Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004231

Physical Location & Seq

Genomic Coordinates Forward (+)

30875135 .. 30879403

Gene Structure 4269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G323300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGACAGTCATTCTGAACCGTCCATTCCCCTCTTTGGCCGCCCCAAACCGACGCATCACCAAATCCAGACCGTCCACTCCACCAAGCATCTCATGCTTCAATCCCAAACATTCCTTCAAGAGAGACTACACGAGCGTAATGATAGTCCCAACCGGGATAGGAGCCGCCATTGGTGGCTACGCCGGCGACGCTTTGCCTGTGGCTCGCACTCTCTCCTCCGTCGTCGATTGCCTTATCACACACCCCAACGTGCTGAATGCAGCAATGCTCTACTGGCCTATGCCTAATGCTTTATACGTTGAAGGTTATGCTCTTGACCGCTTTGCAGAAGGCTCATGGGGCCTCATGCCTGTTCACCAAAACAGGGTGGGTTTGGTTCTTGATTCTGGAATAGAAGAAGAGCTTCGAGTTCGCCATTTACAAGTGGCCGATGCTGCAAGGGCTTCCCTTGGCTTGCCTGTGGTTGAATATGTTGTCACTGACACCCCTTTACAGGTAGAGAAGTGGATTGATCCAAAAAGTGGGCAATCAACTGGGAGGATTAAGCACCCTGATTCACTATTGAGGGCTGTGCAGGCTTTACTTAAACGCTCTCAAGTAAATGCTATTGCAGTTGTTGGCCGCTTCACAGATGATGATGATGTTCAAGACACAGATGATTATCGAAAAGGGATGGGAATTGATCTATTGGCAGGGGTTGAGGCAGTTATAAGCCATCTAGTGGTGAAGGAATTCCAAATTCCTTGTGCACATGCTCCTGCCTTGTCACCTTTGCCCCTGAGCCCATCTTTATGCCCAAAATCAGCTGCTGAGGAGTTGGGATACACATTCTTGCCATGTGTGCTTGCTGGGCTTAGTAATGCACCACAGTATTTGGTCAAGAACTCTGAGTCTGAGAATGGTTGCATACTGGCAAGTGATGTTGATAGCGTCATCCTTCCTGTAGATGCTTTTGGAGGAGACGGCGTTCTTGCTTTTGCACGAAGCAAAAGAAACAAGCCACTTATAATTGCTGTGGAGGAAAATGAAACAGTCCTTGATGATACACCAGATAAAGTTGGGGTTGAAGCAGTCAAGGTCTCAAACTATTGGGAAGCAATTGGTGTTATTGCAGCTCACAAGGCCGGAGTAAATCCGCATTCTTTACGAAGAAATAGAATTAAGAATCTTCGATACACTTCTCTGTTGCCCTCTAATGGTTATGCCATTAGAGTACCACAGCAATTGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3326

Protein Analysis

412

Amino Acids

44.42

Weight (kDa)

