FvH4_4g30310

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
30007904 .. 30013202
5299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30310.t1

Sequence Viewer

Length: 1512 bp
ATGGGGTGGAAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTCATCACAGTCTAATTCAGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGTATGAAGGCGCAGTAAAAGAGGATGGAAGGGGGCCTTCTGTATGGGACATTTTTTCACACACTTTTGGCAAAATAACTGATTTCAGTAATGCTGATGTTGCTGTGGATCAGTATCACCTTTATGATGGAGATGTACAACTTATGAAGGATATGGGAATGGATGCGTATAGGTTTTCGATATCCTGGTCTCGGATATTCCCCAATGGAACTGGGCAAATCAATCAGGCAGGGGTTGATCACTACAACAATCTCATTAATTCATTGCTAGCGAAAGGAATTGAACCGTACGTAACCCTCTACCACTGGGATCTTCCTCAAGCCTTGGAAGACAGATACACTGGGTGGCTTGACGCTCAAATCATACAGGACTTTGCAGTATACGCGGAGACATGCTTTCAGAAATTCGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACACACATTTGCTGTACAAGGATACGATGTAGGTCTCCAGGCACCAGGAAGATGCTCTCTCCTAGGCCGCCTTTTCTGTAGAGCCGGAAACTCTGCAACTGAGCCTTACATAGTTGCTCACAATGTCATCCTTTCTCATGCAACTGTTGCCGACATTTACAGGAAAAAGTATAAGCCAAAACAACGAGGATCAATTGGGGCATCATTTGATGTTATTTGGTATCGATCAGCAACAAACTCTACAGCAGACATTGAAGCAACTGAAAGAGCCCAAGATTTTCAGCTTGGCTGGTTTCTTGACCCTTTCATTTTTGGGGATTATCCATTCTCTATGAGAAGTAGAGTCGGAAGCCGTCTGCCAAAGTTTTCCAAATCTGAGTCCACTTTAATCAAGGGGTCATTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGCCAGTAACGATTCTTCTCATATTATCGGACTACTGAATGACTCCCTATCAGACTCTGGTGCCATTGCCCTTCCTTTCAAAGATGGAAAAGCTATTGGAGATAAGGCAAATTCGATATGGTTATACATAGTGCCTGAGGGGATGAGAAGCTTAATGAACTACATCAAGAAAAAGTATGGCAATCCTCCGGTGCTTATCACTGAGAATGGCATGGACGACCCAAATAGCCCATTCATTTCCCTCAAGGATGCTCTAAAGGATGAGAAAAGGATCAGTTACCACCGTGACTATTTGTCAAACTTGCTAGCTTCAATCAAAGAAGATGGGTGCAATGTGAACGGTTATTTTGCATGGTCTCTACTGGATAACTGGGAGTGGGGTGCAGGATACACTTCAAGATTTGGTCTCTATTTCATTGACTATAAGGACAAGCTCAAGAGATACCCCAAGGACTCTGTTCAATGGTTCAAGAACTTCTTAACTTCAACTTGA

Protein Analysis

504

Amino Acids

56.84

Weight (kDa)

