Prupe.1G411900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017731
Physical Location & Seq
Forward (+)
35951475 .. 35952452
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G411900.1

Sequence Viewer

Length: 507 bp
ATGGAAGCTGGCCCAAAGTCTCCTTCGCCGGAAACTTCCATCTCCGATGAAATGGCCGGAAACTTCCCGGAGCTCATTGACCAACTCTCGCCGGACATGCCCATCGAAGAAGAGTTGATAGAGGAGGTCATGCAAGAGCTCTACAAGGAGATAACGCCAACTCCGGCGACGAACACTACCAAGCCGTCGTCACCGGCGGCAAGTTTTCCGACGCCGTCGCTGGTGGTCGGGAACGGGAAGAGCGAGAGCTGCGGGGCGTCGGTTTCCGACTCGGCGTCGACGGTGATGGCCGGCGTCAAGTTCGTGGGTCCCACCGGGAATAATGGGGGGTTTTCGCCTGAGAATGGGGTTGGGGCGTGGAGTGAATGCGGTGGTAATACTAATAATGGGTTGGTGGTTGGGAAGGGAGTGATGGACTGCTGCGATGCAGGGGAGGCTGTTGATGATGAATGGTTTGAGAGAGTGATGAATACGTGGGCCCCAGTGGATCTTGATCCATGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.58

Weight (kDa)

