AT1G26560

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007654
Physical Location & Seq
Forward (+)
9178212 .. 9181967
3756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26560.1

Sequence Viewer

Length: 1533 bp
ATGGCTCATAGGAGATTAATCATGACGATGACAAAGATGATGATGATGGTGACCATGATGATGATGATGGATAAAACATGCATATGTGCGGACATTTCCAGAGGCAGTTTTCCAAAGGGCTTTGTCTTTGGAACTGCTTCTTCGGCTTTTCAGCATGAAGGAGCGGTGAAGGCAGAAGGCAGAGGTCCTACGATATGGGACACATTTTCCCACACTTTTGGTAAAATCACCGATTTTAGCAATGCTGATGTCGCTGTTGATCAGTATCATCGTTACGAGGAAGATGTACAACTTATGAAGAATATGGGAATGGACGCTTACAGATTTTCCATTTCTTGGACCCGCATCTTTCCAAATGGTGTTGGACATATAAATGAAGCCGGAATCGATCACTACAACAAACTCATAAATGCTTTACTTGCTAAAGGGATCGAGCCGTACGTGACACTGTACCACTGGGATCTTCCACAAGCACTTCATGATCGATACCTCGGTTGGCTAAACCCACAAATCATAAATGATTTTGCAGCGTATGCGGAGGTTTGTTTCCAGAGATTTGGAGATAGAGTGAAGCACTGGATCACGTTCAACGAGCCACACACGTTCGCGATACAAGGCTATGATGTTGGCCTACAAGCTCCAGGCCGTTGCACTATTCTTTTTAAGCTCACTTGTCGCGAAGGAAACTCATCGACCGAGCCTTACATTGTTGGTCACAATGTTATTTTAACTCACGCCACAGTATCCGATATCTATAGGAAAAAGTATAAGGCAAAGCAAGGAGGTTCGTTAGGGATTGCGTTTGATGTAATGTGGTTTGAACCAGAGTCGAACAAGACAGAGGACATTGAAGCTGCACAAAGAGCTCAAGACTTTCAACTTGGCTGGTTTTTGGATCCGTTGATGTTTGGGGATTACCCAAGCTCGATGAGAAGCAGAGTCGGAAGCAGATTACCGGTGTTTACAGGATCTCAATCTTCTCTGGTGAAGGGTTCTTTAGATTTTGTAGGGATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATTGGCACTCTTCTACACGACGCCGTTTCTGATTCTGGAACCGTCACTCTACCGTTTAAGGGTTTAAGCACGATTGGAGATAGGGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAAATGGAATGGACGACCCAAACAGCATTCTGATCTCAAGAAAAGACGCTCTCAAAGATGCAAAGAGGATCAAATACCATCATGATTACCTTTCTAGCTTACAAGCTTCGATAAAAGAGGATGGATGTAATGTCAAAGGGTACTTCGTATGGTCGCTATTGGACAATTGGGAATGGGCAGCAGGTTATAGTTCAAGATTTGGTCTCTACTTCGTTGATTACAGAGACAACCTCAAGAGATATCCTAAAGACTCTGTTCATTGGTTCACTTCTTTCTTAAACTCCACTTCTTGA

Protein Analysis

510

Amino Acids

58.12

Weight (kDa)

