Rroxscaffold_5G00386830

UPF0496 protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014732
Physical Location & Seq
Reverse (-)
65600871 .. 65601818
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386830.1

Sequence Viewer

Length: 948 bp
ATGTTCCTAACGGAGATCAAGAAACACGCCGTTCCGTCCTTCACGCCGCTTAAGAAACATTCCGTTCCGAACAAATTTGGCCCCATCACTAACGCCTTCGACAACGCTCTGCTCTACCGTTTGAAGACGCTTTCTCCGCCGTCGATCAGCGTGTCCTGGCTATCCAAGGCCGTCGATTTTCTCGCCTTTTCGCACTCCGAGGCCAGAAGCTTAATCTCCAATCTCGAGGTAACGGCTTTGGATGATTCTCTTGCGACTTATTTGGATGACAGTGTGAAGCTTTTGGATATATGCAACTCCGTCTCCGCCGAGATGGAGCGGCTCCGGCAGCGTCGGATTGTTCTCGCTTTCGCCGTTCACCTCCTCGGAGACGGGAAGCTCCGGCGAGCTCGGGAGATTTTAACTGAATGGGAGGGCCGCCGCGCCTCGGGATTCGGGAAAGCGAACAATGCGGAGGTGCTGGTCAGGGATCTGGCGCTGGGGCTCCGCAGCGCGCCACGTGGAAAGATCTCGAGCGTTGGGAGAGTCGTGAGGCGGACGATGTACGCCGTCCGATTGGTGACGGTGTTCGTCGCCGGAGCAGTGGTGTCGGCGATGAACGGATCGGCGGAGACTGTGACTGTCCCGGCGCCGGCGGAGTTTTCTTGGGCCGAGTCGTTGAACGAGCTGGAATCGGCGGTCTCCGGCGAGTTGAAACGGCGATTCGGAAAGGAGGCAAAAGGGAAAGGGACCCTATTGGAGGAGGTAGATGACGTGGCTACACGAGTCGCGGAAGCGTGTGAGATAGAAGACACGGAGAGGAGAAACGACGTCGTAAAAGAGGTGGAGAGGGCATTGGGGTCGTTTTCGGCCGCGTTGGAAGGGTTGAGTAAAAGGGTGAATGAAATGTTCCATGGTGTTTTGAGTAACAGGAACTACGTGTTGGACCATGTTAGGGTCAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

315

Amino Acids

34.68

Weight (kDa)

