RLG00000006347

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6449855 .. 6453641
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006347

Sequence Viewer

Length: 1524 bp
ATGGGGTGGCAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTTATCGGAGTCTGAATCAGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGTATGAAGGCGCAGTAAAAGAGGATGGAAGGGGGCCTTCTGTATGGGACATTTTTTCACATACTTTTGGTAAAATAACTGATTTCAGTAATGCAGATGTTGCTGTGGATCAGTATCACCTTTATGATGCAAGTCTTCTCCAACCAGGAGATGTGCAACTTATGAAGGATATGGGAATGGATGCTTATAGGTTTTCGATATCCTGGTCTCGGATTTTCCCCAATGGAACGGGGCAAATCAATCAGGCAGGGGTTGATCACTACAATAAACTCATCAATTCATTGCTAGCGAAAGGAATTGAACCGTACGTAACCCTCTACCACTGGGATCTTCCTCAAGCCTTGGAAGACAGATACACTGGGTGGCTTGACGCTCAAATCATAAAGGACTTTGCAGTATATGCGGAGACATGCTTTCAGAAATTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACACACATTTGCTGTGCAAGGATATGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTATCCTACTGCACCTTTTCTGTAGGGCCGGAAACTCTGCGACTGAGCCTTACATAGTTGCTCACAATGTCATCCTTTCTCATGCAACTGTTGCCGACATTTACAGGAAAAAGTACAAGTCAAAACAAAAAGGATCAATTGGGGCATCATTTGATGTTATTTGGTATCGATCAGCAACAAACTCCACAGCAGACATTGAAGCAACTCAGAGAGCCCAAGATTTTCAGCTTGGATGGTTTCTTGACCCATTTATGTTTGGGGATTATCCATTCTCTATGAGAAGTAGAGTTGGAAGCCGGCTGCCAAAGTTTTCCAAATCTGAGTCCACTTTAATCAAGGGGTCATTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGCCAGTAACGATTCTATAGTCAGACTACTGAATGACTCCCTATCAGACTCTGGTGCCATTACCCTTCCTTTCAAAGATGGGAAACCTATTGGAGATAAGGCAAATTCGATATGGTTATACATAGTGCCTGAGGGGATGAGAAGCTTAATGAACTACATCAAGCAAAAGTATGGCAATCCTCCGGTGATGATCACTGAGAATGGCATGGATGACCCGAATAGCCCATTTATTTCCCTCAGGGATGCTCTAAAGGACAAGAAAAGGATCAATTACCACCGTGACTATTTGTCAAACTTGCTAGCTTCAATCAAAGAAGATGGGTGCAATGTGAACGGTTATTTTGCATGGTCTCTACTGGATAATTGGGAGTGGGCTGCGGGATACACTTCAAGATTTGGTCTCTATTTCATTGACTATAAGGACAAGCTCAAGAGATACCCTAAGGACTCTGTTCAATGGTTCAAGAACTTCTTAACTTCTACTTGA

Protein Analysis

508

Amino Acids

57.52

Weight (kDa)

