Rh4CG459000

UPF0496 protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014732
Physical Location & Seq
Reverse (-)
69015049 .. 69017288
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG459000.1

Sequence Viewer

Length: 960 bp
ATGTTCCTAACGGAGATCAAGAAACACGCCGTTCCGTCCTTCACGCCGTTTAAGAAACATTCCGTTCCGAACAAATTTGGCCTCCTCACTAACGCCTTCGACGACGCTCTGCTCCGCCGTTTGAAGACGCTTTCTCCGCCGTCGATCAGCTTGTCCTGGCTATCCAAGGCCGTCGATTTTCTCGCCTTTTCGCACTCCGAGGCCAGAAGCTTAATCTCCAATCTCGAGGTAACGGCTTTGGCCGATGATTCTCTTGCGACTTATTTGGACGACAGTGTGAAGCTTTTGGATATATGCAACTCCGTCTCCGCCGAGATCGAGCGGCTCCGGCAGCGCCGGATTGTTCTCGCTTTCGCCGTTCACCTCCTCGGCGACGGGAAGCTCCGGCGAGCTCGGGAGATTTTAACTGAATGGGAGGGCCGCCGCGCCTCGGGATTCGGGAAAGCGAACAATGCGGAGGTGCTGGTCAGGGATCTGGCGCTGGGGCTCCTCCGCAGCGCGCCACGTGGAAAGATCTCGAGCGTTGGGAGAGTCGTGAGGCGGACGATGTACGCCGTCCGATTGGTGACGGTGTTCGTCGCCGGAGCAGTGGTGTCGGCGATGAACGGATCGGCGGAGACTGTGACTGTCCGGGCGCCGGCGGAGTTTTCTTGGGCCGAGTCGTTGAACGAGCTGGAATCGGCGGTCTCCGGCGAGTTGAAACGGCGATTCGGGAAGGAGGCAAAAAGGAAAGGGACCCTATTGGAGGAGGTAGATGACGTGGCTACACGCGTCGCGGAAGCGTGTGAGATAGCGGAGGAAGACACGGAGAGGAGAAACGACGTCGTAAAAGAGGTGGAGAGGGCAATGGGGTCGTTTTCGGATGGGTTGGAAGGGTTGAGTAAAAGGGTGAATGAAATGTTCCATGGTGTTTTGAGTAACAGGAACTACATGTTGGACCATGTTAGGGTCAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

319

Amino Acids

35.34

Weight (kDa)

