RchiOBHm_Chr6g0310921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017731
Physical Location & Seq
Reverse (-)
68097537 .. 68098537
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27959

Sequence Viewer

Length: 633 bp
ATGAGAAGCCCACGTCATTACTCTGCACTCCAGTCCTACGTGGCAGACTGCCACCTCAGCACCCCACTTTTCAAACCTCCATTTATATCCTCCATTTCCTCTTCGCCCACTCTGCTCTGGAGTTCAAGTTTTCCGCCGGAATGTCTGATCACCGGCGAAACGTCCAGGAAATATATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCCGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACGACGACGACCGGCACTGCCACCTCGGCCGAAAAGCCGTCGTGGACGGCGGCGGGATACGGTGCAACGGGGCAGTGTTTGCGGTGGAACGGCTGGGAGAGCGAGAGCTGCGGGGCGGCTGTTTCGGACTCGGAGTCGACGGTGATGGCGGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCACCGGAGAGCGGGGGGCTGTGCGGTTGTAAATGCTGGAGTAATGGGGGTTGGTGGTGGTTGCTGGGAACGGGGAGGGAGGAGAGATCAACGGCTGTGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGACGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.99

Weight (kDa)

5.8

Isoelectric Point (pI)

77.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 460, 466
AccBSI CCGCTC 2 cut(s) 244, 477
AccI GTMKAC 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 220
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 312
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 73, 126
AhdI GACNNNNNGTC 1 cut(s) 418
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 214, 268, 393
AluI AGCT 3 cut(s) 214, 268, 393
Alw21I GWGCWC 2 cut(s) 216, 270
AlwI GGATC 1 cut(s) 593
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 2 cut(s) 312, 575
ApeKI GCWGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 3 cut(s) 142, 439, 613
BanI GGYRCC 2 cut(s) 460, 466
BanII GRGCYC 2 cut(s) 216, 270
Bbv12I GWGCWC 2 cut(s) 216, 270
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 380
BccI CCATC 2 cut(s) 424, 588
BceAI ACGGC 4 cut(s) 307, 348, 391, 573
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 1 cut(s) 335
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 451
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 3 cut(s) 336, 394, 402
BlsI GCNGC 3 cut(s) 337, 395, 403
Bme1390I CCNGG 2 cut(s) 166, 451
BmeRI GACNNNNNGTC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 4 cut(s) 228, 462, 468, 576
BmrFI CCNGG 2 cut(s) 166, 451
BpmI CTGGAG 3 cut(s) 14, 139, 523
Bpu10I CCTNAGC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 309, 578
BsaWI WCCGGW 2 cut(s) 220, 469
BsaXI ACNNNNNCTCC 3 cut(s) 112, 142, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse118I RCCGGY 3 cut(s) 152, 296, 463
Bse1I ACTGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 309, 578
BseGI GGATG 2 cut(s) 184, 612
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 4 cut(s) 560, 595, 625, 628
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 380
BseYI CCCAGC 2 cut(s) 378, 529
BsgI GTGCAG 1 cut(s) 9
Bsh1285I CGRYCG 2 cut(s) 297, 315
BshFI GGCC 2 cut(s) 314, 577
BshNI GGYRCC 2 cut(s) 460, 466
BsiEI CGRYCG 2 cut(s) 297, 315
BsiHKAI GWGCWC 2 cut(s) 216, 270
BsiSI CCGG 8 cut(s) 137, 153, 197, 221, 297, 450, 464, 470
BslI CCNNNNNNNGG 1 cut(s) 476
BsnI GGCC 2 cut(s) 314, 577
Bsp1286I GDGCHC 2 cut(s) 216, 270
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 147, 551, 585
BspANI GGCC 2 cut(s) 314, 577
BspCNI CTCAG 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 4 cut(s) 228, 462, 468, 576
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 2 cut(s) 204, 234
BspT107I GGYRCC 2 cut(s) 460, 466
BsrBI CCGCTC 2 cut(s) 244, 477
BsrFI RCCGGY 3 cut(s) 152, 296, 463
BsrI ACTGG 1 cut(s) 31
BssAI RCCGGY 3 cut(s) 152, 296, 463
BssECI CCNNGG 2 cut(s) 309, 578
BssMI GATC 3 cut(s) 147, 551, 585
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 347, 427, 601
Bst6I CTCTTC 3 cut(s) 106, 204, 234
BstAPI GCANNNNNTGC 1 cut(s) 364
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 184, 612
BstKTI GATC 3 cut(s) 150, 554, 588
BstMBI GATC 3 cut(s) 147, 551, 585
BstMCI CGRYCG 2 cut(s) 297, 315
BstMWI GCNNNNNNNGC 6 cut(s) 57, 112, 311, 364, 384, 393
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 164, 449
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 380
BstZI CGGCCG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 314, 577