6.6

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 30 - 501 3e-158 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 1079
AccI GTMKAC 1 cut(s) 516
AccII CGCG 1 cut(s) 521
AciI CCGC 2 cut(s) 521, 649
AclWI GGATC 5 cut(s) 252, 453, 572, 778, 1298
AcsI RAATTY 2 cut(s) 539, 1129
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 3 cut(s) 273, 425, 597
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 9 cut(s) 419, 574, 836, 1099, 1332, 1416, 1481, 1489, 1506
AhdI GACNNNNNGTC 1 cut(s) 1312
AjnI CCWGG 3 cut(s) 320, 618, 625
AluBI AGCT 6 cut(s) 93, 865, 1112, 1170, 1328, 1453
AluI AGCT 6 cut(s) 93, 865, 1112, 1170, 1328, 1453
Alw26I GTCTC 5 cut(s) 330, 518, 620, 1380, 1430
AlwI GGATC 5 cut(s) 252, 453, 572, 778, 1298
AlwNI CAGNNNCTG 1 cut(s) 1076
AoxI GGCC 2 cut(s) 170, 646
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 2 cut(s) 539, 1129
AseI ATTAAT 2 cut(s) 393, 999
AspA2I CCTAGG 1 cut(s) 643
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 4 cut(s) 55, 245, 557, 565
AsuNHI GCTAGC 2 cut(s) 403, 1324
AvrII CCTAGG 1 cut(s) 643
AxyI CCTNAGG 1 cut(s) 1155
BanI GGYRCC 2 cut(s) 622, 1079
BanII GRGCYC 1 cut(s) 853
BarI GAAGNNNNNNTAC 2 cut(s) 1018, 1050
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 102
BccI CCATC 4 cut(s) 155, 257, 1097, 1337
BceAI ACGGC 1 cut(s) 918
BciT130I CCWGG 3 cut(s) 322, 620, 627
BciVI GTATCC 2 cut(s) 596, 1400
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 5 cut(s) 330, 518, 620, 1380, 1430
BfaI CTAG 3 cut(s) 404, 644, 1325
BfmI CTRYAG 2 cut(s) 658, 822
BfuI GTATCC 2 cut(s) 596, 1400
BisI GCNGC 2 cut(s) 91, 649
BlnI CCTAGG 1 cut(s) 643
BlsI GCNGC 2 cut(s) 92, 650
Bme1390I CCNGG 3 cut(s) 322, 620, 627
BmeRI GACNNNNNGTC 1 cut(s) 1312
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 171, 624, 1081
BmrFI CCNGG 3 cut(s) 322, 620, 627
BmrI ACTGGG 4 cut(s) 357, 451, 486, 1399
BmsI GCATC 4 cut(s) 289, 623, 791, 1258
BmtI GCTAGC 2 cut(s) 407, 1328
BmuI ACTGGG 4 cut(s) 357, 451, 486, 1399
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 3 cut(s) 438, 1247, 1439
Bsa29I ATCGAT 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 4 cut(s) 330, 620, 1380, 1430
BsaJI CCNNGG 3 cut(s) 459, 643, 1467
BsaWI WCCGGW 1 cut(s) 1207
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 8 cut(s) 136, 352, 446, 481, 566, 1023, 1386, 1394
Bse21I CCTNAGG 1 cut(s) 1155
Bse3DI GCAATG 4 cut(s) 18, 398, 1083, 1357
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 3 cut(s) 322, 620, 627
BseCI ATCGAT 1 cut(s) 805
BseDI CCNNGG 3 cut(s) 459, 643, 1467
BseGI GGATG 6 cut(s) 166, 304, 708, 1167, 1273, 1285
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 4 cut(s) 18, 398, 1083, 1357
BseMII CTCAG 4 cut(s) 672, 948, 1146, 1212
BseNI ACTGG 8 cut(s) 136, 352, 446, 481, 566, 1023, 1386, 1394
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 1422
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 2 cut(s) 172, 648
BshNI GGYRCC 2 cut(s) 622, 1079
BshVI ATCGAT 1 cut(s) 805
BsiSI CCGG 2 cut(s) 666, 1208
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 130, 197
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 5 cut(s) 330, 518, 620, 1380, 1430
BsmFI GGGAC 2 cut(s) 130, 197
BsnI GGCC 2 cut(s) 172, 648
Bso31I GGTCTC 4 cut(s) 330, 620, 1380, 1430
Bsp1286I GDGCHC 1 cut(s) 853
Bsp1407I TGTACA 2 cut(s) 271, 595
Bsp143I GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
BspACI CCGC 2 cut(s) 521, 649
BspANI GGCC 2 cut(s) 172, 648
BspCNI CTCAG 4 cut(s) 673, 949, 1147, 1213
BspDI ATCGAT 1 cut(s) 805
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 3 cut(s) 171, 624, 1081