9.18

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 45 - 136 8.8e-11 Protein ROH1-like
ROH1-like PF05633 165 - 310 8.6e-09 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36680
malus_domestica MD13G1008300.v1.1
prunus_persica Prupe.1G344800_v2.0.a1
pyrus_communis pycom13g00680
rosa_chinensis RchiOBHm_Chr4g0446391
rosa_laevigata RLG00000005666
rosa_multiflora Rmu_sc0008360.1_g000003 Rmu_sc0010778.1_g000005 Rmu_sc0025512.1_g000002 Rmu_sc0025513.1_g000001
rosa_roxburghii Rroxscaffold_5G00386830
rosa_rugosa Rorug04G0371000
rosa_samantha Rh4AG432500 Rh4BG441700 Rh4CG459000 Rh4DG440400
rosa_wichuraiana Rw4G036940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 628
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 4 cut(s) 423, 494, 770, 854
AclWI GGATC 2 cut(s) 477, 610
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 1 cut(s) 74
AcvI CACGTG 1 cut(s) 500
AcyI GRCGYC 2 cut(s) 629, 810
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 427, 631, 739, 934
AflII CTTAAG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 3 cut(s) 124, 661, 694
AjiI CACGTC 1 cut(s) 754
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 6 cut(s) 210, 280, 379, 389, 667, 944
AluI AGCT 6 cut(s) 210, 280, 379, 389, 667, 944
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 4 cut(s) 307, 363, 605, 685
AlwI GGATC 2 cut(s) 477, 610
Ama87I CYCGRG 4 cut(s) 224, 390, 427, 511
AoxI GGCC 6 cut(s) 79, 168, 201, 415, 648, 849
ApeKI GCWGC 2 cut(s) 328, 489
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 5 cut(s) 425, 478, 494, 496, 631
AspS9I GGNCC 5 cut(s) 80, 415, 648, 729, 925
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 3 cut(s) 350, 571, 889
AvaI CYCGRG 4 cut(s) 224, 390, 427, 511
AvaII GGWCC 2 cut(s) 729, 925
BanI GGYRCC 1 cut(s) 628
BanII GRGCYC 2 cut(s) 391, 486
BauI CACGAG 1 cut(s) 762
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 131, 795
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 340, 501
BccI CCATC 2 cut(s) 92, 307
BceAI ACGGC 7 cut(s) 14, 124, 155, 249, 338, 533, 713
BcgI CGANNNNNNTGC 4 cut(s) 570, 604, 822, 856
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 4 cut(s) 307, 363, 605, 685
BfoI RGCGCY 2 cut(s) 479, 632
BfrI CTTAAG 1 cut(s) 50
BglII AGATCT 1 cut(s) 507
BisI GCNGC 7 cut(s) 47, 320, 329, 418, 421, 490, 852
BlsI GCNGC 7 cut(s) 48, 321, 330, 419, 422, 491, 853
Bme1390I CCNGG 2 cut(s) 157, 626
Bme18I GGWCC 2 cut(s) 729, 925
BmeT110I CYCGRG 4 cut(s) 224, 390, 427, 511
BmgBI CACGTC 1 cut(s) 754
BmgT120I GGNCC 5 cut(s) 80, 415, 648, 729, 925
BmiI GGNNCC 6 cut(s) 82, 323, 485, 630, 730, 731
BmrFI CCNGG 2 cut(s) 157, 626
BpiI GAAGAC 2 cut(s) 131, 795
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 2 cut(s) 500, 919
BsaHI GRCGYC 2 cut(s) 629, 810
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 5 cut(s) 165, 198, 364, 426, 892
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 287, 317, 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 427, 631, 739, 934
