Rmu_sc0010778.1_g000005

Domain of unknown function (DUF3067)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010778.1
OG0014732
Physical Location & Seq
Reverse (-)
19081 .. 20726
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010778.1_g000005.1.cds

Sequence Viewer

Length: 636 bp
atgtataaaacctccgccaccactcctcttctccactcgccgacgtttcgaaacgattttcccggaaaaagttcgtcctttttccacctgaaaacactcctaaccgattctccggccgtcgccaagatgttcctaacggagatcaagaaacacgccgttccgtccttcacgccgtttaagaaacattccgttccgaacaaatttggcctcatcactaacgccttcgacgacgctctgctccgccgtttgaagacgctttctcagccgtcgatcagcttgtcctggctatccaaggccgtcgattttctcgccttttcgcactccgaggccagaagcttaatctccaatctcgagtgctggggagctgtgtcacatatcagaaacagcctagcaacggtgaaagagaggcctcggataggaaaggctgttagcatttttatagatatggacgagtctggaggccgtgcaaatgaatggatttacaaggcacttggcagcatagagttgaagtatgagggacatatcagctgtagacctagttgtggtggagatgatacaaagcgcgccgagtttcttcactttcttgtgttggcagtggtggagtgtggaaggtggtgtcgaaccaacaagctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3067

Protein Analysis

211

Amino Acids

23.6

Weight (kDa)

9.53

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36680
malus_domestica MD13G1008300.v1.1
prunus_persica Prupe.1G344800_v2.0.a1
pyrus_communis pycom13g00680
rosa_chinensis RchiOBHm_Chr4g0446391
rosa_laevigata RLG00000005666
rosa_multiflora Rmu_sc0008360.1_g000003 Rmu_sc0010778.1_g000005 Rmu_sc0025512.1_g000002 Rmu_sc0025513.1_g000001
rosa_roxburghii Rroxscaffold_5G00386830
rosa_rugosa Rorug04G0371000
rosa_samantha Rh4AG432500 Rh4BG441700 Rh4CG459000 Rh4DG440400
rosa_wichuraiana Rw4G036940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 532
AccII CGCG 1 cut(s) 564
AciI CCGC 2 cut(s) 15, 241
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 394, 416, 542
AgsI TTSAA 2 cut(s) 250, 508
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 276, 336, 365, 528, 631
AluI AGCT 5 cut(s) 276, 336, 365, 528, 631
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 6 cut(s) 114, 205, 294, 327, 407, 460
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 564, 566
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 409
AsuII TTCGAA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 507
BceAI ACGGC 7 cut(s) 101, 140, 157, 228, 250, 281, 447
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 2 cut(s) 389, 537
BfmI CTRYAG 1 cut(s) 529
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme1390I CCNGG 2 cut(s) 63, 283
BmeT110I CYCGRG 1 cut(s) 350
BmrFI CCNGG 2 cut(s) 63, 283
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 291, 324, 410
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 416, 542
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 3 cut(s) 291, 324, 410
BseLI CCNNNNNNNGG 3 cut(s) 394, 416, 542
BseMII CTCAG 1 cut(s) 275
BsePI GCGCGC 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 15
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 6 cut(s) 116, 207, 296, 329, 409, 462
BsiEI CGRYCG 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 63, 113
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 394, 416, 542
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 6 cut(s) 116, 207, 296, 329, 409, 462
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 49
Bsp143I GATC 2 cut(s) 141, 270
BspACI CCGC 2 cut(s) 15, 241
BspANI GGCC 6 cut(s) 116, 207, 296, 329, 409, 462
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 291, 324, 410
BssHII GCGCGC 1 cut(s) 562
BssMI GATC 2 cut(s) 141, 270
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 2 cut(s) 564, 566
BstKTI GATC 2 cut(s) 144, 273
BstMBI GATC 2 cut(s) 141, 270
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 61, 281
BstSFI CTRYAG 1 cut(s) 529
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 257
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 6 cut(s) 116, 207, 296, 329, 409, 462
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 564
CfoI GCGC 2 cut(s) 564, 566
CseI GACGC 2 cut(s) 239, 262
DdeI CTNAG 1 cut(s) 261
DpnI GATC 2 cut(s) 143, 272
DpnII GATC 2 cut(s) 141, 270
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 2 cut(s) 4, 230
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaiI YATR 8 cut(s) 6, 375, 440, 446, 500, 513, 522, 634
FaqI GGGAC 1 cut(s) 531
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 2 cut(s) 389, 537
GlaI GCGC 2 cut(s) 563, 565
GluI GCNGC 1 cut(s) 496
GsaI CCCAGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 6 cut(s) 116, 207, 296, 329, 409, 462
HapII CCGG 2 cut(s) 63, 113
HgaI GACGC 2 cut(s) 239, 262
HhaI GCGC 2 cut(s) 564, 566
Hin6I GCGC 2 cut(s) 562, 564
HinP1I GCGC 2 cut(s) 562, 564
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 2 cut(s) 107, 452
HpaII CCGG 2 cut(s) 63, 113
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 4 cut(s) 195, 325, 380, 414
Hpy188III TCNNGA 3 cut(s) 145, 350, 456
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 6 cut(s) 46, 122, 230, 233, 271, 302
HpyAV CCTTC 3 cut(s) 175, 232, 603
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 44
HspAI GCGC 2 cut(s) 562, 564
Kzo9I GATC 2 cut(s) 141, 270
LmnI GCTCC 2 cut(s) 243, 362
LpnPI CCDG 8 cut(s) 76, 101, 126, 268, 295, 343, 343, 441
Lsp1109I GCAGC 1 cut(s) 507
MaeI CTAG 2 cut(s) 389, 537
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 369
MalI GATC 2 cut(s) 143, 272
MboI GATC 2 cut(s) 141, 270
MboII GAAGA 3 cut(s) 20, 262, 566
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 8 cut(s) 22, 36, 218, 319, 399, 420, 452, 508
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 2 cut(s) 177, 338
MspA1I CMGCKG 1 cut(s) 528
MspI CCGG 2 cut(s) 63, 113
MspR9I CCNGG 2 cut(s) 63, 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 63
NdeII GATC 2 cut(s) 141, 270
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 369
NspV TTCGAA 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 350
PauI GCGCGC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 281
PteI GCGCGC 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 528
SaqAI TTAA 2 cut(s) 177, 338
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 2 cut(s) 141, 270
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 63, 283
SfcI CTRYAG 1 cut(s) 529
Sfr274I CTCGAG 1 cut(s) 350
SfuI TTCGAA 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 2 cut(s) 15, 241
SspMI CTAG 2 cut(s) 389, 537
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 61, 281
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 47
TaqI TCGA 6 cut(s) 49, 225, 269, 300, 351, 619
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 177, 338
Tru9I TTAA 2 cut(s) 177, 338
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 486
TspGWI ACGGA 3 cut(s) 150, 152, 178
TspRI CASTG 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 2 cut(s) 389, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.