8.07

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 35 - 507 8.1e-162 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1412
AccB7I CCANNNNNTGG 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 2 cut(s) 608, 678
AciI CCGC 4 cut(s) 89, 164, 343, 536
AclWI GGATC 7 cut(s) 437, 468, 587, 890, 903, 976, 1316
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 6 cut(s) 288, 440, 452, 1031, 1163, 1382
AfiI CCNNNNNNNGG 2 cut(s) 336, 1118
AflIII ACRYGT 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 955
AgsI TTSAA 5 cut(s) 589, 821, 851, 878, 1434
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 8 cut(s) 638, 667, 854, 866, 924, 1188, 1338, 1346
AluI AGCT 8 cut(s) 638, 667, 854, 866, 924, 1188, 1338, 1346
Alw21I GWGCWC 1 cut(s) 868
Alw26I GTCTC 2 cut(s) 1448, 1458
AlwI GGATC 7 cut(s) 437, 468, 587, 890, 903, 976, 1316
AoxI GGCC 2 cut(s) 628, 643
ApeKI GCWGC 3 cut(s) 527, 854, 1418
AseI ATTAAT 2 cut(s) 17, 1014
AsiGI ACCGGT 1 cut(s) 955
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 185, 339
AsuHPI GGTGA 4 cut(s) 61, 178, 220, 997
AvaII GGWCC 2 cut(s) 185, 339
BaeI ACNNNNGTAYC 2 cut(s) 478, 511
BamHI GGATCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 868
BbsI GAAGAC 1 cut(s) 1222
Bbv12I GWGCWC 1 cut(s) 868
BbvI GCAGC 3 cut(s) 539, 841, 1430
BccI CCATC 4 cut(s) 40, 61, 1326, 1355
BceAI ACGGC 3 cut(s) 421, 630, 1067
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 754
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 1448, 1458
BfaI CTAG 2 cut(s) 1173, 1335
BfmI CTRYAG 1 cut(s) 754
BfuAI ACCTGC 1 cut(s) 1412
BfuI GTATCC 1 cut(s) 754
BisI GCNGC 3 cut(s) 528, 855, 1419
BlsI GCNGC 3 cut(s) 529, 856, 1420
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 2 cut(s) 185, 339
BmgT120I GGNCC 2 cut(s) 185, 339
BmiI GGNNCC 3 cut(s) 341, 897, 1099
BmrFI CCNGG 1 cut(s) 642
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 354, 1288
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 1222
BplI GAGNNNNNCTC 2 cut(s) 1455, 1487
BpmI CTGGAG 2 cut(s) 624, 1209
BpuEI CTTGAG 3 cut(s) 852, 1261, 1457
Bsa29I ATCGAT 2 cut(s) 387, 484
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 2 cut(s) 264, 973
BsaHI GRCGYC 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 1448
BsaJI CCNNGG 1 cut(s) 490
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 1118
Bse118I RCCGGY 1 cut(s) 955
Bse1I ACTGG 3 cut(s) 461, 581, 1226
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 2 cut(s) 264, 973
BseBI CCWGG 1 cut(s) 642
BseCI ATCGAT 2 cut(s) 387, 484
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 3 cut(s) 1185, 1366, 1370
BseJI GATNNNNATC 2 cut(s) 264, 973
BseLI CCNNNNNNNGG 2 cut(s) 336, 1118
BseMI GCAATG 1 cut(s) 247
BseNI ACTGG 3 cut(s) 461, 581, 1226
BseXI GCAGC 3 cut(s) 539, 841, 1430
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 2 cut(s) 608, 678
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 2 cut(s) 630, 645
BshTI ACCGGT 1 cut(s) 955
BshVI ATCGAT 2 cut(s) 387, 484
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 868
BsiSI CCGG 2 cut(s) 381, 956
BsiWI CGTACG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 336, 1118
BsmAI GTCTC 2 cut(s) 1448, 1458
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 1266
BsnI GGCC 2 cut(s) 630, 645
Bso31I GGTCTC 1 cut(s) 1448
Bsp1286I GDGCHC 1 cut(s) 868
Bsp1407I TGTACA 2 cut(s) 286, 1161
Bsp68I TCGCGA 2 cut(s) 608, 678
BspACI CCGC 4 cut(s) 89, 164, 343, 536
BspANI GGCC 2 cut(s) 630, 645
BspDI ATCGAT 2 cut(s) 387, 484
BspFNI CGCG 2 cut(s) 608, 678
