Prupe.1G344800_v2.0.a1

UPF0496 protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014732
Physical Location & Seq
Reverse (-)
32284479 .. 32285872
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G344800.1

Sequence Viewer

Length: 1038 bp
ATGTACCGAACGGAAATCTCCAACTTTTCTTCGTTCTCGCCATTTCGCGTGGCTAAGAAACACTCTGTTCCCAACAATTTGGACCTCATCTCACGCTCCTTCGATGACGCTTTGCTTTGCCGCTTGAAAACGCTGACTCCACCGTCGATCAGCCTGTCTTGGCTCTCCAAGGCCGTCGATTTCCTCGCCTTGGCTCAGTCCGAAGCCAGAGTTCTCATCTCCAATCTCAAAGTAGCGGCTCTCGATGATTCGCTTGCTTGGTATTTGGACGACAGCGTCAAGCTCTTGGACCTCTGCAACTCCGTCTCTGCCGACATTGAACGCTTTCGCCAGCGTCGCCTTCTTCTCACCTTCGTTCTTCACCTTCTCGGCGACGGGAATCAGTCTCCGGAGAAGCTCCGTCGAGCCAGCAAAGCTCTCTCCGACTTCGAGCGCTGTGCTTCGGACCTCGGAAAACGGAGCAATGCGGAGGTCTTGGTCAGAGATCTGGCCACGGGGCTCCGCAACGTGCCACGCGGCAAGGCCTCGAGGGTCGGGAAGCTCGTGCGTCGAACCGTGCACGCCGTGGGATTGGTGACTGTGTTCATCGCCGGAGGCGTGGTGGCGACGATCCACGGATCTCCTGAGATGGTAAAGGTCGGAGTGCCGGCGGAGTTTTCATGGGCCGAGTCGTTGAACGAGTTGGAATCGGAGGTGTCGGCCGAGTTGAAACGGCGATTCGGGGGCGAAAAGGACAAGAAACAGAAAGGCCTATTGGAGGAGTTGGAAGACGTGGGGACACGTGTAAGGGAAGTGTGTGAGGTCATTGATGACCTGGCAGGAGTTGCGGTAGAGGAGGAGGAGGAGGAGAAGAAGCGGCTAACCGATGTCGTAAAAGAGCTGGAAAGAGCAACTGGGTCGTTTTCGGATGGGTTGGAGCGGTTGGGTAATGGCGTGAGTGAGATGTTCAATGGTGTTTTGTGTAACAGGAACCACATGCTGGAGAAGGTGAGAGCGAGAGAAAGAGGAGTGGGGCCAAAAGCCATAAACAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

346

Amino Acids

38.19

Weight (kDa)