BspOI GCTAGC 2 cut(s) 407, 1328
BspPI GGATC 5 cut(s) 252, 453, 572, 778, 1298
BspT107I GGYRCC 2 cut(s) 622, 1079
BspTNI GGTCTC 4 cut(s) 330, 620, 1380, 1430
BsrDI GCAATG 4 cut(s) 18, 398, 1083, 1357
BsrGI TGTACA 2 cut(s) 271, 595
BsrI ACTGG 8 cut(s) 136, 352, 446, 481, 566, 1023, 1386, 1394
BssECI CCNNGG 3 cut(s) 459, 643, 1467
BssMI GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 3 cut(s) 459, 643, 1467
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 3 cut(s) 322, 620, 627
Bst4CI ACNGT 5 cut(s) 66, 423, 727, 1304, 1361
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 728
BstAUI TGTACA 2 cut(s) 271, 595
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 405, 1326
BstDEI CTNAG 4 cut(s) 681, 957, 1155, 1221
BstF5I GGATG 6 cut(s) 166, 304, 708, 1167, 1273, 1285
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 7 cut(s) 247, 376, 448, 567, 773, 809, 1293
BstMAI GTCTC 5 cut(s) 330, 518, 620, 1380, 1430
BstMBI GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
BstMWI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
BstNI CCWGG 3 cut(s) 322, 620, 627
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 3 cut(s) 320, 618, 625
BstSFI CTRYAG 2 cut(s) 658, 822
BstSNI TACGTA 1 cut(s) 427
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BstZ17I GTATAC 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 805
Bsu36I CCTNAGG 1 cut(s) 1155
BsuI GTATCC 2 cut(s) 596, 1400
BsuRI GGCC 2 cut(s) 172, 648
BsuTUI ATCGAT 1 cut(s) 805
BtsCI GGATG 6 cut(s) 166, 304, 708, 1167, 1273, 1285
BtsIMutI CAGTG 4 cut(s) 439, 474, 559, 1218
Cac8I GCNNGC 2 cut(s) 405, 1326
CaiI CAGNNNCTG 1 cut(s) 1076
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 805
CseI GACGC 1 cut(s) 497
Csp6I GTAC 3 cut(s) 272, 424, 596
CviAII CATG 4 cut(s) 528, 719, 1231, 1371
CviQI GTAC 3 cut(s) 272, 424, 596
DdeI CTNAG 4 cut(s) 681, 957, 1155, 1221
DpnI GATC 7 cut(s) 246, 375, 447, 566, 772, 808, 1292
DpnII GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
DraIII CACNNNGTG 1 cut(s) 480
DriI GACNNNNNGTC 1 cut(s) 1312
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 1312
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 427
Eco130I CCWWGG 3 cut(s) 459, 643, 1467
Eco24I GRGCYC 1 cut(s) 853
Eco31I GGTCTC 4 cut(s) 330, 620, 1380, 1430
Eco32I GATATC 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 1155
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 320, 618, 625
EcoRV GATATC 1 cut(s) 318
EcoT14I CCWWGG 3 cut(s) 459, 643, 1467
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 3 cut(s) 459, 643, 1467
FaeI CATG 4 cut(s) 531, 722, 1234, 1374
FalI AAGNNNNNCTT 3 cut(s) 157, 189, 1481
FaqI GGGAC 2 cut(s) 130, 197
FatI CATG 4 cut(s) 527, 718, 1230, 1370
FbaI TGATCA 1 cut(s) 373
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 91, 649
FokI GGATG 6 cut(s) 173, 311, 695, 1174, 1280, 1292
FriOI GRGCYC 1 cut(s) 853
Fsp4HI GCNGC 2 cut(s) 91, 649
FspBI CTAG 3 cut(s) 404, 644, 1325
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 91, 649
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 172, 648
HapII CCGG 2 cut(s) 666, 1208
HgaI GACGC 1 cut(s) 497
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 531, 722, 1234, 1374
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 1168
HinfI GANTC 6 cut(s) 924, 959, 1031, 1061, 1073, 1472
HpaII CCGG 2 cut(s) 666, 1208
HphI GGTGA 4 cut(s) 55, 245, 557, 565
Hpy166II GTNNAC 3 cut(s) 517, 963, 1357
Hpy188I TCNGA 7 cut(s) 76, 330, 537, 929, 958, 1049, 1072
Hpy188III TCNNGA 5 cut(s) 878, 1186, 1416, 1456, 1489
Hpy8I GTNNAC 3 cut(s) 517, 963, 1357