Bse118I RCCGGY 1 cut(s) 631
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 5 cut(s) 165, 198, 364, 426, 892
BseGI GGATG 2 cut(s) 247, 271
BseLI CCNNNNNNNGG 4 cut(s) 427, 631, 739, 934
BsePI GCGCGC 1 cut(s) 492
BseRI GAGGAG 3 cut(s) 353, 755, 814
BseX3I CGGCCG 1 cut(s) 849
BseXI GCAGC 2 cut(s) 340, 501
BseYI CCCAGC 1 cut(s) 478
Bsh1236I CGCG 4 cut(s) 423, 494, 770, 854
Bsh1285I CGRYCG 1 cut(s) 852
BshFI GGCC 6 cut(s) 81, 170, 203, 417, 650, 851
BshNI GGYRCC 1 cut(s) 628
BsiEI CGRYCG 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 4 cut(s) 224, 390, 427, 511
BsiSI CCGG 6 cut(s) 325, 382, 576, 626, 632, 684
BslFI GGGAC 2 cut(s) 608, 742
BslI CCNNNNNNNGG 4 cut(s) 427, 631, 739, 934
BsmAI GTCTC 4 cut(s) 307, 363, 605, 685
BsmBI CGTCTC 2 cut(s) 307, 363
BsmFI GGGAC 2 cut(s) 608, 742
BsnI GGCC 6 cut(s) 81, 170, 203, 417, 650, 851
Bso31I GGTCTC 1 cut(s) 685
BsoBI CYCGRG 4 cut(s) 224, 390, 427, 511
Bsp1286I GDGCHC 2 cut(s) 391, 486
Bsp143I GATC 5 cut(s) 15, 144, 469, 507, 602
Bsp19I CCATGG 1 cut(s) 892
BspANI GGCC 6 cut(s) 81, 170, 203, 417, 650, 851
BspFNI CGCG 4 cut(s) 423, 494, 770, 854
BspLI GGNNCC 6 cut(s) 82, 323, 485, 630, 730, 731
BspPI GGATC 2 cut(s) 477, 610
BspT107I GGYRCC 1 cut(s) 628
BspTI CTTAAG 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 685
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 5 cut(s) 165, 198, 364, 426, 892
BssHII GCGCGC 1 cut(s) 492
BssMI GATC 5 cut(s) 15, 144, 469, 507, 602
BssNI GRCGYC 2 cut(s) 629, 810
BssSI CACGAG 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 165, 892
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 5 cut(s) 119, 272, 565, 616, 622
BstACI GRCGYC 2 cut(s) 629, 810
BstAFI CTTAAG 1 cut(s) 50
BstBAI YACGTR 2 cut(s) 500, 919
BstC8I GCNNGC 3 cut(s) 387, 494, 633
BstDEI CTNAG 1 cut(s) 945
BstDSI CCRYGG 1 cut(s) 892
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 2 cut(s) 247, 271
BstFNI CGCG 4 cut(s) 423, 494, 770, 854
BstH2I RGCGCY 2 cut(s) 479, 632
BstHHI GCGC 5 cut(s) 425, 478, 494, 496, 631
BstKTI GATC 5 cut(s) 18, 147, 472, 510, 605
BstMAI GTCTC 4 cut(s) 307, 363, 605, 685
BstMBI GATC 5 cut(s) 15, 144, 469, 507, 602
BstMCI CGRYCG 1 cut(s) 852
BstMWI GCNNNNNNNGC 4 cut(s) 136, 325, 328, 449
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 155, 624
BstUI CGCG 4 cut(s) 423, 494, 770, 854
BstV1I GCAGC 2 cut(s) 340, 501
BstV2I GAAGAC 2 cut(s) 131, 795
BstX2I RGATCY 2 cut(s) 469, 507
BstYI RGATCY 2 cut(s) 469, 507
BstZI CGGCCG 1 cut(s) 849
BsuRI GGCC 6 cut(s) 81, 170, 203, 417, 650, 851
BtgI CCRYGG 1 cut(s) 892
BtgZI GCGATG 1 cut(s) 608
BtrI CACGTC 1 cut(s) 754
BtsCI GGATG 2 cut(s) 247, 271
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 277, 588
Cac8I GCNNGC 3 cut(s) 387, 494, 633
CfoI GCGC 5 cut(s) 425, 478, 494, 496, 631
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 5 cut(s) 80, 415, 648, 729, 925