8.21

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36680
malus_domestica MD13G1008300.v1.1
prunus_persica Prupe.1G344800_v2.0.a1
pyrus_communis pycom13g00680
rosa_chinensis RchiOBHm_Chr4g0446391
rosa_laevigata RLG00000005666
rosa_multiflora Rmu_sc0008360.1_g000003 Rmu_sc0010778.1_g000005 Rmu_sc0025512.1_g000002 Rmu_sc0025513.1_g000001
rosa_roxburghii Rroxscaffold_5G00386830
rosa_rugosa Rorug04G0371000
rosa_samantha Rh4AG432500 Rh4BG441700 Rh4CG459000 Rh4DG440400
rosa_wichuraiana Rw4G036940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 142, 275
AbsI CCTCGAGG 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 979
AccBSI CCGCTC 1 cut(s) 919
AccII CGCG 2 cut(s) 48, 516
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 9 cut(s) 121, 236, 467, 502, 516, 650, 827, 856, 919
AclWI GGATC 2 cut(s) 604, 625
AcoI YGGCCR 2 cut(s) 489, 699
AcvI CACGTG 1 cut(s) 782
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 3 cut(s) 190, 757, 979
AflIII ACRYGT 2 cut(s) 779, 781
AgsI TTSAA 5 cut(s) 127, 320, 676, 709, 949
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 1 cut(s) 813
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 5 cut(s) 283, 397, 416, 541, 880
AluI AGCT 5 cut(s) 283, 397, 416, 541, 880
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 2 cut(s) 310, 390
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 2 cut(s) 604, 625
Ama87I CYCGRG 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 7 cut(s) 171, 489, 522, 663, 699, 748, 1013
ApaLI GTGCAC 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 5 cut(s) 82, 289, 445, 663, 1013
AsuHPI GGTGA 4 cut(s) 340, 353, 586, 1000
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 3 cut(s) 82, 289, 445
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 1 cut(s) 501
BauI CACGAG 1 cut(s) 542
BbrPI CACGTG 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 561
BccI CCATC 2 cut(s) 622, 902
BceAI ACGGC 3 cut(s) 158, 548, 728
BcgI CGANNNNNNTGC 4 cut(s) 419, 453, 879, 913
BciT130I CCWGG 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 310, 390
BfoI RGCGCY 1 cut(s) 436
BglII AGATCT 1 cut(s) 484
BisI GCNGC 4 cut(s) 121, 237, 517, 857
BlsI GCNGC 4 cut(s) 122, 238, 518, 858
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 3 cut(s) 82, 289, 445
BmeT110I CYCGRG 1 cut(s) 526
BmgBI CACGTC 1 cut(s) 772
BmgT120I GGNCC 5 cut(s) 82, 289, 445, 663, 1013
BmiI GGNNCC 3 cut(s) 500, 971, 1014
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 782
BsaJI CCNNGG 6 cut(s) 168, 189, 448, 492, 564, 613
BsaWI WCCGGW 1 cut(s) 388
BsaXI ACNNNNNCTCC 6 cut(s) 121, 151, 585, 615, 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 757, 979
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 898
Bse3DI GCAATG 1 cut(s) 469
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 6 cut(s) 168, 189, 448, 492, 564, 613
BseGI GGATG 1 cut(s) 913
BseLI CCNNNNNNNGG 3 cut(s) 190, 757, 979
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 209, 615
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 7 cut(s) 773, 848, 851, 854, 857, 860, 1020
BseSI GKGCMC 1 cut(s) 561
BseX3I CGGCCG 1 cut(s) 699
Bsh1236I CGCG 2 cut(s) 48, 516
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 7 cut(s) 173, 491, 524, 665, 701, 750, 1015
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 3 cut(s) 389, 591, 647
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 3 cut(s) 190, 757, 979
BsmAI GTCTC 2 cut(s) 310, 390
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 7 cut(s) 173, 491, 524, 665, 701, 750, 1015
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 2 cut(s) 501, 561
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 4 cut(s) 147, 484, 609, 617
BspACI CCGC 9 cut(s) 121, 236, 467, 502, 516, 650, 827, 856, 919
BspANI GGCC 7 cut(s) 173, 491, 524, 665, 701, 750, 1015
BspCNI CTCAG 2 cut(s) 208, 616
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 2 cut(s) 48, 516
BspLI GGNNCC 3 cut(s) 500, 971, 1014
BspPI GGATC 2 cut(s) 604, 625
BsrBI CCGCTC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 1 cut(s) 898
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 6 cut(s) 168, 189, 448, 492, 564, 613
BssMI GATC 4 cut(s) 147, 484, 609, 617
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 2 cut(s) 168, 189
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 3 cut(s) 144, 556, 580
BstAPI GCANNNNNTGC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 5 cut(s) 255, 332, 409, 561, 648
BstDEI CTNAG 3 cut(s) 54, 195, 624
BstDSI CCRYGG 3 cut(s) 492, 564, 613
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 913
BstFNI CGCG 2 cut(s) 48, 516
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 4 cut(s) 150, 487, 612, 620
BstMAI GTCTC 2 cut(s) 310, 390
BstMBI GATC 4 cut(s) 147, 484, 609, 617
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 3 cut(s) 336, 413, 824
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 2 cut(s) 48, 516
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 2 cut(s) 484, 617
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 2 cut(s) 484, 617
BstZI CGGCCG 1 cut(s) 699
BsuRI GGCC 7 cut(s) 173, 491, 524, 665, 701, 750, 1015
BtgI CCRYGG 3 cut(s) 492, 564, 613
BtgZI GCGATG 1 cut(s) 571
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 1 cut(s) 913
