Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004231

Physical Location & Seq

Genomic Coordinates Forward (+)

61856847 .. 61861206

Gene Structure 4360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGACGGTCCTTCTGAGCCGTCCATTCCCTTCCTTCCTGGCCGGCCAAGACCTCCGTATCTTCAAATCCAGACCGTCCATTAAAACAAGCGTCTCATGCCTCACTCCCGGACACTCCTTCAAGAGAGACTACACTAGCGTGATGATAGTCCCGACCGGAGTCGGAGCCGCCATAGGTGGATACGCCGGCGACGCCTTGCCGGTGGCTCGCACTCTCGCCTCCGTCGTCGATTGTCTCATCACTCATCCCAATGTGCTGAATGCAGCAATGCTCTGTTGGCCCATGCCTAATGCTTTGTATGTCGAAGGTTATGCTCTAGACCGATTCGCAGAAGGCTTATGGGCTCTGAAGCCTGTTCACCAGAACAAGGTGGGGTTGGTTCTTGATTGTGGAATGGAAGAAGAGCTTCGCGTTCGTCATTTGCAAGTGGCTGATGCTGCAAGGGCTTCCCTTGGCTTGCCTGTAGTGGAATATGTTGTCACTGACACGCCTTTGCAGGTAGAGAAGTGGATTGATACAAAAAGTGGACAATCAACGGGGAGCATTAAGCACCCTGAATCACTACTGAGGGCTGTGCAGGCTTTAATCAAACGCTCTCAAGTAAATGCCGTTGCAGTTGTTGGACGTTTCCCGGATGATGATTTTGAAGACACTGATGATTATCGACAAGGGATGTTGGGATACACATTCTTGCCTTGTGTGCTTGCTGGCCTTAGTAATGCACCACAATACTTGGTCAAGAACTCTGAGTCCGAGCATGGTTGCATACTGGCAAATGATGTTGATAGTGTCATCCTTCCTATAGATGCTTGTGGAGGACCTGGTGCTCTTGCTTTTGCACAAAGCAAAGCCAATAAGCCCCTTATAATTGCTGTGCAGGAAAATGAAACAGTCCTTGATGACACACCTGATAAAGTTGGCATCGAAGCCATCAATGTCTCAAACTATTGGGAAGCGATTGGTGTTGTTGCAGCTCACAAGGCTGGAGTAAATCCGCAGTCACTACGAAGAAATAGAATTAGCAGTCTTCAACGCGCTTCTCTATTGCCTGCTAATGGTTATGCCGTTCAAAGTGCCACAACAAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3326

Protein Analysis

363

Amino Acids

38.93

Weight (kDa)