6.32

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004231)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32280 FvH4_4g32280 FvH4_4g32280 FvH4_4g32280 FvH4_4g32280
malus_domestica	MD16G1029600.v1.1
prunus_persica	Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441071
rosa_laevigata	RLG00000006120
rosa_multiflora	Rmu_sc0006317.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382000
rosa_rugosa	Rorug04G0330800 Rorug04G0330900 Rorug04G0331000
rosa_samantha	Rh4AG382400 Rh4BG395900 Rh4CG411000 Rh4DG389000
rosa_wichuraiana	Rw4G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	710, 1007
AccB7I	CCANNNNNTGG	2 cut(s)	521, 721
AciI	CCGC	5 cut(s)	39, 165, 319, 622, 1136
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	3 cut(s)	36, 426, 619
AcsI	RAATTY	2 cut(s)	731, 738
AfaI	GTAC	1 cut(s)	1215
AfiI	CCNNNNNNNGG	6 cut(s)	34, 364, 493, 521, 721, 1196
AgsI	TTSAA	6 cut(s)	100, 118, 302, 467, 647, 1067
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AloI	GAACNNNNNNTCC	2 cut(s)	951, 983
AluBI	AGCT	3 cut(s)	403, 806, 1115
AluI	AGCT	3 cut(s)	403, 806, 1115
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	3 cut(s)	117, 954, 1084
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	6 cut(s)	36, 275, 340, 426, 619, 1122
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	260, 434, 806, 1112
ApoI	RAATTY	2 cut(s)	731, 738
Asp700I	GAANNNNTTC	2 cut(s)	402, 731
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	4 cut(s)	49, 347, 736, 759
BaeGI	GKGCMC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	785
BauI	CACGAG	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	751
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	4 cut(s)	272, 421, 793, 1124
BccI	CCATC	3 cut(s)	667, 723, 793
BceAI	ACGGC	1 cut(s)	979
BciVI	GTATCC	1 cut(s)	815
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	3 cut(s)	117, 954, 1084
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	942
BfuI	GTATCC	1 cut(s)	815
BisI	GCNGC	7 cut(s)	39, 165, 261, 435, 622, 807, 1113
BlsI	GCNGC	7 cut(s)	40, 166, 262, 436, 623, 808, 1114
Bme1390I	CCNGG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	163, 341
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	4 cut(s)	63, 96, 421, 937
BmuI	ACTGGG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	779, 810
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	1084
BsaJI	CCNNGG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	951, 981
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 364, 493, 521, 721, 1196
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	278, 538, 915
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	678, 933
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	6 cut(s)	34, 364, 493, 521, 721, 1196
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	770, 801, 879, 885
BseNI	ACTGG	3 cut(s)	278, 538, 915
BseRI	GAGGAG	3 cut(s)	205, 827, 972
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	272, 421, 793, 1124
BseYI	CCCAGC	1 cut(s)	848
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	6 cut(s)	38, 277, 342, 428, 621, 1124
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	3 cut(s)	153, 183, 1125
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	6 cut(s)	34, 364, 493, 521, 721, 1196
BsmAI	GTCTC	3 cut(s)	117, 954, 1084
BsmBI	CGTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	2 cut(s)	262, 1138
BsnI	GGCC	6 cut(s)	38, 277, 342, 428, 621, 1124
Bso31I	GGTCTC	1 cut(s)	1084
Bsp1286I	GDGCHC	2 cut(s)	751, 785
Bsp143I	GATC	2 cut(s)	511, 682
BspACI	CCGC	5 cut(s)	39, 165, 319, 622, 1136
BspANI	GGCC	6 cut(s)	38, 277, 342, 428, 621, 1124
BspCNI	CTCAG	4 cut(s)	771, 802, 880, 886
BspLI	GGNNCC	2 cut(s)	163, 341
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	1084
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	278, 538, 915
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	511, 682
BssSI	CACGAG	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	130
Bst4CI	ACNGT	5 cut(s)	7, 20, 72, 870, 1033
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstC8I	GCNNGC	5 cut(s)	184, 205, 455, 576, 846
BstDEI	CTNAG	5 cut(s)	779, 810, 854, 888, 894
BstF5I	GGATG	2 cut(s)	678, 933
BstKTI	GATC	2 cut(s)	514, 685
BstMAI	GTCTC	3 cut(s)	117, 954, 1084
BstMBI	GATC	2 cut(s)	511, 682
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	942
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	4 cut(s)	272, 421, 793, 1124
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	6 cut(s)	38, 277, 342, 428, 621, 1124
BtsCI	GGATG	2 cut(s)	678, 933
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	5 cut(s)	184, 205, 455, 576, 846
CaiI	CAGNNNCTG	1 cut(s)	809
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	3 cut(s)	60, 197, 919
Csp6I	GTAC	1 cut(s)	1214
