Rroxscaffold_7G00158170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017731
Physical Location & Seq
Forward (+)
1696036 .. 1696497
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158170.1

Sequence Viewer

Length: 462 bp
ATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCCGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACGACGACGACGACCGGCACTGCCACCACGGCCGAAAAGCCGTCGTGGACGGCTGCGGGATACGGTGCAACGGGGCAGTGTTTGCGGTGGAACGGCTGGGAGAGCGAGAGCTGCGGGGCGGCGGTTTCGGACTCGGCGTCGACGGTGATGGCCGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCGCCGGAGAGCGGGGGCTGTGGTGTTGTAAATGCTGGAGTAATGGGGGGTTGGTGGTGGTTGCTGGGAACGGGGAGGGAGGAGAGATCAACGGCTGTGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGGCGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.36

Weight (kDa)

4.96

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 289, 295
AccBSI CCGCTC 2 cut(s) 70, 306
AccI GTMKAC 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 8 cut(s) 70, 167, 196, 225, 230, 233, 306, 428
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 2 cut(s) 141, 261
AcyI GRCGYC 2 cut(s) 248, 296
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 305
AhdI GACNNNNNGTC 1 cut(s) 247
AluBI AGCT 3 cut(s) 40, 94, 222
AluI AGCT 3 cut(s) 40, 94, 222
Alw21I GWGCWC 2 cut(s) 42, 96
AlwI GGATC 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 141, 261, 404
ApeKI GCWGC 2 cut(s) 164, 222
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 2 cut(s) 265, 280
AsuHPI GGTGA 2 cut(s) 268, 442
BanI GGYRCC 2 cut(s) 289, 295
BanII GRGCYC 2 cut(s) 42, 96
Bbv12I GWGCWC 2 cut(s) 42, 96
BbvI GCAGC 2 cut(s) 151, 209
BccI CCATC 2 cut(s) 253, 417
BceAI ACGGC 5 cut(s) 136, 156, 177, 220, 402
BciVI GTATCC 1 cut(s) 164
BcnI CCSGG 2 cut(s) 265, 280
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 299
BfuI GTATCC 1 cut(s) 164
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 3 cut(s) 165, 223, 231
BlsI GCNGC 3 cut(s) 166, 224, 232
Bme1390I CCNGG 2 cut(s) 265, 280
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 4 cut(s) 54, 291, 297, 405
BmrFI CCNGG 2 cut(s) 265, 280
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 2 cut(s) 265, 280
BsaHI GRCGYC 2 cut(s) 248, 296
BsaJI CCNNGG 3 cut(s) 138, 264, 407
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 2 cut(s) 125, 292
BseAI TCCGGA 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 138, 264, 407
BseGI GGATG 2 cut(s) 10, 441
BseLI CCNNNNNNNGG 1 cut(s) 305
BseRI GAGGAG 4 cut(s) 389, 424, 454, 457
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 151, 209
BseYI CCCAGC 2 cut(s) 207, 358
Bsh1285I CGRYCG 2 cut(s) 126, 144
BshFI GGCC 3 cut(s) 143, 263, 406
BshNI GGYRCC 2 cut(s) 289, 295
BsiEI CGRYCG 2 cut(s) 126, 144
BsiHKAI GWGCWC 2 cut(s) 42, 96
BsiSI CCGG 7 cut(s) 23, 47, 126, 264, 279, 293, 299
BslI CCNNNNNNNGG 1 cut(s) 305
BsnI GGCC 3 cut(s) 143, 263, 406
Bsp1286I GDGCHC 2 cut(s) 42, 96
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 380, 414
BspACI CCGC 8 cut(s) 70, 167, 196, 225, 230, 233, 306, 428
BspANI GGCC 3 cut(s) 143, 263, 406
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 4 cut(s) 54, 291, 297, 405
BspPI GGATC 1 cut(s) 422
BspQI GCTCTTC 2 cut(s) 30, 60
BspT107I GGYRCC 2 cut(s) 289, 295
BsrBI CCGCTC 2 cut(s) 70, 306
BsrFI RCCGGY 2 cut(s) 125, 292
BssAI RCCGGY 2 cut(s) 125, 292
BssECI CCNNGG 3 cut(s) 138, 264, 407
BssMI GATC 2 cut(s) 380, 414
BssNI GRCGYC 2 cut(s) 248, 296
Bst4CI ACNGT 2 cut(s) 176, 256
Bst6I CTCTTC 2 cut(s) 30, 60
BstACI GRCGYC 2 cut(s) 248, 296
BstAPI GCANNNNNTGC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 10, 441
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 383, 417
BstMBI GATC 2 cut(s) 380, 414
BstMCI CGRYCG 2 cut(s) 126, 144
BstMWI GCNNNNNNNGC 4 cut(s) 140, 193, 213, 222
BstSCI CCNGG 2 cut(s) 263, 278
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 151, 209
BstZI CGGCCG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 3 cut(s) 143, 263, 406
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 10, 441
BtsI GCAGTG 2 cut(s) 129, 194