5.83

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3326	PF11805	45 - 224	6.9e-86	Protein of unknown function (DUF3326)
DUF3326	PF11805	226 - 336	1.4e-37	Protein of unknown function (DUF3326)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004231)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32280 FvH4_4g32280 FvH4_4g32280 FvH4_4g32280 FvH4_4g32280
malus_domestica	MD16G1029600.v1.1
prunus_persica	Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1 Prupe.1G323300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0441071
rosa_laevigata	RLG00000006120
rosa_multiflora	Rmu_sc0006317.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382000
rosa_rugosa	Rorug04G0330800 Rorug04G0330900 Rorug04G0331000
rosa_samantha	Rh4AG382400 Rh4BG395900 Rh4CG411000 Rh4DG389000
rosa_wichuraiana	Rw4G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
Acc36I	ACCTGC	1 cut(s)	487
AccII	CGCG	2 cut(s)	411, 1035
AciI	CCGC	2 cut(s)	168, 995
AcoI	YGGCCR	2 cut(s)	39, 43
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	367, 1055
AgsI	TTSAA	5 cut(s)	64, 121, 647, 1031, 1070
AjnI	CCWGG	2 cut(s)	36, 820
AleI	CACNNNNGTG	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	2 cut(s)	406, 974
AluI	AGCT	2 cut(s)	406, 974
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	4 cut(s)	97, 120, 239, 943
AoxI	GGCC	4 cut(s)	39, 43, 278, 709
ApeKI	GCWGC	3 cut(s)	263, 437, 971
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	1037
AspS9I	GGNCC	3 cut(s)	7, 279, 818
AsuC2I	CCSGG	2 cut(s)	108, 632
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	7, 818
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	2 cut(s)	654, 1019
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	3 cut(s)	275, 424, 983
BccI	CCATC	1 cut(s)	938
BceAI	ACGGC	3 cut(s)	3, 593, 1049
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	38, 822
BciVI	GTATCC	2 cut(s)	173, 674
BcnI	CCSGG	2 cut(s)	108, 632
BcoDI	GTCTC	4 cut(s)	97, 120, 239, 943
BfaI	CTAG	2 cut(s)	135, 317
BfmI	CTRYAG	2 cut(s)	462, 801
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	2 cut(s)	173, 674
BisI	GCNGC	4 cut(s)	168, 264, 438, 972
BlsI	GCNGC	4 cut(s)	169, 265, 439, 973
Bme1390I	CCNGG	4 cut(s)	38, 108, 632, 822
Bme18I	GGWCC	2 cut(s)	7, 818
BmgT120I	GGNCC	3 cut(s)	7, 279, 818
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	4 cut(s)	38, 108, 632, 822
BmsI	GCATC	3 cut(s)	424, 796, 930
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	2 cut(s)	654, 1019
BpmI	CTGGAG	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	582
BpuMI	CCSGG	2 cut(s)	108, 632
BsaBI	GATNNNNATC	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	451
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 1055
Bse118I	RCCGGY	3 cut(s)	41, 185, 199
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	2 cut(s)	38, 822
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	4 cut(s)	244, 640, 678, 792
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	2 cut(s)	367, 1055
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	5, 557, 738
BseNI	ACTGG	1 cut(s)	774
BseXI	GCAGC	3 cut(s)	275, 424, 983
BsgI	GTGCAG	2 cut(s)	596, 896
Bsh1236I	CGCG	2 cut(s)	411, 1035
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	41, 45, 280, 711
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	6 cut(s)	42, 108, 156, 186, 200, 632
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	367, 1055
BsmAI	GTCTC	4 cut(s)	97, 120, 239, 943
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	4 cut(s)	41, 45, 280, 711
Bsp1286I	GDGCHC	2 cut(s)	346, 829
BspACI	CCGC	2 cut(s)	168, 995
BspANI	GGCC	4 cut(s)	41, 45, 280, 711
BspCNI	CTCAG	3 cut(s)	6, 558, 739
BspFNI	CGCG	2 cut(s)	411, 1035
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	3 cut(s)	41, 185, 199
BsrI	ACTGG	1 cut(s)	774
BssAI	RCCGGY	3 cut(s)	41, 185, 199
BssECI	CCNNGG	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	38, 822
Bst4CI	ACNGT	3 cut(s)	7, 75, 892
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	8 cut(s)	43, 187, 208, 458, 579, 705, 709, 1050
BstDEI	CTNAG	4 cut(s)	14, 566, 713, 747
BstF5I	GGATG	4 cut(s)	244, 640, 678, 792
BstFNI	CGCG	2 cut(s)	411, 1035
BstHHI	GCGC	1 cut(s)	1037
BstMAI	GTCTC	4 cut(s)	97, 120, 239, 943
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 191, 277, 437, 443, 578, 700, 980
BstNI	CCWGG	2 cut(s)	38, 822
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	4 cut(s)	36, 106, 630, 820
BstSFI	CTRYAG	2 cut(s)	462, 801
BstUI	CGCG	2 cut(s)	411, 1035
BstV1I	GCAGC	3 cut(s)	275, 424, 983
BstV2I	GAAGAC	2 cut(s)	654, 1019
BsuI	GTATCC	2 cut(s)	173, 674
BsuRI	GGCC	4 cut(s)	41, 45, 280, 711
BtsCI	GGATG	4 cut(s)	244, 640, 678, 792
BtsIMutI	CAGTG	2 cut(s)	480, 651
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	8 cut(s)	43, 187, 208, 458, 579, 705, 709, 1050
CfoI	GCGC	1 cut(s)	1037
Cfr10I	RCCGGY	3 cut(s)	41, 185, 199
Cfr13I	GGNCC	3 cut(s)	7, 279, 818