4.05

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 278
AciI CCGC 3 cut(s) 197, 252, 369
AclWI GGATC 2 cut(s) 488, 495
AcoI YGGCCR 2 cut(s) 54, 288
AcyI GRCGYC 4 cut(s) 212, 257, 275, 294
AfiI CCNNNNNNNGG 1 cut(s) 344
AhdI GACNNNNNGTC 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AluBI AGCT 4 cut(s) 8, 73, 139, 249
AluI AGCT 4 cut(s) 8, 73, 139, 249
Alw21I GWGCWC 2 cut(s) 75, 141
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 488, 495
AoxI GGCC 4 cut(s) 10, 54, 288, 477
ApaI GGGCCC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 249, 420
AspS9I GGNCC 4 cut(s) 11, 308, 477, 478
AsuC2I CCSGG 2 cut(s) 68, 316
AsuHPI GGTGA 2 cut(s) 183, 295
AvaII GGWCC 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 481
BanII GRGCYC 3 cut(s) 75, 141, 481
Bbv12I GWGCWC 2 cut(s) 75, 141
BbvI GCAGC 2 cut(s) 236, 407
BccI CCATC 4 cut(s) 47, 110, 280, 406
BceAI ACGGC 2 cut(s) 169, 199
BcnI CCSGG 2 cut(s) 68, 316
BcoDI GTCTC 1 cut(s) 24
BisI GCNGC 3 cut(s) 198, 250, 421
BlsI GCNGC 3 cut(s) 199, 251, 422
Bme1390I CCNGG 2 cut(s) 68, 316
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 4 cut(s) 11, 308, 477, 478
BmiI GGNNCC 4 cut(s) 309, 310, 479, 480
BmrFI CCNGG 2 cut(s) 68, 316
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 476
BpuMI CCSGG 2 cut(s) 68, 316
BsaAI YACGTR 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 4 cut(s) 212, 257, 275, 294
BsaJI CCNNGG 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 2 cut(s) 193, 290
Bse1I ACTGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 497
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 2 cut(s) 236, 407
BshFI GGCC 4 cut(s) 12, 56, 290, 479
BsiHKAI GWGCWC 2 cut(s) 75, 141
BsiSI CCGG 8 cut(s) 29, 57, 68, 92, 164, 194, 291, 315
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 4 cut(s) 12, 56, 290, 479
Bsp120I GGGCCC 1 cut(s) 477
Bsp1286I GDGCHC 3 cut(s) 75, 141, 481
Bsp143I GATC 2 cut(s) 487, 493
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 3 cut(s) 197, 252, 369
BspANI GGCC 4 cut(s) 12, 56, 290, 479
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 4 cut(s) 309, 310, 479, 480
BspPI GGATC 2 cut(s) 488, 495
BspQI GCTCTTC 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 193, 290
BsrI ACTGG 1 cut(s) 482
BssAI RCCGGY 2 cut(s) 193, 290
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 2 cut(s) 487, 493
BssNI GRCGYC 4 cut(s) 212, 257, 275, 294
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 105, 233
BstACI GRCGYC 4 cut(s) 212, 257, 275, 294
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 10, 292
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 497
BstKTI GATC 2 cut(s) 490, 496
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 487, 493
BstMWI GCNNNNNNNGC 3 cut(s) 97, 249, 434
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 66, 314
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 236, 407
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 4 cut(s) 12, 56, 290, 479
BtgI CCRYGG 1 cut(s) 497
BtgZI GCGATG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 2 cut(s) 10, 292
Cfr10I RCCGGY 2 cut(s) 193, 290
Cfr13I GGNCC 4 cut(s) 11, 308, 477, 478
CseI GACGC 4 cut(s) 220, 246, 264, 283
CviAII CATG 3 cut(s) 97, 130, 498
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 489, 495
DpnII GATC 2 cut(s) 487, 493
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 2 cut(s) 54, 288
Eam1104I CTCTTC 2 cut(s) 105, 233
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 2 cut(s) 105, 233
Ecl136II GAGCTC 2 cut(s) 73, 139
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 3 cut(s) 75, 141, 481
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 2 cut(s) 73, 139
EcoICRI GAGCTC 2 cut(s) 73, 139
EcoO109I RGGNCCY 2 cut(s) 308, 478
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 3 cut(s) 75, 141, 481
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 3 cut(s) 100, 133, 501
FaiI YATR 3 cut(s) 98, 131, 499
FaqI GGGAC 1 cut(s) 294
FatI CATG 3 cut(s) 96, 129, 497
FauI CCCGC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 198, 250, 421
FriOI GRGCYC 3 cut(s) 75, 141, 481
Fsp4HI GCNGC 3 cut(s) 198, 250, 421
GluI GCNGC 3 cut(s) 198, 250, 421
HaeIII GGCC 4 cut(s) 12, 56, 290, 479
HapII CCGG 8 cut(s) 29, 57, 68, 92, 164, 194, 291, 315
HgaI GACGC 4 cut(s) 220, 246, 264, 283
Hin1I GRCGYC 4 cut(s) 212, 257, 275, 294
Hin1II CATG 3 cut(s) 100, 133, 501
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 1 cut(s) 269
HpaII CCGG 8 cut(s) 29, 57, 68, 92, 164, 194, 291, 315
HphI GGTGA 2 cut(s) 183, 295
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 4 cut(s) 46, 210, 268, 506
Hpy188III TCNNGA 2 cut(s) 229, 491
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 7 cut(s) 172, 190, 214, 220, 262, 280, 283
HpyAV CCTTC 2 cut(s) 33, 397
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 133, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 249, 434
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 473
Hsp92I GRCGYC 4 cut(s) 212, 257, 275, 294
Hsp92II CATG 3 cut(s) 100, 133, 501
KflI GGGWCCC 1 cut(s) 308
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 487, 493
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 236, 407
LweI GCATC 1 cut(s) 415
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 189
MalI GATC 2 cut(s) 489, 495
MboI GATC 2 cut(s) 487, 493
MboII GAAGA 3 cut(s) 119, 122, 250
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 3 cut(s) 75, 141, 481
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 233, 291
MnlI CCTC 3 cut(s) 115, 118, 427
MroNI GCCGGC 1 cut(s) 290
MspI CCGG 8 cut(s) 29, 57, 68, 92, 164, 194, 291, 315
MspR9I CCNGG 2 cut(s) 68, 316
Mva1269I GAATGC 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 97, 249, 434
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 68, 316
NcoI CCATGG 1 cut(s) 497
NdeII GATC 2 cut(s) 487, 493
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 3 cut(s) 100, 133, 501
NlaIV GGNNCC 4 cut(s) 309, 310, 479, 480
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 189
NspI RCATGY 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 371
PdiI GCCGGC 1 cut(s) 292
PflFI GACNNNGTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 199, 251, 422
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 308
Psp124BI GAGCTC 2 cut(s) 75, 141
Psp5II RGGWCCY 1 cut(s) 308
PspN4I GGNNCC 4 cut(s) 309, 310, 479, 480
PspOMI GGGCCC 1 cut(s) 477
PspPI GGNCC 4 cut(s) 11, 308, 477, 478
PspPPI RGGWCCY 1 cut(s) 308
PsuI RGATCY 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 214
SacI GAGCTC 2 cut(s) 75, 141
SalI GTCGAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 233
SatI GCNGC 3 cut(s) 198, 250, 421
Sau3AI GATC 2 cut(s) 487, 493
Sau96I GGNCC 4 cut(s) 11, 308, 477, 478
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 68, 316
SduI GDGCHC 3 cut(s) 75, 141, 481
SetI ASST 6 cut(s) 10, 75, 129, 141, 251, 476
SfaNI GCATC 1 cut(s) 415
SgrAI CRCCGGYG 1 cut(s) 193
SgrDI CGTCGACG 1 cut(s) 277
SinI GGWCC 1 cut(s) 308
SsiI CCGC 3 cut(s) 197, 252, 369
SstI GAGCTC 2 cut(s) 75, 141
StyD4I CCNGG 2 cut(s) 66, 314
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 476
TaqI TCGA 2 cut(s) 105, 278
TauI GCSGC 1 cut(s) 200
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 2 cut(s) 249, 420
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 3 cut(s) 63, 462, 482
TspRI CASTG 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 308
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.