Rw0G016640

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
Physical Location & Seq
Forward (+)
406953 .. 411363
4411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016640.1

Sequence Viewer

Length: 1506 bp
ATGGGGGGGCAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTTATCGGAGTCTGAGTCGGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGTATGAAGGCGCAGTTAAAGAGGATGGGAGGGGGCCTTCTGTATGGGACATTTTTTCACACACTTTTGGTAAAATAACTGATTTCAGTAATGCAGATGTTGCTGTGGATCAGTATCACCTTTATGATGGAGATGTGCAACTTATGAAGGATATGGGAATGGATGCTTATAGGTTTTCGATATCCTGGTCTCGGATTTTCCCCAATGGAACGGGGCAAATCAATCAGGCAGGGGTTGATCACTACAATAAACTCATCAATTCATTGCTAGCGAAAGGAATTGAACCGTACGTAACCCTCTACCACTGGGATCTTCCTCAAGCCTTGGAAGACAGATACACTGGGTGGCTTGACGCTCAAATCATAAAGGACTTTGCAGTATATGCGGAGACATGCTTTCAGAAATTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACACACATTTGCTGTGCAAGGATATGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTATCCTACTGCACCTTTTCTGTAGGGCCGGAAACTCTGCGACTGAGCCTTACATAGTTGCTCACAATGTCATCCTTTCTCATGCAACTGTTGCCGACATTTACAGGAAAAAGTATAAGTCAAAACAAAAAGGATCAATTGGGGCATCATTTGATGTTATTTGGTATCGATCGGCAACAAACTCCACAGCAGACATTGAAGCAACTCAGAGAGCCCAAGATTTTCAGCTTGGCTGGTTTCTTGACCCATTTATGTTTGGGAATTATCCATTCTCTATGAGAAGTAGAGTTGGAAGCCGGCTGCCAAAGTTTTCCAAATCTGAGTCTACTTTAATCAAGGGGTCATTGGATTTTGTGGGCATTAATCACTACACTACTTTCTATGCCAGTAACGATTCTATAGTCAGACTACTGAATGACTCCCTATCAGACTCTGGTGCCATTACCCTTCCTTTCAAAGATGGGAAACCTATTGGAGATAAGGCAAATTCGATATGGTTATACATAGTGCCTGAGGGGATGAGAAGCTTAATGAACTACATCAAGCAAAAGTATGGCAATCCTCCTGTGATGATCACTGAGAATGGCATGGATGACCCGAATAGCCCATTCATTTCCCTCAAGGATGCTCTAAAGGACAAGAAAAGGATCAATTACCACCGTGACTATTTGTCAAACTTGCTAGCTTCAATCAAAGAAGATGGGTGCAATGTAAACGGTTATTTTGCATGGTCTCTACTGGATAATTGGGAGTGGGCTGCGGGATACACTTCAAGATTTGGTCTCTATTTCATTGACTATAAGGACAAGCTCAAGAGATACCCTAAGGACTCTGTTCAATGGTTCAAGAACTTCTTAACTTCTACTTGA

Protein Analysis

501

Amino Acids

56.75

Weight (kDa)