Cac8I GCNNGC 5 cut(s) 255, 332, 409, 561, 648
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 5 cut(s) 82, 289, 445, 663, 1013
CseI GACGC 4 cut(s) 116, 265, 323, 536
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 660, 976
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 54, 195, 624
DpnI GATC 4 cut(s) 149, 486, 611, 619
DpnII GATC 4 cut(s) 147, 484, 609, 617
DraIII CACNNNGTG 1 cut(s) 565
DrdI GACNNNNNNGTC 2 cut(s) 142, 275
DseDI GACNNNNNNGTC 2 cut(s) 142, 275
EaeI YGGCCR 2 cut(s) 489, 699
EagI CGGCCG 1 cut(s) 699
EciI GGCGGA 1 cut(s) 665
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 168, 189
Eco147I AGGCCT 2 cut(s) 524, 750
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 82, 289, 445
Eco47III AGCGCT 1 cut(s) 434
Eco52I CGGCCG 1 cut(s) 699
Eco72I CACGTG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 168, 189
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 168, 189
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 2 cut(s) 663, 979
FaiI YATR 3 cut(s) 661, 977, 1025
FaqI GGGAC 1 cut(s) 790
FatI CATG 2 cut(s) 659, 975
Fnu4HI GCNGC 4 cut(s) 121, 237, 517, 857
FokI GGATG 1 cut(s) 920
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 4 cut(s) 121, 237, 517, 857
GlaI GCGC 1 cut(s) 434
GluI GCNGC 4 cut(s) 121, 237, 517, 857
GsuI CTGGAG 1 cut(s) 1001
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 7 cut(s) 173, 491, 524, 665, 701, 750, 1015
HapII CCGG 3 cut(s) 389, 591, 647
HgaI GACGC 4 cut(s) 116, 265, 323, 536
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 663, 979
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 6 cut(s) 136, 248, 379, 668, 686, 717
HpaII CCGG 3 cut(s) 389, 591, 647
HphI GGTGA 4 cut(s) 340, 353, 586, 1000
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 8 cut(s) 202, 424, 445, 452, 482, 641, 691, 907
Hpy188III TCNNGA 4 cut(s) 242, 389, 535, 623
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 7 cut(s) 148, 179, 339, 377, 405, 552, 610
HpyAV CCTTC 5 cut(s) 109, 350, 361, 374, 979
HpyCH4III ACNGT 3 cut(s) 144, 556, 580
HpyCH4IV ACGT 3 cut(s) 507, 771, 781
HpyCH4V TGCA 2 cut(s) 297, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 413, 824
HpyF3I CTNAG 3 cut(s) 54, 195, 624
HpySE526I ACGT 3 cut(s) 507, 771, 781
Hsp92II CATG 2 cut(s) 663, 979
HspAI GCGC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 388
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
Kzo9I GATC 4 cut(s) 147, 484, 609, 617
LmnI GCTCC 5 cut(s) 101, 402, 459, 504, 916
MaeII ACGT 3 cut(s) 507, 771, 781
MaeIII GTNAC 2 cut(s) 574, 962
MalI GATC 4 cut(s) 149, 486, 611, 619
MbiI CCGCTC 1 cut(s) 919
MboI GATC 4 cut(s) 147, 484, 609, 617
MboII GAAGA 5 cut(s) 21, 335, 350, 779, 862
MflI RGATCY 2 cut(s) 484, 617
MhlI GDGCHC 2 cut(s) 501, 561
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 2 cut(s) 130, 677
MmeI TCCRAC 6 cut(s) 45, 447, 619, 663, 744, 894
Mox20I TGGCCA 1 cut(s) 491
MroI TCCGGA 1 cut(s) 388
MroNI GCCGGC 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 491
MspI CCGG 3 cut(s) 389, 591, 647
MspR9I CCNGG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 815
MvnI CGCG 2 cut(s) 48, 516
MwoI GCNNNNNNNGC 3 cut(s) 336, 413, 824
NaeI GCCGGC 1 cut(s) 648
NdeII GATC 4 cut(s) 147, 484, 609, 617
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 2 cut(s) 663, 979
NlaIV GGNNCC 3 cut(s) 500, 971, 1014
NmeAIII GCCGAG 3 cut(s) 348, 691, 727
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 1 cut(s) 979
PaeR7I CTCGAG 1 cut(s) 526
PceI AGGCCT 2 cut(s) 524, 750
PcsI WCGNNNNNNNCGW 2 cut(s) 540, 594
PdiI GCCGGC 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 248, 379, 686, 717
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 979
PkrI GCNGC 4 cut(s) 122, 238, 518, 858
PleI GAGTC 2 cut(s) 130, 676
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 2 cut(s) 130, 676
Ppu21I YACGTR 1 cut(s) 782
Psp6I CCWGG 1 cut(s) 813
PspCI CACGTG 1 cut(s) 782
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 3 cut(s) 500, 971, 1014
PspPI GGNCC 5 cut(s) 82, 289, 445, 663, 1013
PspXI VCTCGAGB 1 cut(s) 526
PsuI RGATCY 2 cut(s) 484, 617
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 4 cut(s) 121, 237, 517, 857
Sau3AI GATC 4 cut(s) 147, 484, 609, 617
Sau96I GGNCC 5 cut(s) 82, 289, 445, 663, 1013
SchI GAGTC 2 cut(s) 130, 677
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 501, 561
Sfr274I CTCGAG 1 cut(s) 526
SinI GGWCC 3 cut(s) 82, 289, 445
SlaI CTCGAG 1 cut(s) 526
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 2 cut(s) 524, 750
SsiI CCGC 9 cut(s) 121, 236, 467, 502, 516, 650, 827, 856, 919
StuI AGGCCT 2 cut(s) 524, 750
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 2 cut(s) 168, 189
TaaI ACNGT 3 cut(s) 144, 556, 580
TaiI ACGT 3 cut(s) 510, 774, 784
TaqI TCGA 8 cut(s) 102, 146, 177, 243, 403, 429, 527, 550
TasI AATT 1 cut(s) 76
TauI GCSGC 4 cut(s) 123, 239, 519, 859
TfiI GAWTC 4 cut(s) 248, 379, 686, 717
TseFI GTSAC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 2 cut(s) 574, 648
TspGWI ACGGA 5 cut(s) 26, 292, 389, 472, 630
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 979
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 82, 289, 445
XagI CCTNNNNNAGG 1 cut(s) 755
XceI RCATGY 1 cut(s) 979
XhoI CTCGAG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.