CseI	GACGC	2 cut(s)	79, 200
CsiI	ACCWGGT	1 cut(s)	820
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviAII	CATG	3 cut(s)	96, 283, 758
DdeI	CTNAG	4 cut(s)	14, 566, 713, 747
EaeI	YGGCCR	2 cut(s)	39, 43
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	7, 818
Eco57I	CTGAAG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	36, 820
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	99, 286, 761
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	95, 282, 757
Fnu4HI	GCNGC	4 cut(s)	168, 264, 438, 972
FokI	GGATG	4 cut(s)	231, 647, 685, 779
FriOI	GRGCYC	1 cut(s)	346
FseI	GGCCGGCC	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	168, 264, 438, 972
FspBI	CTAG	2 cut(s)	135, 317
GlaI	GCGC	1 cut(s)	1036
GluI	GCNGC	4 cut(s)	168, 264, 438, 972
GsuI	CTGGAG	1 cut(s)	1005
HaeIII	GGCC	4 cut(s)	41, 45, 280, 711
HapII	CCGG	6 cut(s)	42, 108, 156, 186, 200, 632
HgaI	GACGC	2 cut(s)	79, 200
HhaI	GCGC	1 cut(s)	1037
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	99, 286, 761
Hin6I	GCGC	1 cut(s)	1035
HinP1I	GCGC	1 cut(s)	1035
HinfI	GANTC	4 cut(s)	159, 324, 557, 749
HpaII	CCGG	6 cut(s)	42, 108, 156, 186, 200, 632
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	358, 527
Hpy188I	TCNGA	5 cut(s)	15, 164, 348, 748, 754
Hpy188III	TCNNGA	6 cut(s)	69, 121, 151, 317, 383, 739
Hpy8I	GTNNAC	2 cut(s)	358, 527
Hpy99I	CGWCG	3 cut(s)	194, 227, 230
HpyAV	CCTTC	7 cut(s)	20, 39, 43, 127, 299, 326, 806
HpyCH4III	ACNGT	3 cut(s)	7, 75, 892
HpyCH4IV	ACGT	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 191, 277, 437, 443, 578, 700, 980
HpyF3I	CTNAG	4 cut(s)	14, 566, 713, 747
HpySE526I	ACGT	1 cut(s)	625
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	99, 286, 761
HspAI	GCGC	1 cut(s)	1035
KroI	GCCGGC	2 cut(s)	41, 185
KroNI	GCCGGC	2 cut(s)	43, 187
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	164, 540
Lsp1109I	GCAGC	3 cut(s)	275, 424, 983
LweI	GCATC	3 cut(s)	424, 796, 930
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	2 cut(s)	135, 317
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	2 cut(s)	478, 999
MboII	GAAGA	6 cut(s)	52, 410, 413, 659, 1019, 1020
MhlI	GDGCHC	2 cut(s)	346, 829
MluCI	AATT	2 cut(s)	867, 1017
MlyI	GAGTC	2 cut(s)	168, 758
MmeI	TCCRAC	2 cut(s)	142, 601
MnlI	CCTC	5 cut(s)	62, 110, 229, 561, 809
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	2 cut(s)	41, 185
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	81, 546, 584
MslI	CAYNNNNRTG	2 cut(s)	137, 249
MspI	CCGG	6 cut(s)	42, 108, 156, 186, 200, 632
MspR9I	CCNGG	4 cut(s)	38, 108, 632, 822
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	38, 822
MvnI	CGCG	2 cut(s)	411, 1035
MwoI	GCNNNNNNNGC	8 cut(s)	96, 191, 277, 437, 443, 578, 700, 980
NaeI	GCCGGC	2 cut(s)	43, 187
NciI	CCSGG	2 cut(s)	108, 632
NgoMIV	GCCGGC	2 cut(s)	41, 185
NlaIII	CATG	3 cut(s)	99, 286, 761
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	478, 999
OliI	CACNNNNGTG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	265
PdiI	GCCGGC	2 cut(s)	43, 187
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	324, 557
PfoI	TCCNGGA	2 cut(s)	106, 630
PkrI	GCNGC	4 cut(s)	169, 265, 439, 973
PleI	GAGTC	2 cut(s)	167, 757
PpsI	GAGTC	2 cut(s)	167, 757
PpuMI	RGGWCCY	1 cut(s)	818
PshAI	GACNNNNGTC	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	866
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	36, 820
PspGI	CCWGG	2 cut(s)	36, 820
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	7, 279, 818
PspPPI	RGGWCCY	1 cut(s)	818
RigI	GGCCGGCC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	137, 249
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	81, 546, 584
SatI	GCNGC	4 cut(s)	168, 264, 438, 972
Sau96I	GGNCC	3 cut(s)	7, 279, 818
SchI	GAGTC	2 cut(s)	168, 758
ScrFI	CCNGG	4 cut(s)	38, 108, 632, 822
SduI	GDGCHC	2 cut(s)	346, 829
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	424, 796, 930
SfcI	CTRYAG	2 cut(s)	462, 801
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	2 cut(s)	7, 818
SmiMI	CAYNNNNRTG	2 cut(s)	137, 249
SmlI	CTYRAG	1 cut(s)	597
SmoI	CTYRAG	1 cut(s)	597
Sse9I	AATT	2 cut(s)	867, 1017
SsiI	CCGC	2 cut(s)	168, 995
SspMI	CTAG	2 cut(s)	135, 317
StyD4I	CCNGG	4 cut(s)	36, 106, 630, 820
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	3 cut(s)	7, 75, 892
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	4 cut(s)	228, 303, 664, 924
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	867, 1017
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	324, 557
Tru1I	TTAA	3 cut(s)	81, 546, 584
Tru9I	TTAA	3 cut(s)	81, 546, 584
TscAI	CASTG	2 cut(s)	487, 658
TseFI	GTSAC	2 cut(s)	478, 999
TseI	GCWGC	3 cut(s)	263, 437, 971
Tsp45I	GTSAC	2 cut(s)	478, 999
TspDTI	ATGAA	1 cut(s)	900
TspGWI	ACGGA	2 cut(s)	44, 211
TspRI	CASTG	2 cut(s)	487, 658
VpaK11BI	GGWCC	2 cut(s)	7, 818
XbaI	TCTAGA	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	135, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.