7.16

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 30 - 499 3e-158 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 1073
AccI GTMKAC 1 cut(s) 962
AciI CCGC 2 cut(s) 521, 1397
AclWI GGATC 5 cut(s) 252, 453, 572, 778, 1292
AcsI RAATTY 2 cut(s) 539, 1123
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 8 cut(s) 419, 574, 836, 1093, 1326, 1410, 1475, 1483
AhdI GACNNNNNGTC 1 cut(s) 1306
AjnI CCWGG 3 cut(s) 320, 618, 625
AluBI AGCT 5 cut(s) 93, 865, 1164, 1322, 1447
AluI AGCT 5 cut(s) 93, 865, 1164, 1322, 1447
Alw26I GTCTC 5 cut(s) 330, 518, 620, 1374, 1424
AlwI GGATC 5 cut(s) 252, 453, 572, 778, 1292
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 170, 663
ApeKI GCWGC 3 cut(s) 90, 937, 1394
ApoI RAATTY 2 cut(s) 539, 1123
AseI ATTAAT 1 cut(s) 999
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 170, 663
AsuHPI GGTGA 4 cut(s) 55, 245, 557, 565
AsuNHI GCTAGC 2 cut(s) 403, 1318
AxyI CCTNAGG 2 cut(s) 1149, 1461
BanI GGYRCC 2 cut(s) 622, 1073
BanII GRGCYC 1 cut(s) 853
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 102, 924, 1381
BccI CCATC 4 cut(s) 155, 257, 1091, 1331
BciT130I CCWGG 3 cut(s) 322, 620, 627
BciVI GTATCC 1 cut(s) 1394
BclI TGATCA 2 cut(s) 373, 1209
BcoDI GTCTC 5 cut(s) 330, 518, 620, 1374, 1424
BfaI CTAG 2 cut(s) 404, 1319
BfmI CTRYAG 2 cut(s) 658, 1035
BfuI GTATCC 1 cut(s) 1394
BisI GCNGC 3 cut(s) 91, 938, 1395
BlsI GCNGC 3 cut(s) 92, 939, 1396
Bme1390I CCNGG 3 cut(s) 322, 620, 627
BmeRI GACNNNNNGTC 1 cut(s) 1306
BmgT120I GGNCC 2 cut(s) 170, 663
BmiI GGNNCC 3 cut(s) 171, 624, 1075
BmrFI CCNGG 3 cut(s) 322, 620, 627
BmrI ACTGGG 2 cut(s) 451, 486
BmsI GCATC 4 cut(s) 289, 623, 791, 1252
BmtI GCTAGC 2 cut(s) 407, 1322
BmuI ACTGGG 2 cut(s) 451, 486
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 3 cut(s) 438, 1241, 1433
Bsa29I ATCGAT 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 4 cut(s) 330, 620, 1374, 1424
BsaJI CCNNGG 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 933
Bse1I ACTGG 6 cut(s) 136, 446, 481, 566, 1023, 1380
Bse21I CCTNAGG 2 cut(s) 1149, 1461
Bse3DI GCAATG 3 cut(s) 18, 398, 1351
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 3 cut(s) 322, 620, 627
BseCI ATCGAT 1 cut(s) 805
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 6 cut(s) 166, 304, 708, 1161, 1234, 1267
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 3 cut(s) 18, 398, 1351
BseMII CTCAG 6 cut(s) 60, 672, 857, 948, 1140, 1206
BseNI ACTGG 6 cut(s) 136, 446, 481, 566, 1023, 1380
BseXI GCAGC 3 cut(s) 102, 924, 1381
BsgI GTGCAG 1 cut(s) 632
Bsh1285I CGRYCG 1 cut(s) 809
BshFI GGCC 2 cut(s) 172, 665
BshNI GGYRCC 2 cut(s) 622, 1073
BshVI ATCGAT 1 cut(s) 805
BsiEI CGRYCG 1 cut(s) 809
BsiSI CCGG 2 cut(s) 666, 934
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 130, 197
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 5 cut(s) 330, 518, 620, 1374, 1424
BsmFI GGGAC 2 cut(s) 130, 197
BsnI GGCC 2 cut(s) 172, 665
Bso31I GGTCTC 4 cut(s) 330, 620, 1374, 1424
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
BspACI CCGC 2 cut(s) 521, 1397
BspANI GGCC 2 cut(s) 172, 665
BspCNI CTCAG 6 cut(s) 61, 673, 856, 949, 1141, 1207
BspDI ATCGAT 1 cut(s) 805
BspLI GGNNCC 3 cut(s) 171, 624, 1075
BspOI GCTAGC 2 cut(s) 407, 1322
BspPI GGATC 5 cut(s) 252, 453, 572, 778, 1292
BspT107I GGYRCC 2 cut(s) 622, 1073
BspTNI GGTCTC 4 cut(s) 330, 620, 1374, 1424
BsrDI GCAATG 3 cut(s) 18, 398, 1351
BsrFI RCCGGY 1 cut(s) 933
BsrI ACTGG 6 cut(s) 136, 446, 481, 566, 1023, 1380