6.83

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 30 - 505 1.1e-155 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 640, 1091
AciI CCGC 2 cut(s) 539, 1415
AclWI GGATC 5 cut(s) 252, 471, 590, 796, 1310
AcsI RAATTY 2 cut(s) 557, 1141
AdeI CACNNNGTG 1 cut(s) 498
AfaI GTAC 2 cut(s) 443, 770
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 8 cut(s) 437, 592, 854, 1111, 1344, 1428, 1493, 1501
AhdI GACNNNNNGTC 1 cut(s) 1324
AjnI CCWGG 4 cut(s) 280, 338, 636, 643
AluBI AGCT 5 cut(s) 93, 883, 1182, 1340, 1465
AluI AGCT 5 cut(s) 93, 883, 1182, 1340, 1465
Alw26I GTCTC 5 cut(s) 348, 536, 638, 1392, 1442
AlwI GGATC 5 cut(s) 252, 471, 590, 796, 1310
AlwNI CAGNNNCTG 1 cut(s) 1088
AoxI GGCC 2 cut(s) 170, 681
ApeKI GCWGC 3 cut(s) 90, 955, 1412
ApoI RAATTY 2 cut(s) 557, 1141
AseI ATTAAT 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 170, 681
AsuHPI GGTGA 5 cut(s) 55, 245, 575, 583, 1234
AsuNHI GCTAGC 2 cut(s) 421, 1336
AxyI CCTNAGG 3 cut(s) 1167, 1274, 1479
BanI GGYRCC 2 cut(s) 640, 1091
BanII GRGCYC 1 cut(s) 871
BbsI GAAGAC 2 cut(s) 263, 489
BbvI GCAGC 3 cut(s) 102, 942, 1399
BccI CCATC 4 cut(s) 155, 882, 1109, 1349
BciT130I CCWGG 4 cut(s) 282, 340, 638, 645
BciVI GTATCC 1 cut(s) 1412
BclI TGATCA 2 cut(s) 391, 1227
BcoDI GTCTC 5 cut(s) 348, 536, 638, 1392, 1442
BfaI CTAG 2 cut(s) 422, 1337
BfmI CTRYAG 2 cut(s) 676, 1053
BfuI GTATCC 1 cut(s) 1412
BisI GCNGC 3 cut(s) 91, 956, 1413
BlsI GCNGC 3 cut(s) 92, 957, 1414
Bme1390I CCNGG 4 cut(s) 282, 340, 638, 645
BmeRI GACNNNNNGTC 1 cut(s) 1324
BmgT120I GGNCC 2 cut(s) 170, 681
BmiI GGNNCC 3 cut(s) 171, 642, 1093
BmrFI CCNGG 4 cut(s) 282, 340, 638, 645
BmrI ACTGGG 2 cut(s) 469, 504
BmsI GCATC 5 cut(s) 253, 307, 641, 809, 1270
BmtI GCTAGC 2 cut(s) 425, 1340
BmuI ACTGGG 2 cut(s) 469, 504
BpiI GAAGAC 2 cut(s) 263, 489
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 456, 1451
Bsa29I ATCGAT 1 cut(s) 823
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 4 cut(s) 348, 638, 1392, 1442
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 1219
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 951
Bse1I ACTGG 6 cut(s) 136, 464, 499, 584, 1041, 1398
Bse21I CCTNAGG 3 cut(s) 1167, 1274, 1479
Bse3DI GCAATG 3 cut(s) 18, 416, 1369
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 4 cut(s) 282, 340, 638, 645
BseCI ATCGAT 1 cut(s) 823
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 7 cut(s) 166, 322, 726, 893, 1179, 1252, 1285
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 3 cut(s) 18, 416, 1369
BseMII CTCAG 6 cut(s) 690, 875, 966, 1158, 1224, 1288
BseNI ACTGG 6 cut(s) 136, 464, 499, 584, 1041, 1398
BseXI GCAGC 3 cut(s) 102, 942, 1399
BsgI GTGCAG 1 cut(s) 650
BshFI GGCC 2 cut(s) 172, 683
BshNI GGYRCC 2 cut(s) 640, 1091
BshVI ATCGAT 1 cut(s) 823
BsiSI CCGG 3 cut(s) 684, 952, 1220
BsiWI CGTACG 1 cut(s) 441
BslFI GGGAC 2 cut(s) 130, 197
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 5 cut(s) 348, 536, 638, 1392, 1442
BsmFI GGGAC 2 cut(s) 130, 197
BsnI GGCC 2 cut(s) 172, 683
Bso31I GGTCTC 4 cut(s) 348, 638, 1392, 1442
Bsp1286I GDGCHC 1 cut(s) 871
Bsp143I GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
BspACI CCGC 2 cut(s) 539, 1415
BspANI GGCC 2 cut(s) 172, 683
BspCNI CTCAG 6 cut(s) 691, 874, 967, 1159, 1225, 1287
BspDI ATCGAT 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 171, 642, 1093
BspOI GCTAGC 2 cut(s) 425, 1340
BspPI GGATC 5 cut(s) 252, 471, 590, 796, 1310
BspT107I GGYRCC 2 cut(s) 640, 1091
BspTNI GGTCTC 4 cut(s) 348, 638, 1392, 1442
BsrDI GCAATG 3 cut(s) 18, 416, 1369