9.2

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 37 - 137 3.6e-11 Protein ROH1-like
ROH1-like PF05633 167 - 314 1.6e-10 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36680
malus_domestica MD13G1008300.v1.1
prunus_persica Prupe.1G344800_v2.0.a1
pyrus_communis pycom13g00680
rosa_chinensis RchiOBHm_Chr4g0446391
rosa_laevigata RLG00000005666
rosa_multiflora Rmu_sc0008360.1_g000003 Rmu_sc0010778.1_g000005 Rmu_sc0025512.1_g000002 Rmu_sc0025513.1_g000001
rosa_roxburghii Rroxscaffold_5G00386830
rosa_rugosa Rorug04G0371000
rosa_samantha Rh4AG432500 Rh4BG441700 Rh4CG459000 Rh4DG440400
rosa_wichuraiana Rw4G036940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 825
AccB1I GGYRCC 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 4 cut(s) 426, 500, 771, 776
AclWI GGATC 2 cut(s) 480, 616
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 74
AcvI CACGTG 1 cut(s) 506
AcyI GRCGYC 2 cut(s) 635, 822
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 4 cut(s) 430, 637, 745, 946
AflIII ACRYGT 2 cut(s) 769, 930
AgsI TTSAA 3 cut(s) 124, 667, 700
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AluBI AGCT 7 cut(s) 150, 210, 283, 382, 392, 673, 956
AluI AGCT 7 cut(s) 150, 210, 283, 382, 392, 673, 956
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 3 cut(s) 310, 611, 691
AlwI GGATC 2 cut(s) 480, 616
Ama87I CYCGRG 4 cut(s) 224, 393, 430, 517
AoxI GGCC 6 cut(s) 79, 168, 201, 240, 418, 654
ApeKI GCWGC 2 cut(s) 331, 495
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 6 cut(s) 336, 428, 481, 500, 502, 637
AspS9I GGNCC 4 cut(s) 418, 654, 735, 937
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 3 cut(s) 353, 577, 901
AvaI CYCGRG 4 cut(s) 224, 393, 430, 517
AvaII GGWCC 2 cut(s) 735, 937
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 2 cut(s) 394, 489
BbrPI CACGTG 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 131, 807
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 343, 507
BccI CCATC 1 cut(s) 857
BceAI ACGGC 9 cut(s) 14, 31, 102, 124, 155, 249, 341, 539, 719
BcgI CGANNNNNNTGC 4 cut(s) 576, 610, 834, 868
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 3 cut(s) 310, 611, 691
BfoI RGCGCY 3 cut(s) 337, 482, 638
BglII AGATCT 1 cut(s) 513
BisI GCNGC 5 cut(s) 323, 332, 421, 424, 496
BlsI GCNGC 5 cut(s) 324, 333, 422, 425, 497
Bme1390I CCNGG 2 cut(s) 157, 632
Bme18I GGWCC 2 cut(s) 735, 937
BmeT110I CYCGRG 4 cut(s) 224, 393, 430, 517
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 4 cut(s) 418, 654, 735, 937
BmiI GGNNCC 5 cut(s) 326, 488, 636, 736, 737
BmrFI CCNGG 2 cut(s) 157, 632
BpiI GAAGAC 2 cut(s) 131, 807
BpuMI CCSGG 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 506
BsaHI GRCGYC 2 cut(s) 635, 822
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 5 cut(s) 165, 198, 367, 429, 904
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 290, 320, 576, 606
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 637, 745, 946
Bse118I RCCGGY 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 5 cut(s) 165, 198, 367, 429, 904
BseGI GGATG 1 cut(s) 868
BseLI CCNNNNNNNGG 4 cut(s) 430, 637, 745, 946
BseMI GCAATG 1 cut(s) 852
BsePI GCGCGC 1 cut(s) 498
BseRI GAGGAG 5 cut(s) 74, 356, 479, 761, 826
BseXI GCAGC 2 cut(s) 343, 507
BseYI CCCAGC 1 cut(s) 481
Bsh1236I CGCG 4 cut(s) 426, 500, 771, 776
BshFI GGCC 6 cut(s) 81, 170, 203, 242, 420, 656
BshNI GGYRCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 4 cut(s) 224, 393, 430, 517
BsiSI CCGG 7 cut(s) 328, 337, 385, 582, 631, 638, 690
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 4 cut(s) 430, 637, 745, 946
BsmAI GTCTC 3 cut(s) 310, 611, 691
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 748
BsnI GGCC 6 cut(s) 81, 170, 203, 242, 420, 656
Bso31I GGTCTC 1 cut(s) 691
BsoBI CYCGRG 4 cut(s) 224, 393, 430, 517
Bsp1286I GDGCHC 2 cut(s) 394, 489