CseI GACGC 2 cut(s) 136, 320
Csp6I GTAC 1 cut(s) 544
CviAII CATG 2 cut(s) 893, 929
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 1 cut(s) 945
DinI GGCGCC 1 cut(s) 630
DpnI GATC 5 cut(s) 17, 146, 471, 509, 604
DpnII GATC 5 cut(s) 15, 144, 469, 507, 602
EaeI YGGCCR 1 cut(s) 849
EagI CGGCCG 1 cut(s) 849
EciI GGCGGA 5 cut(s) 126, 295, 550, 623, 650
Ecl136II GAGCTC 1 cut(s) 389
EclXI CGGCCG 1 cut(s) 849
Eco130I CCWWGG 2 cut(s) 165, 892
Eco24I GRGCYC 2 cut(s) 391, 486
Eco31I GGTCTC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 729, 925
Eco52I CGGCCG 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 389
Eco72I CACGTG 1 cut(s) 500
Eco88I CYCGRG 4 cut(s) 224, 390, 427, 511
EcoICRI GAGCTC 1 cut(s) 389
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 165, 892
EcoT38I GRGCYC 2 cut(s) 391, 486
EgeI GGCGCC 1 cut(s) 630
EheI GGCGCC 1 cut(s) 630
ErhI CCWWGG 2 cut(s) 165, 892
Esp3I CGTCTC 2 cut(s) 307, 363
FaeI CATG 2 cut(s) 896, 932
FaiI YATR 4 cut(s) 290, 292, 894, 930
FaqI GGGAC 2 cut(s) 608, 742
FatI CATG 2 cut(s) 892, 928
Fnu4HI GCNGC 7 cut(s) 47, 320, 329, 418, 421, 490, 852
FokI GGATG 2 cut(s) 254, 278
FriOI GRGCYC 2 cut(s) 391, 486
Fsp4HI GCNGC 7 cut(s) 47, 320, 329, 418, 421, 490, 852
GlaI GCGC 5 cut(s) 424, 477, 493, 495, 630
GluI GCNGC 7 cut(s) 47, 320, 329, 418, 421, 490, 852
GsaI CCCAGC 1 cut(s) 482
HaeII RGCGCY 2 cut(s) 479, 632
HaeIII GGCC 6 cut(s) 81, 170, 203, 417, 650, 851
HapII CCGG 6 cut(s) 325, 382, 576, 626, 632, 684
HgaI GACGC 2 cut(s) 136, 320
HhaI GCGC 5 cut(s) 425, 478, 494, 496, 631
Hin1I GRCGYC 2 cut(s) 629, 810
Hin1II CATG 2 cut(s) 896, 932
Hin6I GCGC 5 cut(s) 423, 476, 492, 494, 629
HinP1I GCGC 5 cut(s) 423, 476, 492, 494, 629
HindIII AAGCTT 2 cut(s) 208, 278
HinfI GANTC 7 cut(s) 245, 432, 525, 653, 671, 702, 765
HpaII CCGG 6 cut(s) 325, 382, 576, 626, 632, 684
HphI GGTGA 3 cut(s) 350, 571, 889
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 7 cut(s) 69, 199, 336, 368, 554, 707, 941
Hpy188III TCNNGA 7 cut(s) 19, 224, 392, 429, 436, 511, 529
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 6 cut(s) 145, 176, 336, 575, 812, 815
HpyAV CCTTC 3 cut(s) 49, 106, 854
HpyCH4III ACNGT 5 cut(s) 119, 272, 565, 616, 622
HpyCH4IV ACGT 4 cut(s) 499, 753, 810, 918
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 325, 328, 449
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 4 cut(s) 499, 753, 810, 918
Hsp92I GRCGYC 2 cut(s) 629, 810
Hsp92II CATG 2 cut(s) 896, 932
HspAI GCGC 5 cut(s) 423, 476, 492, 494, 629
KasI GGCGCC 1 cut(s) 628
KflI GGGWCCC 1 cut(s) 729
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Kzo9I GATC 5 cut(s) 15, 144, 469, 507, 602
LmnI GCTCC 5 cut(s) 316, 327, 384, 489, 578
Lsp1109I GCAGC 2 cut(s) 340, 501
MaeII ACGT 4 cut(s) 499, 753, 810, 918
MaeIII GTNAC 4 cut(s) 229, 559, 616, 905
MalI GATC 5 cut(s) 17, 146, 471, 509, 604
MbiI CCGCTC 1 cut(s) 319
MboI GATC 5 cut(s) 15, 144, 469, 507, 602