BsrFI RCCGGY 1 cut(s) 951
BsrI ACTGG 6 cut(s) 136, 464, 499, 584, 1041, 1398
BssAI RCCGGY 1 cut(s) 951
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 4 cut(s) 282, 340, 638, 645
Bst4CI ACNGT 4 cut(s) 441, 745, 1316, 1373
BstAPI GCANNNNNTGC 3 cut(s) 236, 536, 746
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 3 cut(s) 423, 953, 1338
BstDEI CTNAG 7 cut(s) 699, 861, 975, 1167, 1233, 1274, 1479
BstF5I GGATG 7 cut(s) 166, 322, 726, 893, 1179, 1252, 1285
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 8 cut(s) 247, 394, 466, 585, 791, 827, 1230, 1305
BstMAI GTCTC 5 cut(s) 348, 536, 638, 1392, 1442
BstMBI GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
BstMWI GCNNNNNNNGC 4 cut(s) 128, 236, 536, 746
BstNI CCWGG 4 cut(s) 282, 340, 638, 645
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 4 cut(s) 280, 338, 636, 643
BstSFI CTRYAG 2 cut(s) 676, 1053
BstSNI TACGTA 1 cut(s) 445
BstV1I GCAGC 3 cut(s) 102, 942, 1399
BstV2I GAAGAC 2 cut(s) 263, 489
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 823
Bsu36I CCTNAGG 3 cut(s) 1167, 1274, 1479
BsuI GTATCC 1 cut(s) 1412
BsuRI GGCC 2 cut(s) 172, 683
BsuTUI ATCGAT 1 cut(s) 823
BtsCI GGATG 7 cut(s) 166, 322, 726, 893, 1179, 1252, 1285
BtsIMutI CAGTG 4 cut(s) 457, 492, 577, 1230
Cac8I GCNNGC 3 cut(s) 423, 953, 1338
CaiI CAGNNNCTG 1 cut(s) 1088
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 951
Cfr13I GGNCC 2 cut(s) 170, 681
ClaI ATCGAT 1 cut(s) 823
CseI GACGC 1 cut(s) 515
Csp6I GTAC 2 cut(s) 442, 769
CviAII CATG 4 cut(s) 546, 737, 1243, 1383
CviQI GTAC 2 cut(s) 442, 769
DdeI CTNAG 7 cut(s) 699, 861, 975, 1167, 1233, 1274, 1479
DpnI GATC 8 cut(s) 246, 393, 465, 584, 790, 826, 1229, 1304
DpnII GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
DraIII CACNNNGTG 1 cut(s) 498
DriI GACNNNNNGTC 1 cut(s) 1324
Eam1105I GACNNNNNGTC 1 cut(s) 1324
Eco105I TACGTA 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 871
Eco31I GGTCTC 4 cut(s) 348, 638, 1392, 1442
Eco32I GATATC 1 cut(s) 336
Eco81I CCTNAGG 3 cut(s) 1167, 1274, 1479
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 4 cut(s) 280, 338, 636, 643
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 4 cut(s) 549, 740, 1246, 1386
FalI AAGNNNNNCTT 3 cut(s) 157, 189, 1493
FaqI GGGAC 2 cut(s) 130, 197
FatI CATG 4 cut(s) 545, 736, 1242, 1382
FauI CCCGC 1 cut(s) 1408
FbaI TGATCA 2 cut(s) 391, 1227
Fnu4HI GCNGC 3 cut(s) 91, 956, 1413
FokI GGATG 7 cut(s) 173, 329, 713, 900, 1186, 1259, 1292
FriOI GRGCYC 1 cut(s) 871
Fsp4HI GCNGC 3 cut(s) 91, 956, 1413
FspBI CTAG 2 cut(s) 422, 1337
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 91, 956, 1413
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 2 cut(s) 172, 683
HapII CCGG 3 cut(s) 684, 952, 1220
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 549, 740, 1246, 1386
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 1180
HinfI GANTC 7 cut(s) 65, 71, 977, 1049, 1073, 1085, 1484
HpaII CCGG 3 cut(s) 684, 952, 1220
HphI GGTGA 5 cut(s) 55, 245, 575, 583, 1234
Hpy166II GTNNAC 2 cut(s) 981, 1369
Hpy188I TCNGA 9 cut(s) 64, 70, 76, 348, 555, 864, 976, 1061, 1084
Hpy188III TCNNGA 4 cut(s) 896, 1428, 1468, 1501
Hpy8I GTNNAC 2 cut(s) 981, 1369
HpyAV CCTTC 7 cut(s) 137, 142, 159, 183, 295, 1042, 1112
HpyCH4III ACNGT 4 cut(s) 441, 745, 1316, 1373
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 9 cut(s) 230, 266, 292, 530, 616, 667, 740, 1362, 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 236, 536, 746
HpyF3I CTNAG 7 cut(s) 699, 861, 975, 1167, 1233, 1274, 1479