CspCI	CAANNNNNGTGG	3 cut(s)	855, 890, 1206
CviAII	CATG	5 cut(s)	93, 336, 346, 752, 837
CviQI	GTAC	1 cut(s)	1214
DdeI	CTNAG	5 cut(s)	779, 810, 854, 888, 894
DpnI	GATC	2 cut(s)	513, 684
DpnII	GATC	2 cut(s)	511, 682
EaeI	YGGCCR	3 cut(s)	36, 426, 619
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	785
Eco31I	GGTCTC	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	731
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	785
ErhI	CCWWGG	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	954
FaeI	CATG	5 cut(s)	96, 339, 349, 755, 840
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	5 cut(s)	92, 335, 345, 751, 836
Fnu4HI	GCNGC	7 cut(s)	39, 165, 261, 435, 622, 807, 1113
FokI	GGATG	2 cut(s)	685, 920
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	7 cut(s)	39, 165, 261, 435, 622, 807, 1113
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	7 cut(s)	39, 165, 261, 435, 622, 807, 1113
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	6 cut(s)	38, 277, 342, 428, 621, 1124
HapII	CCGG	3 cut(s)	153, 183, 1125
HgaI	GACGC	3 cut(s)	60, 197, 919
Hin1II	CATG	5 cut(s)	96, 339, 349, 755, 840
HinfI	GANTC	4 cut(s)	383, 554, 890, 1165
HpaII	CCGG	3 cut(s)	153, 183, 1125
HphI	GGTGA	4 cut(s)	49, 347, 736, 759
Hpy166II	GTNNAC	3 cut(s)	75, 355, 749
Hpy188I	TCNGA	3 cut(s)	15, 889, 895
Hpy188III	TCNNGA	7 cut(s)	66, 118, 314, 380, 387, 647, 880
Hpy8I	GTNNAC	3 cut(s)	75, 355, 749
Hpy99I	CGWCG	4 cut(s)	54, 191, 224, 227
HpyAV	CCTTC	5 cut(s)	124, 296, 323, 721, 947
HpyCH4III	ACNGT	5 cut(s)	7, 20, 72, 870, 1033
HpyCH4IV	ACGT	2 cut(s)	249, 297
HpyF3I	CTNAG	5 cut(s)	779, 810, 854, 888, 894
HpySE526I	ACGT	2 cut(s)	249, 297
Hsp92II	CATG	5 cut(s)	96, 339, 349, 755, 840
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	511, 682
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	161, 760
Lsp1109I	GCAGC	4 cut(s)	272, 421, 793, 1124
LweI	GCATC	4 cut(s)	63, 96, 421, 937
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	2 cut(s)	249, 297
MaeIII	GTNAC	2 cut(s)	475, 765
MalI	GATC	2 cut(s)	513, 684
MboI	GATC	2 cut(s)	511, 682
MboII	GAAGA	4 cut(s)	407, 410, 1160, 1161
MfeI	CAATTG	2 cut(s)	1098, 1223
MhlI	GDGCHC	2 cut(s)	751, 785
MluCI	AATT	7 cut(s)	678, 731, 738, 1008, 1098, 1158, 1223
MlyI	GAGTC	1 cut(s)	899
MreI	CGCCGGCG	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	2 cut(s)	402, 731
MseI	TTAA	4 cut(s)	543, 585, 1161, 1234
MslI	CAYNNNNRTG	1 cut(s)	790
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	3 cut(s)	153, 183, 1125
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	2 cut(s)	1098, 1223
Mva1269I	GAATGC	2 cut(s)	262, 1138
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	511, 682
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	5 cut(s)	96, 339, 349, 755, 840
NlaIV	GGNNCC	2 cut(s)	163, 341
NmuCI	GTSAC	2 cut(s)	475, 765
NspI	RCATGY	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	2 cut(s)	262, 1138
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	2 cut(s)	402, 731
PfeI	GAWTC	3 cut(s)	383, 554, 1165
PflMI	CCANNNNNTGG	2 cut(s)	521, 721
PkrI	GCNGC	7 cut(s)	40, 166, 262, 436, 623, 808, 1114
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PsiI	TTATAA	2 cut(s)	710, 1007
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	2 cut(s)	163, 341
PspPI	GGNCC	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	809
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	1 cut(s)	1215
RsaNI	GTAC	1 cut(s)	1214
RseI	CAYNNNNRTG	1 cut(s)	790
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	543, 585, 1161, 1234
SatI	GCNGC	7 cut(s)	39, 165, 261, 435, 622, 807, 1113
Sau3AI	GATC	2 cut(s)	511, 682
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	751, 785
SetI	ASST	9 cut(s)	252, 300, 307, 405, 498, 772, 808, 1080, 1117
SfaNI	GCATC	4 cut(s)	63, 96, 421, 937
SfcI	CTRYAG	1 cut(s)	942
SgrAI	CRCCGGYG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	790
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	7 cut(s)	678, 731, 738, 1008, 1098, 1158, 1223
SsiI	CCGC	5 cut(s)	39, 165, 319, 622, 1136
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	5 cut(s)	7, 20, 72, 870, 1033
TaiI	ACGT	2 cut(s)	252, 300
TaqI	TCGA	4 cut(s)	225, 406, 664, 1171
TasI	AATT	7 cut(s)	678, 731, 738, 1008, 1098, 1158, 1223
TauI	GCSGC	3 cut(s)	41, 167, 624
TfiI	GAWTC	3 cut(s)	383, 554, 1165
Tru1I	TTAA	4 cut(s)	543, 585, 1161, 1234
Tru9I	TTAA	4 cut(s)	543, 585, 1161, 1234
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	475, 765
TseI	GCWGC	4 cut(s)	260, 434, 806, 1112
Tsp45I	GTSAC	2 cut(s)	475, 765
TspDTI	ATGAA	1 cut(s)	1041
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	2 cut(s)	521, 721
VneI	GTGCAC	1 cut(s)	747
XapI	RAATTY	2 cut(s)	731, 738
XceI	RCATGY	1 cut(s)	755
XmnI	GAANNNNTTC	2 cut(s)	402, 731
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.