BspHI TCATGA 3 cut(s) 21, 478, 1321
BspLI GGNNCC 3 cut(s) 341, 897, 1099
BspMI ACCTGC 1 cut(s) 1412
BspPI GGATC 7 cut(s) 437, 468, 587, 890, 903, 976, 1316
BspTNI GGTCTC 1 cut(s) 1448
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 955
BsrGI TGTACA 2 cut(s) 286, 1161
BsrI ACTGG 3 cut(s) 461, 581, 1226
BssAI RCCGGY 1 cut(s) 955
BssECI CCNNGG 1 cut(s) 490
BssNI GRCGYC 1 cut(s) 1080
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 4 cut(s) 450, 742, 1102, 1113
Bst6I CTCTTC 1 cut(s) 1074
BstACI GRCGYC 1 cut(s) 1080
BstAPI GCANNNNNTGC 1 cut(s) 533
BstAUI TGTACA 2 cut(s) 286, 1161
BstBAI YACGTR 1 cut(s) 442
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 3 cut(s) 1185, 1366, 1370
BstFNI CGCG 2 cut(s) 608, 678
BstMAI GTCTC 2 cut(s) 1448, 1458
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 6 cut(s) 143, 170, 251, 419, 533, 863
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 2 cut(s) 608, 678
BstV1I GCAGC 3 cut(s) 539, 841, 1430
BstV2I GAAGAC 1 cut(s) 1222
BstX2I RGATCY 3 cut(s) 460, 895, 968
BstXI CCANNNNNNTGG 2 cut(s) 218, 557
BstYI RGATCY 3 cut(s) 460, 895, 968
Bsu15I ATCGAT 2 cut(s) 387, 484
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 2 cut(s) 630, 645
BsuTUI ATCGAT 2 cut(s) 387, 484
BtsCI GGATG 3 cut(s) 1185, 1366, 1370
BtsIMutI CAGTG 4 cut(s) 446, 454, 574, 1236
BtuMI TCGCGA 2 cut(s) 608, 678
BveI ACCTGC 1 cut(s) 1412
CciI TCATGA 3 cut(s) 21, 478, 1321
Cfr10I RCCGGY 1 cut(s) 955
Cfr13I GGNCC 2 cut(s) 185, 339
ClaI ATCGAT 2 cut(s) 387, 484
CseI GACGC 3 cut(s) 323, 1088, 1295
Csp6I GTAC 6 cut(s) 287, 439, 451, 1030, 1162, 1381
CspAI ACCGGT 1 cut(s) 955
CviAII CATG 6 cut(s) 22, 55, 78, 155, 479, 1322
CviQI GTAC 6 cut(s) 287, 439, 451, 1030, 1162, 1381
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 866
Eco24I GRGCYC 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 1448
Eco32I GATATC 2 cut(s) 751, 1481
Eco47I GGWCC 2 cut(s) 185, 339
Eco53kI GAGCTC 1 cut(s) 866
Eco91I GGTNACC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 2 cut(s) 751, 1481
EcoT22I ATGCAT 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 868
FaeI CATG 6 cut(s) 25, 58, 81, 158, 482, 1325
FaqI GGGAC 1 cut(s) 212
FatI CATG 6 cut(s) 21, 54, 77, 154, 478, 1321
FauI CCCGC 1 cut(s) 350
FauNDI CATATG 1 cut(s) 83
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 528, 855, 1419
FokI GGATG 3 cut(s) 1192, 1373, 1377
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 3 cut(s) 528, 855, 1419
FspBI CTAG 2 cut(s) 1173, 1335
GluI GCNGC 3 cut(s) 528, 855, 1419
GsuI CTGGAG 2 cut(s) 624, 1209
HaeIII GGCC 2 cut(s) 630, 645
HapII CCGG 2 cut(s) 381, 956
HgaI GACGC 3 cut(s) 323, 1088, 1295
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 6 cut(s) 25, 58, 81, 158, 482, 1325
HindIII AAGCTT 2 cut(s) 1186, 1344
HinfI GANTC 5 cut(s) 384, 827, 939, 1091, 1490
HpaII CCGG 2 cut(s) 381, 956
HphI GGTGA 4 cut(s) 61, 178, 220, 997
Hpy166II GTNNAC 2 cut(s) 963, 1506
Hpy188I TCNGA 4 cut(s) 748, 944, 1090, 1272
Hpy8I GTNNAC 2 cut(s) 963, 1506
Hpy99I CGWCG 1 cut(s) 1082
HpyAV CCTTC 5 cut(s) 152, 163, 170, 674, 982
HpyCH4III ACNGT 4 cut(s) 450, 742, 1102, 1113
HpyCH4IV ACGT 4 cut(s) 441, 584, 602, 1028
HpyCH4V TGCA 5 cut(s) 81, 527, 651, 857, 1301
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 170, 251, 419, 533, 863
HpySE526I ACGT 4 cut(s) 441, 584, 602, 1028
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 6 cut(s) 25, 58, 81, 158, 482, 1325
Ksp22I TGATCA 1 cut(s) 259
LmnI GCTCC 2 cut(s) 161, 643
Lsp1109I GCAGC 3 cut(s) 539, 841, 1430
LweI GCATC 2 cut(s) 354, 1288