BssAI RCCGGY 1 cut(s) 933
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 322, 620, 627
Bst4CI ACNGT 4 cut(s) 423, 727, 1298, 1355
BstAPI GCANNNNNTGC 3 cut(s) 236, 518, 728
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 405, 935, 1320
BstDEI CTNAG 7 cut(s) 69, 681, 843, 957, 1149, 1215, 1461
BstF5I GGATG 6 cut(s) 166, 304, 708, 1161, 1234, 1267
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 8 cut(s) 247, 376, 448, 567, 773, 809, 1212, 1287
BstMAI GTCTC 5 cut(s) 330, 518, 620, 1374, 1424
BstMBI GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
BstMCI CGRYCG 1 cut(s) 809
BstMWI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
BstNI CCWGG 3 cut(s) 322, 620, 627
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 320, 618, 625
BstSFI CTRYAG 2 cut(s) 658, 1035
BstSNI TACGTA 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 102, 924, 1381
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 805
Bsu36I CCTNAGG 2 cut(s) 1149, 1461
BsuI GTATCC 1 cut(s) 1394
BsuRI GGCC 2 cut(s) 172, 665
BsuTUI ATCGAT 1 cut(s) 805
BtsCI GGATG 6 cut(s) 166, 304, 708, 1161, 1234, 1267
BtsIMutI CAGTG 4 cut(s) 439, 474, 559, 1212
Cac8I GCNNGC 3 cut(s) 405, 935, 1320
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 933
Cfr13I GGNCC 2 cut(s) 170, 663
ClaI ATCGAT 1 cut(s) 805
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 424
CviAII CATG 4 cut(s) 528, 719, 1225, 1365
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 7 cut(s) 69, 681, 843, 957, 1149, 1215, 1461
DpnI GATC 8 cut(s) 246, 375, 447, 566, 772, 808, 1211, 1286
DpnII GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
DraIII CACNNNGTG 1 cut(s) 480
DriI GACNNNNNGTC 1 cut(s) 1306
Eam1105I GACNNNNNGTC 1 cut(s) 1306
Eco105I TACGTA 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 853
Eco31I GGTCTC 4 cut(s) 330, 620, 1374, 1424
Eco32I GATATC 1 cut(s) 318
Eco81I CCTNAGG 2 cut(s) 1149, 1461
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 320, 618, 625
EcoRV GATATC 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 4 cut(s) 531, 722, 1228, 1368
FalI AAGNNNNNCTT 1 cut(s) 1475
FaqI GGGAC 2 cut(s) 130, 197
FatI CATG 4 cut(s) 527, 718, 1224, 1364
FauI CCCGC 1 cut(s) 1390
FbaI TGATCA 2 cut(s) 373, 1209
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 3 cut(s) 91, 938, 1395
FokI GGATG 6 cut(s) 173, 311, 695, 1168, 1241, 1274
FriOI GRGCYC 1 cut(s) 853
Fsp4HI GCNGC 3 cut(s) 91, 938, 1395
FspBI CTAG 2 cut(s) 404, 1319
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 91, 938, 1395
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 172, 665
HapII CCGG 2 cut(s) 666, 934
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 531, 722, 1228, 1368
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 1162
HinfI GANTC 7 cut(s) 65, 71, 959, 1031, 1055, 1067, 1466
HpaII CCGG 2 cut(s) 666, 934
HphI GGTGA 4 cut(s) 55, 245, 557, 565
Hpy166II GTNNAC 2 cut(s) 963, 1351
Hpy188I TCNGA 9 cut(s) 64, 70, 76, 330, 537, 846, 958, 1043, 1066
Hpy188III TCNNGA 4 cut(s) 878, 1410, 1450, 1483
Hpy8I GTNNAC 2 cut(s) 963, 1351
HpyAV CCTTC 5 cut(s) 137, 142, 183, 277, 1094
HpyCH4III ACNGT 4 cut(s) 423, 727, 1298, 1355
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 8 cut(s) 230, 274, 512, 598, 649, 722, 1344, 1364
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
HpyF3I CTNAG 7 cut(s) 69, 681, 843, 957, 1149, 1215, 1461
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 4 cut(s) 531, 722, 1228, 1368
