Prupe.1G366100_v2.0.a1

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011843
Physical Location & Seq
Forward (+)
33568480 .. 33570220
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G366100.1

Sequence Viewer

Length: 696 bp
ATGGAGAATAACAATGAAACAGCAGCAGCAGGAGTGCAAGTGCAAGGTGTGAGGAGGATGAAGAGGGCGGAGATTGATACACGGCAACCATTCCGATCTGTCAAAGAAGCTGTTTCATTGTTCGGTGAAAAGTTTCTTGCAGGGGAACTCTATGCCACCCAGCTCAAACAGATGCAGAATGGAGCACATGAAAATGGGCATCGGCATGGCCCTGCATCCAGAATTGGAAGCGTGACAGCGGAGCTAGAGGAGACAAAACAAAGCCTCCAAAAAGCCAGAGAAGAAAGCGAGCTCATGGAAAATTGCCTTTCATCTCTAAAACAGGAGCTTGAACGGACAAAGCGAGAGCTCCATCAGTTGAAGGAAAGGGAATATGAGAAACAGTTTGTAGAAGCGGAGATCATCGAAGACGTTAGGAATATAGTTGAAGACTCAGACTCAACCAAATTTGAAATGAAAACACAAACATCTGATGAGGAAGAAGGAAGCTTTGAGTTTCAAAACAAAAGATATGTGACATTTGCAAATCCACCTTCCCTTGCGCAAGTAAAGATCGCACAAGGTTTAGGTGTTGATGAAAAATTGCAAAGACACCCTTCTCTTTCTCTCAAGAAGAAGAAAAACAAGCCATTCATTCCTCTAATAGCCGGGATGTTTTCTAAGAAGAAAGGAGGCCCACAAGTAGCCTATCCTTGA

Protein Analysis

232

Amino Acids

26.25

Weight (kDa)