Bsp143I GATC 6 cut(s) 15, 144, 315, 472, 513, 608
Bsp19I CCATGG 1 cut(s) 904
BspANI GGCC 6 cut(s) 81, 170, 203, 242, 420, 656
BspFNI CGCG 4 cut(s) 426, 500, 771, 776
BspLI GGNNCC 5 cut(s) 326, 488, 636, 736, 737
BspPI GGATC 2 cut(s) 480, 616
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 691
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 1 cut(s) 637
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 5 cut(s) 165, 198, 367, 429, 904
BssHII GCGCGC 1 cut(s) 498
BssMI GATC 6 cut(s) 15, 144, 315, 472, 513, 608
BssNI GRCGYC 2 cut(s) 635, 822
BssT1I CCWWGG 2 cut(s) 165, 904
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 4 cut(s) 275, 571, 622, 628
BstACI GRCGYC 2 cut(s) 635, 822
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 390, 500, 639
BstDEI CTNAG 1 cut(s) 957
BstDSI CCRYGG 1 cut(s) 904
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 868
BstFNI CGCG 4 cut(s) 426, 500, 771, 776
BstH2I RGCGCY 3 cut(s) 337, 482, 638
BstHHI GCGC 6 cut(s) 336, 428, 481, 500, 502, 637
BstKTI GATC 6 cut(s) 18, 147, 318, 475, 516, 611
BstMAI GTCTC 3 cut(s) 310, 611, 691
BstMBI GATC 6 cut(s) 15, 144, 315, 472, 513, 608
BstMWI GCNNNNNNNGC 4 cut(s) 136, 328, 331, 452
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 934
BstSCI CCNGG 2 cut(s) 155, 630
BstUI CGCG 4 cut(s) 426, 500, 771, 776
BstV1I GCAGC 2 cut(s) 343, 507
BstV2I GAAGAC 2 cut(s) 131, 807
BstX2I RGATCY 2 cut(s) 472, 513
BstYI RGATCY 2 cut(s) 472, 513
BsuRI GGCC 6 cut(s) 81, 170, 203, 242, 420, 656
BtgI CCRYGG 1 cut(s) 904
BtgZI GCGATG 1 cut(s) 614
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 1 cut(s) 868
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 280, 594
Cac8I GCNNGC 3 cut(s) 390, 500, 639
CfoI GCGC 6 cut(s) 336, 428, 481, 500, 502, 637
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 4 cut(s) 418, 654, 735, 937
CseI GACGC 3 cut(s) 113, 136, 760
Csp6I GTAC 1 cut(s) 550
CviAII CATG 3 cut(s) 905, 931, 941
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 957
DinI GGCGCC 1 cut(s) 636
DpnI GATC 6 cut(s) 17, 146, 317, 474, 515, 610
DpnII GATC 6 cut(s) 15, 144, 315, 472, 513, 608
EaeI YGGCCR 1 cut(s) 240
EciI GGCGGA 6 cut(s) 104, 126, 298, 556, 629, 656
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 165, 904
Eco24I GRGCYC 2 cut(s) 394, 489
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 735, 937
Eco53kI GAGCTC 1 cut(s) 392
Eco72I CACGTG 1 cut(s) 506
Eco88I CYCGRG 4 cut(s) 224, 393, 430, 517
EcoICRI GAGCTC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 165, 904
EcoT38I GRGCYC 2 cut(s) 394, 489
EgeI GGCGCC 1 cut(s) 636
EheI GGCGCC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 165, 904
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 3 cut(s) 908, 934, 944
FaiI YATR 5 cut(s) 293, 295, 906, 932, 942
FaqI GGGAC 1 cut(s) 748
FatI CATG 3 cut(s) 904, 930, 940
Fnu4HI GCNGC 5 cut(s) 323, 332, 421, 424, 496
FokI GGATG 1 cut(s) 875
FriOI GRGCYC 2 cut(s) 394, 489
Fsp4HI GCNGC 5 cut(s) 323, 332, 421, 424, 496
GlaI GCGC 6 cut(s) 335, 427, 480, 499, 501, 636
GluI GCNGC 5 cut(s) 323, 332, 421, 424, 496
GsaI CCCAGC 1 cut(s) 485
HaeII RGCGCY 3 cut(s) 337, 482, 638
HaeIII GGCC 6 cut(s) 81, 170, 203, 242, 420, 656
HapII CCGG 7 cut(s) 328, 337, 385, 582, 631, 638, 690
HgaI GACGC 3 cut(s) 113, 136, 760
HhaI GCGC 6 cut(s) 336, 428, 481, 500, 502, 637
Hin1I GRCGYC 2 cut(s) 635, 822
Hin1II CATG 3 cut(s) 908, 934, 944
Hin6I GCGC 6 cut(s) 334, 426, 479, 498, 500, 635
HinP1I GCGC 6 cut(s) 334, 426, 479, 498, 500, 635
HindIII AAGCTT 2 cut(s) 208, 281
HinfI GANTC 6 cut(s) 248, 435, 531, 659, 677, 708
HpaII CCGG 7 cut(s) 328, 337, 385, 582, 631, 638, 690
HphI GGTGA 3 cut(s) 353, 577, 901
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 69, 199, 560, 862, 953
Hpy188III TCNNGA 8 cut(s) 19, 224, 395, 432, 439, 517, 535, 712
