Rorug04G0371000

UPF0496 protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014732
Physical Location & Seq
Reverse (-)
54234993 .. 54235373
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0371000.1

Sequence Viewer

Length: 381 bp
ATGCTGGGAGGTGGTGCTTGTCGGTTGCATGGTTTGATATCCCCAGAACACGCTGAAATCTTGGCCTGCAAGGTGGCTTTGGAGTTTGCGGTGGAGCATGGTTTTGGGCCAGTTATGCTGGAGACTGATGCAATGGAAGTTCAGAGTCAACTCTCAGCTCATGATTCTGTTAACACATCATTGCTTGGAAGAATATATGAAGATGTTAGGTTGCTGTTGGAGGCTCAGAATGTCTTACATGTGAGTCACATAGGTAGGAAAGGAAATATGGTGGCCCATTTGCTAGCTAGCCATGCTTGTTCTCTCACAGAGAATGAATTTTATTTTTCAGTCCCAGGTGTTTTACAAGCTGCAATTGCAGCTGATATTTGTACTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

126

Amino Acids

13.49

Weight (kDa)

5.31

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 99 4.7e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36680
malus_domestica MD13G1008300.v1.1
prunus_persica Prupe.1G344800_v2.0.a1
pyrus_communis pycom13g00680
rosa_chinensis RchiOBHm_Chr4g0446391
rosa_laevigata RLG00000005666
rosa_multiflora Rmu_sc0008360.1_g000003 Rmu_sc0010778.1_g000005 Rmu_sc0025512.1_g000002 Rmu_sc0025513.1_g000001
rosa_roxburghii Rroxscaffold_5G00386830
rosa_rugosa Rorug04G0371000
rosa_samantha Rh4AG432500 Rh4BG441700 Rh4CG459000 Rh4DG440400
rosa_wichuraiana Rw4G036940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 317
AfaI GTAC 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 238
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 4 cut(s) 158, 287, 350, 362
AluI AGCT 4 cut(s) 158, 287, 350, 362
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 3 cut(s) 63, 107, 273
ApeKI GCWGC 2 cut(s) 350, 359
ApoI RAATTY 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 107, 274
AsuNHI GCTAGC 2 cut(s) 283, 287
BbvI GCAGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 284, 288
BisI GCNGC 2 cut(s) 351, 360
BlsI GCNGC 2 cut(s) 352, 361
Bme1390I CCNGG 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 107, 274
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 118
BmtI GCTAGC 2 cut(s) 287, 291
BpmI CTGGAG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 138, 179
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 138, 179
BseMII CTCAG 2 cut(s) 168, 239
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 2 cut(s) 337, 371
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 3 cut(s) 65, 109, 275
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 3 cut(s) 65, 109, 275
BspACI CCGC 1 cut(s) 89
BspANI GGCC 3 cut(s) 65, 109, 275
BspCNI CTCAG 2 cut(s) 167, 238
BspHI TCATGA 1 cut(s) 160
BspOI GCTAGC 2 cut(s) 287, 291
BsrDI GCAATG 2 cut(s) 138, 179
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 67, 285, 289
BstDEI CTNAG 2 cut(s) 154, 225
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 4 cut(s) 115, 293, 356, 359
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 337, 371
BsuRI GGCC 3 cut(s) 65, 109, 275
Cac8I GCNNGC 3 cut(s) 67, 285, 289
CciI TCATGA 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 107, 274
Csp6I GTAC 1 cut(s) 372
CviAII CATG 5 cut(s) 29, 98, 161, 239, 293
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 2 cut(s) 154, 225
Eco32I GATATC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 39
FaeI CATG 5 cut(s) 32, 101, 164, 242, 296
FaqI GGGAC 1 cut(s) 317
FatI CATG 5 cut(s) 28, 97, 160, 238, 292
Fnu4HI GCNGC 2 cut(s) 351, 360
Fsp4HI GCNGC 2 cut(s) 351, 360
FspBI CTAG 2 cut(s) 284, 288
GluI GCNGC 2 cut(s) 351, 360
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 3 cut(s) 65, 109, 275
Hin1II CATG 5 cut(s) 32, 101, 164, 242, 296
HincII GTYRAC 2 cut(s) 149, 172
HindII GTYRAC 2 cut(s) 149, 172
HinfI GANTC 3 cut(s) 145, 164, 244
HpaI GTTAAC 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 149, 172
Hpy188I TCNGA 2 cut(s) 144, 228
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 149, 172
HpyCH4V TGCA 5 cut(s) 28, 69, 131, 353, 359
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 293, 356, 359
HpyF3I CTNAG 2 cut(s) 154, 225
Hsp92II CATG 5 cut(s) 32, 101, 164, 242, 296
KspAI GTTAAC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 57, 79, 104, 123, 321, 348
Lsp1109I GCAGC 2 cut(s) 337, 371
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 284, 288
MaeIII GTNAC 1 cut(s) 245
MboII GAAGA 2 cut(s) 201, 212
MfeI CAATTG 1 cut(s) 354
MluCI AATT 2 cut(s) 317, 354
MlyI GAGTC 2 cut(s) 154, 253
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 1 cut(s) 214
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 115, 293, 356, 359
NheI GCTAGC 2 cut(s) 283, 287
NlaIII CATG 5 cut(s) 32, 101, 164, 242, 296
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 242
PagI TCATGA 1 cut(s) 160
PciI ACATGT 1 cut(s) 238
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 352, 361
PleI GAGTC 2 cut(s) 153, 252
PpsI GAGTC 2 cut(s) 153, 252
PscI ACATGT 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 2 cut(s) 107, 274
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 351, 360
Sau96I GGNCC 2 cut(s) 107, 274
SchI GAGTC 2 cut(s) 154, 253
ScrFI CCNGG 1 cut(s) 336
SetI ASST 9 cut(s) 13, 75, 160, 212, 256, 289, 340, 352, 364
SfaNI GCATC 1 cut(s) 118
Sse9I AATT 2 cut(s) 317, 354
SsiI CCGC 1 cut(s) 89
SspMI CTAG 2 cut(s) 284, 288
StyD4I CCNGG 1 cut(s) 334
TasI AATT 2 cut(s) 317, 354
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 350, 359
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 213, 330
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 284, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.