Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007654

Physical Location & Seq

Genomic Coordinates Forward (+)

67103157 .. 67107800

Gene Structure 4644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG362200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGGGGCAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTTATCGGAGTCTGAGTCGGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGTATGAAGGCGCAGTAAAAGAGGATGGGAGGGGGCCTTCTGTATGGGACATTTTTTCACACACTTTTGGTAAAATAACTGATTTCAGTAATGCAGATGTTGCTGTGGATCAGTATCACCTTTATGATGCAAATGTGCAACTTATGAAGGATATGGGAATGGATGCTTATAGGTTTTCGATATCCTGGTCTCGGATTTTCCCCAATGGAACGGGGCAAATTAATCAGGCAGGGGTTGATCACTACAATAAACTCATCAATTCATTGCTAGCAAAAGGAATTGAACCGTACGTAACCCTCTACCACTGGGATCTTCCTCAAGCCTTGGAAGACAGATACATTGGGTGGCTTGACGCTCAAATCATAAAGGACTTTGCAGTATATGCGGAGACATGCTTTCAGAAATTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACACACATTTGCTGTGCAAGGATATGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTATCCTACTGCACCTTTTCTGTAGGGCCGGAAACTCTGCGACTGAGCCTTACATAGTTGCTCACAATGTCATCCTTTCTCATGCAACTGTTGCCGACATTTACAGGAAAAAGTATAAGTCAAAACAAAAAGGATCAATTGGGGCATCATTTGATGTTATTTGGTATCGATCGGCAACAAACTCCACAGCAGACATTGAAGCAACTCAGAGAGCCCAAGATTTTCAGCTTGGATGGTTTCTTGACCCATTTATGTTTGGGAATTATCCATTCTCTATGAGAAGTAGAGTTGGAAGCCGGCTGCCAAAGTTTTCCAAATCTGAGTCTACTTTAATCAAGGGGTCATTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGCCAGTAACGATTCTATAGTCAGACTACTGAATGACTCTCTATCAGACTCTGGTGCCATTACCCTTCGTAAGTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008422 GO:0009507 GO:0009536 GO:0015925 GO:0015926 GO:0016787 GO:0016798 GO:0033907 GO:0042973 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0071704 GO:0080079 GO:0080083 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

366

Amino Acids

41.04

Weight (kDa)