MboII GAAGA 2 cut(s) 136, 800
MflI RGATCY 2 cut(s) 469, 507
MhlI GDGCHC 2 cut(s) 391, 486
MluCI AATT 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 629
MlyI GAGTC 3 cut(s) 534, 662, 774
MmeI TCCRAC 3 cut(s) 314, 837, 903
MreI CGCCGGCG 1 cut(s) 631
MroNI GCCGGC 1 cut(s) 631
MseI TTAA 3 cut(s) 51, 212, 401
MspCI CTTAAG 1 cut(s) 50
MspI CCGG 6 cut(s) 325, 382, 576, 626, 632, 684
MspR9I CCNGG 2 cut(s) 157, 626
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 4 cut(s) 423, 494, 770, 854
MwoI GCNNNNNNNGC 4 cut(s) 136, 325, 328, 449
NaeI GCCGGC 1 cut(s) 633
NarI GGCGCC 1 cut(s) 629
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 892
NdeII GATC 5 cut(s) 15, 144, 469, 507, 602
NgoMIV GCCGGC 1 cut(s) 631
NlaIII CATG 2 cut(s) 896, 932
NlaIV GGNNCC 6 cut(s) 82, 323, 485, 630, 730, 731
NmeAIII GCCGAG 2 cut(s) 334, 676
NmuCI GTSAC 2 cut(s) 559, 616
PaeR7I CTCGAG 2 cut(s) 224, 511
PauI GCGCGC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 245, 432, 671, 702
PkrI GCNGC 7 cut(s) 48, 321, 330, 419, 422, 491, 853
PleI GAGTC 3 cut(s) 533, 661, 773
PluTI GGCGCC 1 cut(s) 632
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 3 cut(s) 533, 661, 773
Ppu21I YACGTR 2 cut(s) 500, 919
PpuMI RGGWCCY 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 155
PspCI CACGTG 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 6 cut(s) 82, 323, 485, 630, 730, 731
PspPI GGNCC 5 cut(s) 80, 415, 648, 729, 925
PspPPI RGGWCCY 1 cut(s) 729
PsuI RGATCY 2 cut(s) 469, 507
PteI GCGCGC 1 cut(s) 492
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 3 cut(s) 51, 212, 401
SatI GCNGC 7 cut(s) 47, 320, 329, 418, 421, 490, 852
Sau3AI GATC 5 cut(s) 15, 144, 469, 507, 602
Sau96I GGNCC 5 cut(s) 80, 415, 648, 729, 925
SchI GAGTC 3 cut(s) 534, 662, 774
ScrFI CCNGG 2 cut(s) 157, 626
SduI GDGCHC 2 cut(s) 391, 486
SfoI GGCGCC 1 cut(s) 630
Sfr274I CTCGAG 2 cut(s) 224, 511
SgrAI CRCCGGYG 1 cut(s) 631
SinI GGWCC 2 cut(s) 729, 925
SlaI CTCGAG 2 cut(s) 224, 511
SmlI CTYRAG 3 cut(s) 50, 224, 511
SmoI CTYRAG 3 cut(s) 50, 224, 511
Sse9I AATT 1 cut(s) 74
SspDI GGCGCC 1 cut(s) 628
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 155, 624
StyI CCWWGG 2 cut(s) 165, 892
TaaI ACNGT 5 cut(s) 119, 272, 565, 616, 622
TaiI ACGT 4 cut(s) 502, 756, 813, 921
TaqI TCGA 5 cut(s) 99, 143, 174, 225, 512
TasI AATT 1 cut(s) 74
TauI GCSGC 5 cut(s) 49, 322, 420, 423, 854
TfiI GAWTC 4 cut(s) 245, 432, 671, 702
Tru1I TTAA 3 cut(s) 51, 212, 401
Tru9I TTAA 3 cut(s) 51, 212, 401
TscAI CASTG 2 cut(s) 277, 588
TseFI GTSAC 2 cut(s) 559, 616
TseI GCWGC 2 cut(s) 328, 489
Tsp45I GTSAC 2 cut(s) 559, 616
TspDTI ATGAA 2 cut(s) 611, 897
TspGWI ACGGA 6 cut(s) 24, 26, 52, 289, 615, 809
TspRI CASTG 2 cut(s) 277, 588
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 729, 925
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 2 cut(s) 224, 511
ZraI GACGTC 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.