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 184, 612
BtsI GCAGTG 2 cut(s) 300, 365
BtsIMutI CAGTG 2 cut(s) 300, 365
Cac8I GCNNGC 1 cut(s) 465
Cfr10I RCCGGY 3 cut(s) 152, 296, 463
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 445
CspCI CAANNNNNGTGG 2 cut(s) 543, 578
CviAII CATG 1 cut(s) 259
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 1 cut(s) 56
DpnI GATC 3 cut(s) 149, 553, 587
DpnII GATC 3 cut(s) 147, 551, 585
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 312
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 106, 204, 234
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 3 cut(s) 106, 204, 234
EciI GGCGGA 1 cut(s) 123
Ecl136II GAGCTC 2 cut(s) 214, 268
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 216, 270
Eco52I CGGCCG 1 cut(s) 312
Eco53kI GAGCTC 2 cut(s) 214, 268
EcoICRI GAGCTC 2 cut(s) 214, 268
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 216, 270
FaeI CATG 1 cut(s) 262
FaiI YATR 6 cut(s) 86, 174, 176, 185, 233, 260
FatI CATG 1 cut(s) 258
FauI CCCGC 4 cut(s) 331, 389, 427, 470
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 336, 394, 402
FokI GGATG 2 cut(s) 191, 619
FriOI GRGCYC 2 cut(s) 216, 270
Fsp4HI GCNGC 3 cut(s) 336, 394, 402
GluI GCNGC 3 cut(s) 336, 394, 402
GsaI CCCAGC 2 cut(s) 382, 533
GsuI CTGGAG 3 cut(s) 14, 139, 523
HaeIII GGCC 2 cut(s) 314, 577
HapII CCGG 8 cut(s) 137, 153, 197, 221, 297, 450, 464, 470
HgaI GACGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 2 cut(s) 413, 419
HpaII CCGG 8 cut(s) 137, 153, 197, 221, 297, 450, 464, 470
HphI GGTGA 3 cut(s) 142, 439, 613
Hpy166II GTNNAC 2 cut(s) 330, 423
Hpy188I TCNGA 4 cut(s) 147, 412, 418, 590
Hpy188III TCNNGA 2 cut(s) 118, 221
Hpy8I GTNNAC 2 cut(s) 330, 423
Hpy99I CGWCG 6 cut(s) 194, 289, 292, 295, 328, 427
HpyCH4III ACNGT 3 cut(s) 347, 427, 601
HpyCH4IV ACGT 3 cut(s) 13, 39, 161
HpyCH4V TGCA 3 cut(s) 26, 262, 350
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 112, 311, 364, 384, 393
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 3 cut(s) 13, 39, 161
Hsp92II CATG 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 220
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 147, 551, 585
LguI GCTCTTC 2 cut(s) 204, 234
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 380
MaeII ACGT 3 cut(s) 13, 39, 161
MalI GATC 3 cut(s) 149, 553, 587
MbiI CCGCTC 2 cut(s) 244, 477
MboI GATC 3 cut(s) 147, 551, 585
MboII GAAGA 4 cut(s) 93, 221, 251, 603
MhlI GDGCHC 2 cut(s) 216, 270
MlyI GAGTC 2 cut(s) 407, 428
MroI TCCGGA 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 463
MspI CCGG 8 cut(s) 137, 153, 197, 221, 297, 450, 464, 470
MspR9I CCNGG 2 cut(s) 166, 451
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 6 cut(s) 57, 112, 311, 364, 384, 393
NaeI GCCGGC 1 cut(s) 465
NciI CCSGG 1 cut(s) 451
NdeII GATC 3 cut(s) 147, 551, 585
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 4 cut(s) 228, 462, 468, 576
NmeAIII GCCGAG 2 cut(s) 290, 603
PciSI GCTCTTC 2 cut(s) 204, 234
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 290
PdiI GCCGGC 1 cut(s) 465
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 3 cut(s) 337, 395, 403
PleI GAGTC 2 cut(s) 407, 427
PpsI GAGTC 2 cut(s) 407, 427
Ppu21I YACGTR 1 cut(s) 40
Psp124BI GAGCTC 2 cut(s) 216, 270
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 378, 529
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 4 cut(s) 228, 462, 468, 576
PspPI GGNCC 1 cut(s) 575
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SacI GAGCTC 2 cut(s) 216, 270
SalI GTCGAC 1 cut(s) 421
SapI GCTCTTC 2 cut(s) 204, 234
SatI GCNGC 3 cut(s) 336, 394, 402
Sau3AI GATC 3 cut(s) 147, 551, 585
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 407, 428
ScrFI CCNGG 2 cut(s) 166, 451
SduI GDGCHC 2 cut(s) 216, 270
SfcI CTRYAG 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 152
SstI GAGCTC 2 cut(s) 216, 270
StyD4I CCNGG 2 cut(s) 164, 449
TaaI ACNGT 3 cut(s) 347, 427, 601
TaiI ACGT 3 cut(s) 16, 42, 164
TaqI TCGA 1 cut(s) 422
TauI GCSGC 2 cut(s) 338, 404
TscAI CASTG 2 cut(s) 307, 365
TseI GCWGC 1 cut(s) 393
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 2 cut(s) 307, 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.