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 933
KroNI GCCGGC 1 cut(s) 935
Ksp22I TGATCA 2 cut(s) 373, 1209
Kzo9I GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
Lsp1109I GCAGC 3 cut(s) 102, 924, 1381
LweI GCATC 4 cut(s) 289, 623, 791, 1252
MaeI CTAG 2 cut(s) 404, 1319
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 427, 545, 1025, 1298
MalI GATC 8 cut(s) 246, 375, 447, 566, 772, 808, 1211, 1286
MboI GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
MboII GAAGA 5 cut(s) 117, 440, 476, 642, 1346
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 853
MluCI AATT 8 cut(s) 394, 414, 539, 774, 898, 1123, 1288, 1381
MlyI GAGTC 6 cut(s) 74, 80, 968, 1049, 1061, 1460
MmeI TCCRAC 2 cut(s) 54, 907
MnlI CCTC 9 cut(s) 8, 80, 151, 159, 443, 462, 1144, 1209, 1265
MroNI GCCGGC 1 cut(s) 933
MseI TTAA 6 cut(s) 81, 153, 968, 999, 1166, 1493
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 2 cut(s) 666, 934
MspR9I CCNGG 3 cut(s) 322, 620, 627
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 3 cut(s) 322, 620, 627
MwoI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
NaeI GCCGGC 1 cut(s) 935
NdeII GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
NgoMIV GCCGGC 1 cut(s) 933
NheI GCTAGC 2 cut(s) 403, 1318
NlaIII CATG 4 cut(s) 531, 722, 1228, 1368
NlaIV GGNNCC 3 cut(s) 171, 624, 1075
NmuCI GTSAC 2 cut(s) 545, 1298
NspI RCATGY 1 cut(s) 531
PdiI GCCGGC 1 cut(s) 935
PfeI GAWTC 1 cut(s) 1031
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 3 cut(s) 92, 939, 1396
Ple19I CGATCG 1 cut(s) 809
PleI GAGTC 6 cut(s) 73, 79, 967, 1049, 1061, 1460
PpsI GAGTC 6 cut(s) 73, 79, 967, 1049, 1061, 1460
Ppu21I YACGTR 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 999
Psp6I CCWGG 3 cut(s) 320, 618, 625
PspGI CCWGG 3 cut(s) 320, 618, 625
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 3 cut(s) 171, 624, 1075
PspPI GGNCC 2 cut(s) 170, 663
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 445
PvuI CGATCG 1 cut(s) 809
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 6 cut(s) 81, 153, 968, 999, 1166, 1493
SatI GCNGC 3 cut(s) 91, 938, 1395
Sau3AI GATC 8 cut(s) 244, 373, 445, 564, 770, 806, 1209, 1284
Sau96I GGNCC 2 cut(s) 170, 663
SchI GAGTC 6 cut(s) 74, 80, 968, 1049, 1061, 1460
ScrFI CCNGG 3 cut(s) 322, 620, 627
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 4 cut(s) 289, 623, 791, 1252
SfcI CTRYAG 2 cut(s) 658, 1035
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 453, 1256, 1448
SmoI CTYRAG 3 cut(s) 453, 1256, 1448
SnaBI TACGTA 1 cut(s) 427
Sse9I AATT 8 cut(s) 394, 414, 539, 774, 898, 1123, 1288, 1381
SsiI CCGC 2 cut(s) 521, 1397
SspMI CTAG 2 cut(s) 404, 1319
StyD4I CCNGG 3 cut(s) 320, 618, 625
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 4 cut(s) 423, 727, 1298, 1355
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 314, 805, 1127
TasI AATT 8 cut(s) 394, 414, 539, 774, 898, 1123, 1288, 1381
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 6 cut(s) 81, 153, 968, 999, 1166, 1493
Tru9I TTAA 6 cut(s) 81, 153, 968, 999, 1166, 1493
TscAI CASTG 4 cut(s) 446, 481, 566, 1219
TseFI GTSAC 2 cut(s) 545, 1298
TseI GCWGC 3 cut(s) 90, 937, 1394
Tsp45I GTSAC 2 cut(s) 545, 1298
TspDTI ATGAA 6 cut(s) 156, 296, 387, 1184, 1237, 1417
TspRI CASTG 4 cut(s) 446, 481, 566, 1219
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 539, 1123
XceI RCATGY 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 962
XspI CTAG 2 cut(s) 404, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.