MaeI CTAG 2 cut(s) 1173, 1335
MaeII ACGT 4 cut(s) 441, 584, 602, 1028
MaeIII GTNAC 5 cut(s) 49, 272, 442, 713, 1102
MbiI CCGCTC 1 cut(s) 164
MboII GAAGA 7 cut(s) 132, 293, 310, 455, 969, 1061, 1222
MfeI CAATTG 1 cut(s) 1405
MflI RGATCY 3 cut(s) 460, 895, 968
MhlI GDGCHC 1 cut(s) 868
MluCI AATT 2 cut(s) 1195, 1405
MlyI GAGTC 3 cut(s) 836, 948, 1484
MmeI TCCRAC 2 cut(s) 343, 922
Mph1103I ATGCAT 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 8 cut(s) 17, 663, 728, 1014, 1116, 1124, 1203, 1517
MslI CAYNNNNRTG 5 cut(s) 26, 59, 82, 372, 1212
MspI CCGG 2 cut(s) 381, 956
MspR9I CCNGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 1405
Mva1269I GAATGC 1 cut(s) 1266
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 2 cut(s) 608, 678
MwoI GCNNNNNNNGC 6 cut(s) 143, 170, 251, 419, 533, 863
NdeI CATATG 1 cut(s) 83
NlaIII CATG 6 cut(s) 25, 58, 81, 158, 482, 1325
NlaIV GGNNCC 3 cut(s) 341, 897, 1099
NmuCI GTSAC 4 cut(s) 49, 442, 713, 1102
NruI TCGCGA 2 cut(s) 608, 678
NsiI ATGCAT 1 cut(s) 83
NspI RCATGY 1 cut(s) 81
PagI TCATGA 3 cut(s) 21, 478, 1321
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 1266
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 384, 1091
Pfl23II CGTACG 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 336
PinAI ACCGGT 1 cut(s) 955
PkrI GCNGC 3 cut(s) 529, 856, 1420
PleI GAGTC 3 cut(s) 835, 947, 1484
PpsI GAGTC 3 cut(s) 835, 947, 1484
Ppu21I YACGTR 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 185
PshBI ATTAAT 2 cut(s) 17, 1014
Psp124BI GAGCTC 1 cut(s) 868
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 640
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 640
PspLI CGTACG 1 cut(s) 438
PspN4I GGNNCC 3 cut(s) 341, 897, 1099
PspPI GGNCC 2 cut(s) 185, 339
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 3 cut(s) 460, 895, 968
RruI TCGCGA 2 cut(s) 608, 678
RsaI GTAC 6 cut(s) 288, 440, 452, 1031, 1163, 1382
RsaNI GTAC 6 cut(s) 287, 439, 451, 1030, 1162, 1381
RseI CAYNNNNRTG 5 cut(s) 26, 59, 82, 372, 1212
SacI GAGCTC 1 cut(s) 868
SaqAI TTAA 8 cut(s) 17, 663, 728, 1014, 1116, 1124, 1203, 1517
SatI GCNGC 3 cut(s) 528, 855, 1419
Sau96I GGNCC 2 cut(s) 185, 339
SchI GAGTC 3 cut(s) 836, 948, 1484
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 1 cut(s) 868
SfaNI GCATC 2 cut(s) 354, 1288
SfcI CTRYAG 1 cut(s) 754
SinI GGWCC 2 cut(s) 185, 339
SmiMI CAYNNNNRTG 5 cut(s) 26, 59, 82, 372, 1212
SmlI CTYRAG 3 cut(s) 867, 1276, 1472
SmoI CTYRAG 3 cut(s) 867, 1276, 1472
Sse9I AATT 2 cut(s) 1195, 1405
SsiI CCGC 4 cut(s) 89, 164, 343, 536
SspMI CTAG 2 cut(s) 1173, 1335
SstI GAGCTC 1 cut(s) 868
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 4 cut(s) 450, 742, 1102, 1113
TaiI ACGT 4 cut(s) 444, 587, 605, 1031
TaqI TCGA 8 cut(s) 387, 432, 484, 692, 830, 926, 1151, 1349
TaqII GACCGA 1 cut(s) 710
TasI AATT 2 cut(s) 1195, 1405
TatI WGTACW 2 cut(s) 286, 1161
TfiI GAWTC 2 cut(s) 384, 1091
Tru1I TTAA 8 cut(s) 17, 663, 728, 1014, 1116, 1124, 1203, 1517
Tru9I TTAA 8 cut(s) 17, 663, 728, 1014, 1116, 1124, 1203, 1517
TscAI CASTG 4 cut(s) 453, 461, 581, 1243
TseFI GTSAC 4 cut(s) 49, 442, 713, 1102
TseI GCWGC 3 cut(s) 527, 854, 1418
Tsp45I GTSAC 4 cut(s) 49, 442, 713, 1102
TspDTI ATGAA 7 cut(s) 171, 311, 390, 467, 1208, 1222, 1487
TspGWI ACGGA 1 cut(s) 888
TspRI CASTG 4 cut(s) 453, 461, 581, 1243
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 185, 339
VspI ATTAAT 2 cut(s) 17, 1014
XceI RCATGY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 2 cut(s) 1173, 1335
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.