Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011843

Physical Location & Seq

Genomic Coordinates Forward (+)

601054 .. 602760

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGAAAGAAGTAGGAGGAGGAGGAATGCAAGTGACGAGGACAAGGAGGGCGGAGATCGATACAAGGCAACCGTTCCGCTCCGTCAAAGAGGCAGTTGCGTTGTTCGGAGAAAAAGTTCTTGCCGGAGAGCTCTATGCCTCCCAGCTCAAACAGATGCAGAACGAAGCAAATGAAAATAGGCATGGCCCCGCATTATCCAGAATTGGAACTGTGAGAGCAGAACTAGAGGACACAAAACAAAGCCTCCAAAAAGCCAGACAAGAAAGTGAGCTCATGGAAAACTGCCTCTCTTCTCTAAAACAGGAGCTCGAACGCACAAAGCGAGAGCTCCAGCAACTGAAGGAACGGGAGTATGAAAAACACTTCATCGAAACGGAGATTGAAGACGTTAGGATTGTCGACGAAGACTCAACCAAGTTTACAACCAAAACACAAGCATCTAGTGAGGAAGATGAAAGTTTTGAGTTCCAAAAGAAAAGATATGTGGCATTTGGAAATCCACCTTCCGTGTCTCAAGTGATGATTGCACAAGGTGGTGTTCATGAAACATTGGAAAGACACCATTCTCTCACGAAAAAGAAGAAGAAGCCCATGATTCCTCTGATCGCCGGGATCTTTTCTAAGAAGAAAGGAAGCTCACAGGCTGCTTACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.92

Weight (kDa)

8.5

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75720 AT1G75720 AT1G75720
fragaria_vesca	FvH4_2g38540
malus_domestica	MD08G1013500.v1.1 MD15G1013000.v1.1
prunus_persica	Prupe.1G366100_v2.0.a1
pyrus_communis	pycom08g01190 pycom15g01130
rosa_chinensis	RchiOBHm_Chr6g0302771
rosa_laevigata	RLG00000011139
rosa_roxburghii	Rroxscaffold_7G00165340
rosa_rugosa	Rorug06G0316700 Rorug06G0316800
rosa_samantha	Rh6AG430200 Rh6BG472400 Rh6CG442700 Rh6DG429400
rosa_wichuraiana	Rw6G037260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	3 cut(s)	53, 79, 192
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	386
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	6 cut(s)	133, 148, 274, 310, 331, 639
AluI	AGCT	6 cut(s)	133, 148, 274, 310, 331, 639
Alw21I	GWGCWC	4 cut(s)	135, 276, 312, 333
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	613
BanII	GRGCYC	4 cut(s)	135, 276, 312, 333
BbsI	GAAGAC	2 cut(s)	393, 414
Bbv12I	GWGCWC	4 cut(s)	135, 276, 312, 333
BbvI	GCAGC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	227, 444
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	147, 449
BpiI	GAAGAC	2 cut(s)	393, 414
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 231, 261
BseCI	ATCGAT	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	33, 36
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	4 cut(s)	135, 276, 312, 333
BsiSI	CCGG	2 cut(s)	126, 612
BsmAI	GTCTC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	4 cut(s)	135, 276, 312, 333
Bsp143I	GATC	3 cut(s)	57, 606, 615
BspACI	CCGC	3 cut(s)	53, 79, 192
BspANI	GGCC	1 cut(s)	189
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	81
BssMI	GATC	3 cut(s)	57, 606, 615
Bst4CI	ACNGT	2 cut(s)	75, 214
Bst6I	CTCTTC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	624
BstKTI	GATC	3 cut(s)	60, 609, 618
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	3 cut(s)	57, 606, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	2 cut(s)	393, 414
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	340
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	60
CviAII	CATG	4 cut(s)	185, 277, 545, 595
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	3 cut(s)	59, 608, 617
DpnII	GATC	3 cut(s)	57, 606, 615
DraIII	CACNNNGTG	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	4 cut(s)	133, 274, 310, 331
Eco24I	GRGCYC	4 cut(s)	135, 276, 312, 333
Eco53kI	GAGCTC	4 cut(s)	133, 274, 310, 331
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	4 cut(s)	133, 274, 310, 331
EcoT38I	GRGCYC	4 cut(s)	135, 276, 312, 333
FaeI	CATG	4 cut(s)	188, 280, 548, 598
FaiI	YATR	7 cut(s)	138, 186, 278, 357, 486, 546, 596
FatI	CATG	4 cut(s)	184, 276, 544, 594
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	648
FriOI	GRGCYC	4 cut(s)	135, 276, 312, 333
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	2 cut(s)	227, 444
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	126, 612
Hin1II	CATG	4 cut(s)	188, 280, 548, 598
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	410, 598
HpaII	CCGG	2 cut(s)	126, 612
Hpy166II	GTNNAC	2 cut(s)	403, 423
Hpy188I	TCNGA	2 cut(s)	110, 606
Hpy188III	TCNNGA	3 cut(s)	201, 545, 574
Hpy8I	GTNNAC	2 cut(s)	403, 423
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	337, 516
HpyCH4III	ACNGT	2 cut(s)	75, 214
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	31, 160, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	188, 280, 548, 598
Kzo9I	GATC	3 cut(s)	57, 606, 615
LmnI	GCTCC	3 cut(s)	86, 307, 336
LpnPI	CCDG	8 cut(s)	139, 158, 214, 271, 290, 347, 625, 629
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	147, 449
MaeI	CTAG	2 cut(s)	227, 444
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	59, 608, 617
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	3 cut(s)	57, 606, 615
MboII	GAAGA	7 cut(s)	285, 398, 419, 464, 595, 598, 640
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	4 cut(s)	135, 276, 312, 333
MluCI	AATT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	117
MspI	CCGG	2 cut(s)	126, 612
MspR9I	CCNGG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	3 cut(s)	57, 606, 615
NlaIII	CATG	4 cut(s)	188, 280, 548, 598
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	4 cut(s)	135, 276, 312, 333
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	615
SacI	GAGCTC	4 cut(s)	135, 276, 312, 333
SalI	GTCGAC	1 cut(s)	401
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	57, 606, 615
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	4 cut(s)	135, 276, 312, 333
SetI	ASST	9 cut(s)	135, 150, 276, 312, 333, 393, 508, 538, 641
SfaNI	GCATC	2 cut(s)	147, 449
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	53, 79, 192
SspMI	CTAG	2 cut(s)	227, 444
SstI	GAGCTC	4 cut(s)	135, 276, 312, 333
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	75, 214
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	60, 312, 372, 402
TasI	AATT	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	189, 358, 372, 471, 533, 561
TspGWI	ACGGA	3 cut(s)	73, 392, 499
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	227, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.