BtsIMutI CAGTG 2 cut(s) 129, 194
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 125, 292
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 2 cut(s) 4, 237
Csp6I GTAC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 1 cut(s) 85
CviQI GTAC 1 cut(s) 274
DinI GGCGCC 1 cut(s) 297
DpnI GATC 2 cut(s) 382, 416
DpnII GATC 2 cut(s) 380, 414
DriI GACNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 2 cut(s) 141, 261
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 30, 60
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 2 cut(s) 30, 60
Ecl136II GAGCTC 2 cut(s) 40, 94
EclXI CGGCCG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 42, 96
Eco52I CGGCCG 1 cut(s) 141
Eco53kI GAGCTC 2 cut(s) 40, 94
EcoICRI GAGCTC 2 cut(s) 40, 94
EcoT38I GRGCYC 2 cut(s) 42, 96
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 11, 59, 86
FatI CATG 1 cut(s) 84
FauI CCCGC 3 cut(s) 160, 218, 299
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 165, 223, 231
FokI GGATG 2 cut(s) 17, 448
FriOI GRGCYC 2 cut(s) 42, 96
Fsp4HI GCNGC 3 cut(s) 165, 223, 231
GlaI GCGC 1 cut(s) 297
GluI GCNGC 3 cut(s) 165, 223, 231
GsaI CCCAGC 2 cut(s) 211, 362
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 3 cut(s) 143, 263, 406
HapII CCGG 7 cut(s) 23, 47, 126, 264, 279, 293, 299
HgaI GACGC 2 cut(s) 4, 237
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 2 cut(s) 248, 296
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 1 cut(s) 242
HpaII CCGG 7 cut(s) 23, 47, 126, 264, 279, 293, 299
HphI GGTGA 2 cut(s) 268, 442
Hpy166II GTNNAC 2 cut(s) 159, 252
Hpy188I TCNGA 2 cut(s) 241, 419
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 159, 252
Hpy99I CGWCG 8 cut(s) 20, 115, 118, 121, 124, 157, 253, 256
HpyCH4III ACNGT 2 cut(s) 176, 256
HpyCH4V TGCA 2 cut(s) 88, 179
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 193, 213, 222
Hsp92I GRCGYC 2 cut(s) 248, 296
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 296
KasI GGCGCC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 46
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 380, 414
LguI GCTCTTC 2 cut(s) 30, 60
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 151, 209
MalI GATC 2 cut(s) 382, 416
MbiI CCGCTC 2 cut(s) 70, 306
MboI GATC 2 cut(s) 380, 414
MboII GAAGA 3 cut(s) 47, 77, 432
MhlI GDGCHC 2 cut(s) 42, 96
Mly113I GGCGCC 1 cut(s) 296
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 9 cut(s) 43, 363, 367, 402, 405, 426, 432, 435, 449
MroI TCCGGA 1 cut(s) 46
MroNI GCCGGC 1 cut(s) 292
MspI CCGG 7 cut(s) 23, 47, 126, 264, 279, 293, 299
MspR9I CCNGG 2 cut(s) 265, 280
MwoI GCNNNNNNNGC 4 cut(s) 140, 193, 213, 222
NaeI GCCGGC 1 cut(s) 294
NarI GGCGCC 1 cut(s) 296
NciI CCSGG 2 cut(s) 265, 280
NdeII GATC 2 cut(s) 380, 414
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 4 cut(s) 54, 291, 297, 405
NmeAIII GCCGAG 2 cut(s) 224, 432
PciSI GCTCTTC 2 cut(s) 30, 60
PcsI WCGNNNNNNNCGW 4 cut(s) 24, 116, 119, 245
PdiI GCCGGC 1 cut(s) 294
PkrI GCNGC 3 cut(s) 166, 224, 232
PleI GAGTC 1 cut(s) 236
PluTI GGCGCC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 2 cut(s) 42, 96
PspFI CCCAGC 2 cut(s) 207, 358
PspN4I GGNNCC 4 cut(s) 54, 291, 297, 405
PspPI GGNCC 1 cut(s) 404
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 2 cut(s) 42, 96
SalI GTCGAC 1 cut(s) 250
SapI GCTCTTC 2 cut(s) 30, 60
SatI GCNGC 3 cut(s) 165, 223, 231
Sau3AI GATC 2 cut(s) 380, 414
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 265, 280
SduI GDGCHC 2 cut(s) 42, 96
SetI ASST 4 cut(s) 42, 54, 96, 224
SfcI CTRYAG 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 297
SgrDI CGTCGACG 1 cut(s) 250
SsiI CCGC 8 cut(s) 70, 167, 196, 225, 230, 233, 306, 428
SspDI GGCGCC 1 cut(s) 295
SstI GAGCTC 2 cut(s) 42, 96
StyD4I CCNGG 2 cut(s) 263, 278
TaaI ACNGT 2 cut(s) 176, 256
TaqI TCGA 1 cut(s) 251
TauI GCSGC 1 cut(s) 233
TscAI CASTG 2 cut(s) 136, 194
TseI GCWGC 2 cut(s) 164, 222
TspDTI ATGAA 1 cut(s) 73
TspRI CASTG 2 cut(s) 136, 194
XmiI GTMKAC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.