6.79

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	30 - 345	1.4e-114	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26560
fragaria_vesca	FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310 FvH4_4g30310
malus_domestica	MD13G1064200.v1.1 MD13G1064300.v1.1 MD16G1062800.v1.1
prunus_persica	Prupe.1G284600_v2.0.a1
pyrus_communis	pycom16g05490
rosa_chinensis	RchiOBHm_Chr4g0438611
rosa_laevigata	RLG00000006347
rosa_multiflora	Rmu_sc0002327.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379600
rosa_rugosa	Rorug04G0311700 Rorug04G0311800
rosa_samantha	Rh4AG362200 Rh4BG373600 Rh4CG387500
rosa_wichuraiana	Rw0G006690 Rw0G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	622, 1073
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	4 cut(s)	252, 453, 572, 778
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	419, 574, 836
AjnI	CCWGG	3 cut(s)	320, 618, 625
AluBI	AGCT	2 cut(s)	93, 865
AluI	AGCT	2 cut(s)	93, 865
Alw26I	GTCTC	3 cut(s)	330, 518, 620
AlwI	GGATC	4 cut(s)	252, 453, 572, 778
AlwNI	CAGNNNCTG	1 cut(s)	1070
AoxI	GGCC	2 cut(s)	170, 663
ApeKI	GCWGC	2 cut(s)	90, 937
ApoI	RAATTY	1 cut(s)	539
AseI	ATTAAT	2 cut(s)	357, 999
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	170, 663
AsuHPI	GGTGA	4 cut(s)	55, 245, 557, 565
AsuNHI	GCTAGC	1 cut(s)	403
BanI	GGYRCC	2 cut(s)	622, 1073
BanII	GRGCYC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	102, 924
BccI	CCATC	2 cut(s)	155, 864
BciT130I	CCWGG	3 cut(s)	322, 620, 627
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	330, 518, 620
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	658, 1035
BisI	GCNGC	2 cut(s)	91, 938
BlsI	GCNGC	2 cut(s)	92, 939
Bme1390I	CCNGG	3 cut(s)	322, 620, 627
BmgT120I	GGNCC	2 cut(s)	170, 663
BmiI	GGNNCC	3 cut(s)	171, 624, 1075
BmrFI	CCNGG	3 cut(s)	322, 620, 627
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	4 cut(s)	253, 289, 623, 791
BmtI	GCTAGC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	805
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	330, 620
BsaJI	CCNNGG	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	933
Bse1I	ACTGG	4 cut(s)	136, 446, 566, 1023
Bse3DI	GCAATG	2 cut(s)	18, 398
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	322, 620, 627
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	4 cut(s)	166, 304, 708, 875
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	2 cut(s)	18, 398
BseMII	CTCAG	4 cut(s)	60, 672, 857, 948
BseNI	ACTGG	4 cut(s)	136, 446, 566, 1023
BseXI	GCAGC	2 cut(s)	102, 924
BsgI	GTGCAG	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	809
BshFI	GGCC	2 cut(s)	172, 665
BshNI	GGYRCC	2 cut(s)	622, 1073
BshVI	ATCGAT	1 cut(s)	805
BsiEI	CGRYCG	1 cut(s)	809
BsiSI	CCGG	2 cut(s)	666, 934
BsiWI	CGTACG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	130, 197
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	3 cut(s)	330, 518, 620
BsmFI	GGGAC	2 cut(s)	130, 197
BsnI	GGCC	2 cut(s)	172, 665
Bso31I	GGTCTC	2 cut(s)	330, 620
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	2 cut(s)	172, 665
BspCNI	CTCAG	4 cut(s)	61, 673, 856, 949
BspDI	ATCGAT	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	171, 624, 1075
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	4 cut(s)	252, 453, 572, 778
BspT107I	GGYRCC	2 cut(s)	622, 1073
BspTNI	GGTCTC	2 cut(s)	330, 620
BsrDI	GCAATG	2 cut(s)	18, 398
BsrFI	RCCGGY	1 cut(s)	933
BsrI	ACTGG	4 cut(s)	136, 446, 566, 1023
BssAI	RCCGGY	1 cut(s)	933
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	3 cut(s)	322, 620, 627
Bst4CI	ACNGT	2 cut(s)	423, 727
BstAPI	GCANNNNNTGC	3 cut(s)	236, 518, 728
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	405, 935
BstDEI	CTNAG	4 cut(s)	69, 681, 843, 957
BstF5I	GGATG	4 cut(s)	166, 304, 708, 875
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	6 cut(s)	247, 376, 448, 567, 773, 809
BstMAI	GTCTC	3 cut(s)	330, 518, 620
BstMBI	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
BstMCI	CGRYCG	1 cut(s)	809
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 236, 518, 728
BstNI	CCWGG	3 cut(s)	322, 620, 627
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	3 cut(s)	320, 618, 625
BstSFI	CTRYAG	2 cut(s)	658, 1035
BstSNI	TACGTA	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	102, 924
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	172, 665
BsuTUI	ATCGAT	1 cut(s)	805
BtsCI	GGATG	4 cut(s)	166, 304, 708, 875
BtsIMutI	CAGTG	2 cut(s)	439, 559
Cac8I	GCNNGC	2 cut(s)	405, 935
CaiI	CAGNNNCTG	1 cut(s)	1070
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	933
Cfr13I	GGNCC	2 cut(s)	170, 663
ClaI	ATCGAT	1 cut(s)	805