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 9 cut(s) 104, 107, 145, 176, 377, 581, 776, 824, 827
HpyAV CCTTC 4 cut(s) 49, 106, 709, 866
HpyCH4III ACNGT 4 cut(s) 275, 571, 622, 628
HpyCH4IV ACGT 3 cut(s) 505, 759, 822
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 328, 331, 452
HpyF3I CTNAG 1 cut(s) 957
HpySE526I ACGT 3 cut(s) 505, 759, 822
Hsp92I GRCGYC 2 cut(s) 635, 822
Hsp92II CATG 3 cut(s) 908, 934, 944
HspAI GCGC 6 cut(s) 334, 426, 479, 498, 500, 635
KasI GGCGCC 1 cut(s) 634
KflI GGGWCCC 1 cut(s) 735
KroI GCCGGC 1 cut(s) 637
KroNI GCCGGC 1 cut(s) 639
Kzo9I GATC 6 cut(s) 15, 144, 315, 472, 513, 608
LmnI GCTCC 5 cut(s) 117, 330, 387, 492, 584
Lsp1109I GCAGC 2 cut(s) 343, 507
MaeII ACGT 3 cut(s) 505, 759, 822
MaeIII GTNAC 4 cut(s) 229, 565, 622, 917
MalI GATC 6 cut(s) 17, 146, 317, 474, 515, 610
MbiI CCGCTC 1 cut(s) 322
MboI GATC 6 cut(s) 15, 144, 315, 472, 513, 608
MboII GAAGA 2 cut(s) 136, 812
MflI RGATCY 2 cut(s) 472, 513
MhlI GDGCHC 2 cut(s) 394, 489
MluCI AATT 1 cut(s) 74
MluI ACGCGT 1 cut(s) 769
Mly113I GGCGCC 1 cut(s) 635
MlyI GAGTC 2 cut(s) 540, 668
MmeI TCCRAC 2 cut(s) 849, 915
MreI CGCCGGCG 1 cut(s) 637
MroNI GCCGGC 1 cut(s) 637
MseI TTAA 3 cut(s) 51, 212, 404
MspI CCGG 7 cut(s) 328, 337, 385, 582, 631, 638, 690
MspR9I CCNGG 2 cut(s) 157, 632
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 4 cut(s) 426, 500, 771, 776
MwoI GCNNNNNNNGC 4 cut(s) 136, 328, 331, 452
NaeI GCCGGC 1 cut(s) 639
NarI GGCGCC 1 cut(s) 635
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 1 cut(s) 904
NdeII GATC 6 cut(s) 15, 144, 315, 472, 513, 608
NgoMIV GCCGGC 1 cut(s) 637
NlaIII CATG 3 cut(s) 908, 934, 944
NlaIV GGNNCC 5 cut(s) 326, 488, 636, 736, 737
NmeAIII GCCGAG 3 cut(s) 337, 348, 682
NmuCI GTSAC 2 cut(s) 565, 622
NspI RCATGY 1 cut(s) 934
PaeR7I CTCGAG 2 cut(s) 224, 517
PauI GCGCGC 1 cut(s) 498
PciI ACATGT 1 cut(s) 930
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 354
PdiI GCCGGC 1 cut(s) 639
PfeI GAWTC 4 cut(s) 248, 435, 677, 708
PkrI GCNGC 5 cut(s) 324, 333, 422, 425, 497
PleI GAGTC 2 cut(s) 539, 667
PluTI GGCGCC 1 cut(s) 638
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 2 cut(s) 539, 667
Ppu21I YACGTR 1 cut(s) 506
PpuMI RGGWCCY 1 cut(s) 735
PscI ACATGT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 155
PspCI CACGTG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 5 cut(s) 326, 488, 636, 736, 737
PspPI GGNCC 4 cut(s) 418, 654, 735, 937
PspPPI RGGWCCY 1 cut(s) 735
PsuI RGATCY 2 cut(s) 472, 513
PteI GCGCGC 1 cut(s) 498
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 51, 212, 404
SatI GCNGC 5 cut(s) 323, 332, 421, 424, 496
Sau3AI GATC 6 cut(s) 15, 144, 315, 472, 513, 608
Sau96I GGNCC 4 cut(s) 418, 654, 735, 937
SchI GAGTC 2 cut(s) 540, 668
ScrFI CCNGG 2 cut(s) 157, 632
SduI GDGCHC 2 cut(s) 394, 489
SfoI GGCGCC 1 cut(s) 636
Sfr274I CTCGAG 2 cut(s) 224, 517
SgrAI CRCCGGYG 1 cut(s) 637
SinI GGWCC 2 cut(s) 735, 937
SlaI CTCGAG 2 cut(s) 224, 517
SmlI CTYRAG 2 cut(s) 224, 517
SmoI CTYRAG 2 cut(s) 224, 517
Sse9I AATT 1 cut(s) 74
SspDI GGCGCC 1 cut(s) 634
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 155, 630
StyI CCWWGG 2 cut(s) 165, 904
TaaI ACNGT 4 cut(s) 275, 571, 622, 628
TaiI ACGT 3 cut(s) 508, 762, 825
TaqI TCGA 6 cut(s) 99, 143, 174, 225, 318, 518
TasI AATT 1 cut(s) 74
TauI GCSGC 3 cut(s) 325, 423, 426
TfiI GAWTC 4 cut(s) 248, 435, 677, 708
Tru1I TTAA 3 cut(s) 51, 212, 404
Tru9I TTAA 3 cut(s) 51, 212, 404
TscAI CASTG 2 cut(s) 280, 594
TseFI GTSAC 2 cut(s) 565, 622
TseI GCWGC 2 cut(s) 331, 495
Tsp45I GTSAC 2 cut(s) 565, 622
TspDTI ATGAA 2 cut(s) 617, 909
TspGWI ACGGA 6 cut(s) 24, 26, 52, 292, 621, 821
TspRI CASTG 2 cut(s) 280, 594
VpaK11BI GGWCC 2 cut(s) 735, 937
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 934
XhoI CTCGAG 2 cut(s) 224, 517
ZraI GACGTC 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.