HpyAV CCTTC 7 cut(s) 137, 142, 159, 183, 277, 1024, 1100
HpyCH4III ACNGT 5 cut(s) 66, 423, 727, 1304, 1361
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 6 cut(s) 512, 677, 722, 1350, 1370, 1403
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
HpyF3I CTNAG 4 cut(s) 681, 957, 1155, 1221
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 4 cut(s) 531, 722, 1234, 1374
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 4 cut(s) 289, 623, 791, 1258
MaeI CTAG 3 cut(s) 404, 644, 1325
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 5 cut(s) 427, 545, 1025, 1295, 1304
MalI GATC 7 cut(s) 246, 375, 447, 566, 772, 808, 1292
MboI GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
MboII GAAGA 7 cut(s) 22, 117, 440, 476, 642, 1026, 1352
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 853
MluCI AATT 6 cut(s) 70, 394, 414, 539, 774, 1129
MlyI GAGTC 5 cut(s) 933, 968, 1055, 1067, 1466
MmeI TCCRAC 1 cut(s) 907
MnlI CCTC 9 cut(s) 8, 80, 151, 443, 462, 761, 1150, 1215, 1271
MseI TTAA 6 cut(s) 81, 393, 968, 999, 1172, 1499
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 2 cut(s) 666, 1208
MspR9I CCNGG 3 cut(s) 322, 620, 627
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 3 cut(s) 322, 620, 627
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 4 cut(s) 128, 236, 518, 728
NdeII GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
NheI GCTAGC 2 cut(s) 403, 1324
NlaIII CATG 4 cut(s) 531, 722, 1234, 1374
NlaIV GGNNCC 3 cut(s) 171, 624, 1081
NmuCI GTSAC 2 cut(s) 545, 1304
NspI RCATGY 1 cut(s) 531
PfeI GAWTC 1 cut(s) 1031
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 2 cut(s) 92, 650
PleI GAGTC 5 cut(s) 932, 967, 1055, 1067, 1466
PpsI GAGTC 5 cut(s) 932, 967, 1055, 1067, 1466
Ppu21I YACGTR 1 cut(s) 427
PshBI ATTAAT 2 cut(s) 393, 999
Psp6I CCWGG 3 cut(s) 320, 618, 625
PspGI CCWGG 3 cut(s) 320, 618, 625
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 3 cut(s) 171, 624, 1081
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 3 cut(s) 273, 425, 597
RsaNI GTAC 3 cut(s) 272, 424, 596
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 6 cut(s) 81, 393, 968, 999, 1172, 1499
SatI GCNGC 2 cut(s) 91, 649
Sau3AI GATC 7 cut(s) 244, 373, 445, 564, 770, 806, 1290
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 5 cut(s) 933, 968, 1055, 1067, 1466
ScrFI CCNGG 3 cut(s) 322, 620, 627
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 4 cut(s) 289, 623, 791, 1258
SfcI CTRYAG 2 cut(s) 658, 822
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 453, 1262, 1454
SmoI CTYRAG 3 cut(s) 453, 1262, 1454
SnaBI TACGTA 1 cut(s) 427
Sse9I AATT 6 cut(s) 70, 394, 414, 539, 774, 1129
SsiI CCGC 2 cut(s) 521, 649
SspMI CTAG 3 cut(s) 404, 644, 1325
StyD4I CCNGG 3 cut(s) 320, 618, 625
StyI CCWWGG 3 cut(s) 459, 643, 1467
TaaI ACNGT 5 cut(s) 66, 423, 727, 1304, 1361
TaiI ACGT 1 cut(s) 429
TaqI TCGA 3 cut(s) 314, 805, 1133
TasI AATT 6 cut(s) 70, 394, 414, 539, 774, 1129
TatI WGTACW 2 cut(s) 271, 595
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 6 cut(s) 81, 393, 968, 999, 1172, 1499
Tru9I TTAA 6 cut(s) 81, 393, 968, 999, 1172, 1499
TscAI CASTG 4 cut(s) 446, 481, 566, 1225
TseFI GTSAC 2 cut(s) 545, 1304
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 2 cut(s) 545, 1304
TspDTI ATGAA 8 cut(s) 48, 156, 296, 387, 877, 1190, 1243, 1423
TspRI CASTG 4 cut(s) 446, 481, 566, 1225
VspI ATTAAT 2 cut(s) 393, 999
XapI RAATTY 2 cut(s) 539, 1129
XceI RCATGY 1 cut(s) 531
XmaJI CCTAGG 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 404, 644, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.