)	443
KroI	GCCGGC	1 cut(s)	711
KroNI	GCCGGC	1 cut(s)	713
Kzo9I	GATC	5 cut(s)	90, 342, 548, 658, 1113
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	3 cut(s)	702, 855, 1115
LweI	GCATC	2 cut(s)	163, 569
MaeI	CTAG	3 cut(s)	182, 621, 1106
MaeII	ACGT	2 cut(s)	293, 609
MaeIII	GTNAC	2 cut(s)	205, 323
MalI	GATC	5 cut(s)	92, 344, 550, 660, 1115
MboI	GATC	5 cut(s)	90, 342, 548, 658, 1113
MboII	GAAGA	4 cut(s)	27, 90, 254, 617
MhlI	GDGCHC	1 cut(s)	416
MlyI	GAGTC	3 cut(s)	746, 848, 1247
Mph1103I	ATGCAT	1 cut(s)	178
MroI	TCCGGA	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	711
MslI	CAYNNNNRTG	2 cut(s)	381, 433
MspI	CCGG	3 cut(s)	126, 444, 712
MspR9I	CCNGG	4 cut(s)	127, 398, 405, 814
MvaI	CCWGG	3 cut(s)	398, 405, 814
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	182, 296
NaeI	GCCGGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	5 cut(s)	90, 342, 548, 658, 1113
NgoMIV	GCCGGC	1 cut(s)	711
NheI	GCTAGC	1 cut(s)	1105
NlaIII	CATG	5 cut(s)	309, 380, 500, 1015, 1088
NlaIV	GGNNCC	6 cut(s)	124, 224, 402, 710, 757, 862
NmuCI	GTSAC	2 cut(s)	205, 323
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	1188
Pfl23II	CGTACG	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	717, 845, 1130
PleI	GAGTC	3 cut(s)	745, 848, 1247
PpsI	GAGTC	3 cut(s)	745, 848, 1247
PpuMI	RGGWCCY	2 cut(s)	223, 756
PshBI	ATTAAT	3 cut(s)	135, 777, 953
PsiI	TTATAA	1 cut(s)	1224
Psp5II	RGGWCCY	2 cut(s)	223, 756
Psp6I	CCWGG	3 cut(s)	396, 403, 812
PspGI	CCWGG	3 cut(s)	396, 403, 812
PspLI	CGTACG	1 cut(s)	294
PspN4I	GGNNCC	6 cut(s)	124, 224, 402, 710, 757, 862
PspPI	GGNCC	5 cut(s)	83, 223, 391, 441, 756
PspPPI	RGGWCCY	2 cut(s)	223, 756
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	5 cut(s)	53, 296, 375, 581, 977
RsaNI	GTAC	5 cut(s)	52, 295, 374, 580, 976
RseI	CAYNNNNRTG	2 cut(s)	381, 433
SatI	GCNGC	3 cut(s)	716, 844, 1129
Sau3AI	GATC	5 cut(s)	90, 342, 548, 658, 1113
Sau96I	GGNCC	5 cut(s)	83, 223, 391, 441, 756
SchI	GAGTC	3 cut(s)	746, 848, 1247
ScrFI	CCNGG	4 cut(s)	127, 398, 405, 814
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	2 cut(s)	163, 569
SinI	GGWCC	3 cut(s)	223, 441, 756
SmiMI	CAYNNNNRTG	2 cut(s)	381, 433
SmlI	CTYRAG	3 cut(s)	231, 1043, 1235
SmoI	CTYRAG	3 cut(s)	231, 1043, 1235
SsiI	CCGC	3 cut(s)	62, 143, 299
SspMI	CTAG	3 cut(s)	182, 621, 1106
StyD4I	CCNGG	4 cut(s)	125, 396, 403, 812
StyI	CCWWGG	2 cut(s)	237, 759
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	2 cut(s)	296, 612
TaqI	TCGA	5 cut(s)	89, 171, 657, 1112, 1198
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	1188
TscAI	CASTG	3 cut(s)	224, 344, 996
TseFI	GTSAC	2 cut(s)	205, 323
TseI	GCWGC	3 cut(s)	715, 843, 1128
Tsp45I	GTSAC	2 cut(s)	205, 323
TspDTI	ATGAA	2 cut(s)	971, 1024
TspGWI	ACGGA	1 cut(s)	1246
TspRI	CASTG	3 cut(s)	224, 344, 996
VpaK11BI	GGWCC	3 cut(s)	223, 441, 756
VspI	ATTAAT	3 cut(s)	135, 777, 953
XapI	RAATTY	6 cut(s)	316, 635, 910, 1099, 1273, 1282
XceI	RCATGY	1 cut(s)	309
XmiI	GTMKAC	2 cut(s)	740, 832
XspI	CTAG	3 cut(s)	182, 621, 1106
ZraI	GACGTC	1 cut(s)	610
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.