7.8

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75720 AT1G75720 AT1G75720
fragaria_vesca FvH4_2g38540
malus_domestica MD08G1013500.v1.1 MD15G1013000.v1.1
prunus_persica Prupe.1G366100_v2.0.a1
pyrus_communis pycom08g01190 pycom15g01130
rosa_chinensis RchiOBHm_Chr6g0302771
rosa_laevigata RLG00000011139
rosa_roxburghii Rroxscaffold_7G00165340
rosa_rugosa Rorug06G0316700 Rorug06G0316800
rosa_samantha Rh6AG430200 Rh6BG472400 Rh6CG442700 Rh6DG429400
rosa_wichuraiana Rw6G037260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 543
AciI CCGC 3 cut(s) 68, 239, 395
AcsI RAATTY 1 cut(s) 446
AgsI TTSAA 5 cut(s) 332, 361, 428, 452, 500
AluBI AGCT 7 cut(s) 110, 163, 244, 292, 328, 349, 489
AluI AGCT 7 cut(s) 110, 163, 244, 292, 328, 349, 489
Alw21I GWGCWC 3 cut(s) 187, 294, 351
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 2 cut(s) 208, 673
ApeKI GCWGC 2 cut(s) 23, 26
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 209, 674
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 1 cut(s) 137
BanII GRGCYC 2 cut(s) 294, 351
BbsI GAAGAC 2 cut(s) 414, 435
Bbv12I GWGCWC 3 cut(s) 187, 294, 351
BbvI GCAGC 2 cut(s) 35, 38
BccI CCATC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
Bme1390I CCNGG 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 209, 674
BmrFI CCNGG 1 cut(s) 649
BmsI GCATC 3 cut(s) 162, 208, 224
BpiI GAAGAC 2 cut(s) 414, 435
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 649
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 249, 279
BseGI GGATG 3 cut(s) 63, 215, 657
BseMII CTCAG 1 cut(s) 447
BseRI GAGGAG 2 cut(s) 67, 263
BseXI GCAGC 2 cut(s) 35, 38
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 2 cut(s) 210, 675
BsiHKAI GWGCWC 3 cut(s) 187, 294, 351
BsiSI CCGG 1 cut(s) 648
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 210, 675
Bsp1286I GDGCHC 3 cut(s) 187, 294, 351
Bsp143I GATC 3 cut(s) 95, 399, 552
BspACI CCGC 3 cut(s) 68, 239, 395
BspANI GGCC 2 cut(s) 210, 675
BspCNI CTCAG 1 cut(s) 446
BssMI GATC 3 cut(s) 95, 399, 552
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 433, 660
BstF5I GGATG 3 cut(s) 63, 215, 657
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 3 cut(s) 98, 402, 555
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 3 cut(s) 95, 399, 552
BstSCI CCNGG 1 cut(s) 647
BstV1I GCAGC 2 cut(s) 35, 38
BstV2I GAAGAC 2 cut(s) 414, 435
BsuRI GGCC 2 cut(s) 210, 675
BtsCI GGATG 3 cut(s) 63, 215, 657
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 209, 674
CviAII CATG 3 cut(s) 188, 206, 295
DdeI CTNAG 2 cut(s) 433, 660
DpnI GATC 3 cut(s) 97, 401, 554
DpnII GATC 3 cut(s) 95, 399, 552
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 2 cut(s) 292, 349
Eco24I GRGCYC 2 cut(s) 294, 351
Eco53kI GAGCTC 2 cut(s) 292, 349
EcoICRI GAGCTC 2 cut(s) 292, 349
EcoT38I GRGCYC 2 cut(s) 294, 351
FaeI CATG 3 cut(s) 191, 209, 298
FaiI YATR 7 cut(s) 153, 189, 207, 296, 375, 422, 513
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FatI CATG 3 cut(s) 187, 205, 294
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 3 cut(s) 70, 202, 664
FriOI GRGCYC 2 cut(s) 294, 351
Fsp4HI GCNGC 2 cut(s) 24, 27
FspBI CTAG 1 cut(s) 245
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 1 cut(s) 543
GluI GCNGC 2 cut(s) 24, 27
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 210, 675
HapII CCGG 1 cut(s) 648
HhaI GCGC 1 cut(s) 544
Hin1II CATG 3 cut(s) 191, 209, 298
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 2 cut(s) 431, 437
HpaII CCGG 1 cut(s) 648
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 95, 436, 472
Hpy188III TCNNGA 2 cut(s) 219, 610
HpyAV CCTTC 4 cut(s) 355, 476, 543, 606
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 7 cut(s) 37, 43, 140, 175, 215, 524, 586
HpyF3I CTNAG 2 cut(s) 433, 660
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 191, 209, 298
HspAI GCGC 1 cut(s) 542
Kzo9I GATC 3 cut(s) 95, 399, 552
LmnI GCTCC 4 cut(s) 182, 241, 325, 354
LpnPI CCDG 8 cut(s) 15, 126, 173, 225, 232, 289, 308, 661
Lsp1109I GCAGC 2 cut(s) 35, 38
LweI GCATC 3 cut(s) 162, 208, 224
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 232, 514
MalI GATC 3 cut(s) 97, 401, 554
MboI GATC 3 cut(s) 95, 399, 552
MboII GAAGA 8 cut(s) 73, 293, 419, 440, 491, 625, 628, 676
MhlI GDGCHC 3 cut(s) 187, 294, 351
MluCI AATT 4 cut(s) 222, 301, 446, 581
MlyI GAGTC 2 cut(s) 425, 431
MnlI CCTC 8 cut(s) 45, 48, 57, 241, 275, 469, 648, 665
MroXI GAANNNNTTC 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 192, 204
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 649
NciI CCSGG 1 cut(s) 649
NdeII GATC 3 cut(s) 95, 399, 552
NlaIII CATG 3 cut(s) 191, 209, 298
NmuCI GTSAC 2 cut(s) 232, 514
NsbI TGCGCA 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 2 cut(s) 425, 431
PpsI GAGTC 2 cut(s) 425, 431
Psp124BI GAGCTC 2 cut(s) 294, 351
PspFI CCCAGC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 209, 674
RseI CAYNNNNRTG 2 cut(s) 192, 204
SacI GAGCTC 2 cut(s) 294, 351
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 3 cut(s) 95, 399, 552
Sau96I GGNCC 2 cut(s) 209, 674
SchI GAGTC 2 cut(s) 425, 431
ScrFI CCNGG 1 cut(s) 649
SduI GDGCHC 3 cut(s) 187, 294, 351
SfaNI GCATC 3 cut(s) 162, 208, 224
SmiMI CAYNNNNRTG 2 cut(s) 192, 204
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 4 cut(s) 222, 301, 446, 581
SsiI CCGC 3 cut(s) 68, 239, 395
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 2 cut(s) 294, 351
StyD4I CCNGG 1 cut(s) 647
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 405
TasI AATT 4 cut(s) 222, 301, 446, 581
TseFI GTSAC 2 cut(s) 232, 514
TseI GCWGC 2 cut(s) 23, 26
Tsp45I GTSAC 2 cut(s) 232, 514
TspDTI ATGAA 8 cut(s) 30, 74, 105, 204, 300, 470, 591, 622
TspGWI ACGGA 1 cut(s) 349
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.