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	528, 719
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	69, 681, 843, 957
DpnI	GATC	6 cut(s)	246, 375, 447, 566, 772, 808
DpnII	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
Eco105I	TACGTA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	853
Eco31I	GGTCTC	2 cut(s)	330, 620
Eco32I	GATATC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	320, 618, 625
EcoRV	GATATC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	531, 722
FaqI	GGGAC	2 cut(s)	130, 197
FatI	CATG	2 cut(s)	527, 718
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	2 cut(s)	91, 938
FokI	GGATG	4 cut(s)	173, 311, 695, 882
FriOI	GRGCYC	1 cut(s)	853
Fsp4HI	GCNGC	2 cut(s)	91, 938
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	91, 938
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	172, 665
HapII	CCGG	2 cut(s)	666, 934
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	531, 722
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	6 cut(s)	65, 71, 959, 1031, 1055, 1067
HpaII	CCGG	2 cut(s)	666, 934
HphI	GGTGA	4 cut(s)	55, 245, 557, 565
Hpy166II	GTNNAC	1 cut(s)	963
Hpy188I	TCNGA	9 cut(s)	64, 70, 76, 330, 537, 846, 958, 1043, 1066
Hpy188III	TCNNGA	1 cut(s)	878
Hpy8I	GTNNAC	1 cut(s)	963
HpyAV	CCTTC	6 cut(s)	137, 142, 183, 277, 1024, 1094
HpyCH4III	ACNGT	2 cut(s)	423, 727
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	7 cut(s)	230, 266, 274, 512, 598, 649, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 236, 518, 728
HpyF3I	CTNAG	4 cut(s)	69, 681, 843, 957
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	531, 722
HspAI	GCGC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	933
KroNI	GCCGGC	1 cut(s)	935
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
Lsp1109I	GCAGC	2 cut(s)	102, 924
LweI	GCATC	4 cut(s)	253, 289, 623, 791
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	4 cut(s)	427, 545, 1025, 1092
MalI	GATC	6 cut(s)	246, 375, 447, 566, 772, 808
MboI	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
MboII	GAAGA	4 cut(s)	117, 440, 476, 642
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	6 cut(s)	354, 394, 414, 539, 774, 898
MlyI	GAGTC	5 cut(s)	74, 80, 968, 1049, 1061
MmeI	TCCRAC	2 cut(s)	54, 907
MnlI	CCTC	6 cut(s)	8, 80, 151, 159, 443, 462
MroNI	GCCGGC	1 cut(s)	933
MseI	TTAA	4 cut(s)	81, 357, 968, 999
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	2 cut(s)	666, 934
MspR9I	CCNGG	3 cut(s)	322, 620, 627
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	322, 620, 627
MwoI	GCNNNNNNNGC	4 cut(s)	128, 236, 518, 728
NaeI	GCCGGC	1 cut(s)	935
NdeII	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
NgoMIV	GCCGGC	1 cut(s)	933
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	2 cut(s)	531, 722
NlaIV	GGNNCC	3 cut(s)	171, 624, 1075
NmuCI	GTSAC	2 cut(s)	545, 1092
NspI	RCATGY	1 cut(s)	531
PdiI	GCCGGC	1 cut(s)	935
PfeI	GAWTC	1 cut(s)	1031
Pfl23II	CGTACG	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	92, 939
Ple19I	CGATCG	1 cut(s)	809
PleI	GAGTC	5 cut(s)	73, 79, 967, 1049, 1061
PpsI	GAGTC	5 cut(s)	73, 79, 967, 1049, 1061
Ppu21I	YACGTR	1 cut(s)	427
PshBI	ATTAAT	2 cut(s)	357, 999
Psp6I	CCWGG	3 cut(s)	320, 618, 625
PspGI	CCWGG	3 cut(s)	320, 618, 625
PspLI	CGTACG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	171, 624, 1075
PspPI	GGNCC	2 cut(s)	170, 663
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	809
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	81, 357, 968, 999
SatI	GCNGC	2 cut(s)	91, 938
Sau3AI	GATC	6 cut(s)	244, 373, 445, 564, 770, 806
Sau96I	GGNCC	2 cut(s)	170, 663
SchI	GAGTC	5 cut(s)	74, 80, 968, 1049, 1061
ScrFI	CCNGG	3 cut(s)	322, 620, 627
SduI	GDGCHC	1 cut(s)	853
SetI	ASST	9 cut(s)	45, 95, 258, 311, 429, 616, 654, 867, 1016
SfaNI	GCATC	4 cut(s)	253, 289, 623, 791
SfcI	CTRYAG	2 cut(s)	658, 1035
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
SnaBI	TACGTA	1 cut(s)	427
Sse9I	AATT	6 cut(s)	354, 394, 414, 539, 774, 898
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	320, 618, 625
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	423, 727
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	314, 805
TasI	AATT	6 cut(s)	354, 394, 414, 539, 774, 898
TfiI	GAWTC	1 cut(s)	1031
Tru1I	TTAA	4 cut(s)	81, 357, 968, 999
Tru9I	TTAA	4 cut(s)	81, 357, 968, 999
TscAI	CASTG	2 cut(s)	446, 566
TseFI	GTSAC	2 cut(s)	545, 1092
TseI	GCWGC	2 cut(s)	90, 937
Tsp45I	GTSAC	2 cut(s)	545, 1092
TspDTI	ATGAA	3 cut(s)	156, 296, 387
TspRI	CASTG	2 cut(s)	446, 566
VspI	ATTAAT	2 cut(s)	357, 999
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	962
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.