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 4 cut(s) 549, 740, 1246, 1386
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 951
KroNI GCCGGC 1 cut(s) 953
Ksp22I TGATCA 2 cut(s) 391, 1227
Kzo9I GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
Lsp1109I GCAGC 3 cut(s) 102, 942, 1399
LweI GCATC 5 cut(s) 253, 307, 641, 809, 1270
MaeI CTAG 2 cut(s) 422, 1337
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 4 cut(s) 445, 563, 1043, 1316
MalI GATC 8 cut(s) 246, 393, 465, 584, 790, 826, 1229, 1304
MboI GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
MboII GAAGA 6 cut(s) 117, 263, 458, 494, 660, 1364
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 871
MluCI AATT 7 cut(s) 412, 432, 557, 792, 1141, 1306, 1399
MlyI GAGTC 5 cut(s) 74, 986, 1067, 1079, 1478
MmeI TCCRAC 2 cut(s) 301, 925
MnlI CCTC 8 cut(s) 8, 80, 151, 461, 480, 1162, 1227, 1283
MroNI GCCGGC 1 cut(s) 951
MseI TTAA 5 cut(s) 81, 986, 1017, 1184, 1511
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 3 cut(s) 684, 952, 1220
MspR9I CCNGG 4 cut(s) 282, 340, 638, 645
MunI CAATTG 1 cut(s) 792
MvaI CCWGG 4 cut(s) 282, 340, 638, 645
MwoI GCNNNNNNNGC 4 cut(s) 128, 236, 536, 746
NaeI GCCGGC 1 cut(s) 953
NdeII GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
NgoMIV GCCGGC 1 cut(s) 951
NheI GCTAGC 2 cut(s) 421, 1336
NlaIII CATG 4 cut(s) 549, 740, 1246, 1386
NlaIV GGNNCC 3 cut(s) 171, 642, 1093
NmuCI GTSAC 2 cut(s) 563, 1316
NspI RCATGY 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 953
PfeI GAWTC 2 cut(s) 71, 1049
Pfl23II CGTACG 1 cut(s) 441
PkrI GCNGC 3 cut(s) 92, 957, 1414
PleI GAGTC 5 cut(s) 73, 985, 1067, 1079, 1478
PpsI GAGTC 5 cut(s) 73, 985, 1067, 1079, 1478
Ppu21I YACGTR 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 1017
Psp6I CCWGG 4 cut(s) 280, 338, 636, 643
PspGI CCWGG 4 cut(s) 280, 338, 636, 643
PspLI CGTACG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 171, 642, 1093
PspPI GGNCC 2 cut(s) 170, 681
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 2 cut(s) 443, 770
RsaNI GTAC 2 cut(s) 442, 769
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 5 cut(s) 81, 986, 1017, 1184, 1511
SatI GCNGC 3 cut(s) 91, 956, 1413
Sau3AI GATC 8 cut(s) 244, 391, 463, 582, 788, 824, 1227, 1302
Sau96I GGNCC 2 cut(s) 170, 681
SchI GAGTC 5 cut(s) 74, 986, 1067, 1079, 1478
ScrFI CCNGG 4 cut(s) 282, 340, 638, 645
SduI GDGCHC 1 cut(s) 871
SfaNI GCATC 5 cut(s) 253, 307, 641, 809, 1270
SfcI CTRYAG 2 cut(s) 676, 1053
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 471, 1466
SmoI CTYRAG 2 cut(s) 471, 1466
SnaBI TACGTA 1 cut(s) 445
Sse9I AATT 7 cut(s) 412, 432, 557, 792, 1141, 1306, 1399
SsiI CCGC 2 cut(s) 539, 1415
SspMI CTAG 2 cut(s) 422, 1337
StyD4I CCNGG 4 cut(s) 280, 338, 636, 643
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 4 cut(s) 441, 745, 1316, 1373
TaiI ACGT 1 cut(s) 447
TaqI TCGA 3 cut(s) 332, 823, 1145
TasI AATT 7 cut(s) 412, 432, 557, 792, 1141, 1306, 1399
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 2 cut(s) 71, 1049
Tru1I TTAA 5 cut(s) 81, 986, 1017, 1184, 1511
Tru9I TTAA 5 cut(s) 81, 986, 1017, 1184, 1511
TscAI CASTG 4 cut(s) 464, 499, 584, 1237
TseFI GTSAC 2 cut(s) 563, 1316
TseI GCWGC 3 cut(s) 90, 955, 1412
Tsp45I GTSAC 2 cut(s) 563, 1316
TspDTI ATGAA 5 cut(s) 156, 314, 405, 1202, 1435
TspRI CASTG 4 cut(s) 464, 499, 584, 1237
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 2 cut(s) 557, 1141
XceI RCATGY 1 cut(s) 549
XspI CTAG 2 cut(s) 422, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.