RLG00000010450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017731
Physical Location & Seq
Forward (+)
1718249 .. 1718833
585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010450

Sequence Viewer

Length: 585 bp
ATGGAAGGGAGTTCAAGTAGTTTTCCGCCGGAATATCTGATCACCGGCGAAACGTCCAGGAAATATATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCCGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACCGGCACTGCCACCTCGCCCGAAAATCCGTCGTGGACGGCTGCGGGATACGGTGCAACGGGTCAGTGTTTGCGGTGGAACGGCTGGGAGAGCGAGAGCTGCGGGGCGGCGGTTTCGGACTCGGCGTCGACGGTGATGGCGGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCACCGGAGAGCGGGGGGCTGTGCGGTTGTAAATGCTGGAGTAATGGGGGGTTGGTGGTGGTTGCTGGGAACGGGGAGGGAGGAGAGATCAACGGCTGCGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGACGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGATGAGTTGGGGCCTAGCGGATCTTGTACCTGGTTTCTGGAATGATGTACACTCTGGTGGGTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.59

Weight (kDa)

4.08

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 343, 349
AccBSI CCGCTC 2 cut(s) 136, 360
AccI GTMKAC 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 112
AclWI GGATC 2 cut(s) 477, 543
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 3 cut(s) 329, 543, 564
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 56, 544
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 3 cut(s) 106, 160, 276
AluI AGCT 3 cut(s) 106, 160, 276
Alw21I GWGCWC 2 cut(s) 108, 162
AlwI GGATC 2 cut(s) 477, 543
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 2 cut(s) 459, 526
ApeKI GCWGC 3 cut(s) 218, 276, 444
AspS9I GGNCC 2 cut(s) 459, 526
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 34, 322, 497, 526
BanI GGYRCC 2 cut(s) 343, 349
BanII GRGCYC 2 cut(s) 108, 162
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 108, 162
BbvI GCAGC 3 cut(s) 205, 263, 431
BccI CCATC 2 cut(s) 307, 472
BceAI ACGGC 3 cut(s) 231, 274, 457
BciT130I CCWGG 2 cut(s) 58, 546
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 334
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 218
BisI GCNGC 4 cut(s) 219, 277, 285, 445
BlsI GCNGC 4 cut(s) 220, 278, 286, 446
Bme1390I CCNGG 3 cut(s) 58, 334, 546
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 459, 526
BmiI GGNNCC 5 cut(s) 120, 345, 351, 460, 527
BmrFI CCNGG 3 cut(s) 58, 334, 546
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 2 cut(s) 112, 352
BsaXI ACNNNNNCTCC 3 cut(s) 31, 488, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 3 cut(s) 44, 179, 346
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 58, 546
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 76, 496
BseLI CCNNNNNNNGG 1 cut(s) 359
BseRI GAGGAG 4 cut(s) 444, 479, 509, 512
BseXI GCAGC 3 cut(s) 205, 263, 431
BseYI CCCAGC 2 cut(s) 261, 413
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 461, 528
BshNI GGYRCC 2 cut(s) 343, 349
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 108, 162
BsiSI CCGG 8 cut(s) 29, 45, 89, 113, 180, 333, 347, 353
BslI CCNNNNNNNGG 1 cut(s) 359
BsnI GGCC 2 cut(s) 461, 528
Bsp1286I GDGCHC 2 cut(s) 108, 162
Bsp13I TCCGGA 1 cut(s) 112
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 39, 435, 469, 535
BspANI GGCC 2 cut(s) 461, 528
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 120, 345, 351, 460, 527
BspPI GGATC 2 cut(s) 477, 543
BspQI GCTCTTC 2 cut(s) 96, 126
BspT107I GGYRCC 2 cut(s) 343, 349
BsrBI CCGCTC 2 cut(s) 136, 360
BsrFI RCCGGY 3 cut(s) 44, 179, 346
BsrGI TGTACA 1 cut(s) 562
BssAI RCCGGY 3 cut(s) 44, 179, 346
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 4 cut(s) 39, 435, 469, 535
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 2 cut(s) 58, 546
Bst4CI ACNGT 3 cut(s) 230, 310, 485
Bst6I CTCTTC 2 cut(s) 96, 126
BstACI GRCGYC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 76, 496
BstKTI GATC 4 cut(s) 42, 438, 472, 538
BstMBI GATC 4 cut(s) 39, 435, 469, 535
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 267, 276
BstNI CCWGG 2 cut(s) 58, 546
BstSCI CCNGG 3 cut(s) 56, 332, 544
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 205, 263, 431
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 2 cut(s) 461, 528
BtsCI GGATG 2 cut(s) 76, 496
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 248
Cac8I GCNNGC 1 cut(s) 348
Cfr10I RCCGGY 3 cut(s) 44, 179, 346
Cfr13I GGNCC 2 cut(s) 459, 526
CseI GACGC 2 cut(s) 70, 291
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 3 cut(s) 328, 542, 563
CviAII CATG 1 cut(s) 151
CviJI RGCY 9 cut(s) 106, 160, 218, 261, 276, 367, 444, 461, 528
CviKI_1 RGCY 9 cut(s) 106, 160, 218, 261, 276, 367, 444, 461, 528
CviQI GTAC 3 cut(s) 328, 542, 563
DdeI CTNAG 1 cut(s) 582
DpnI GATC 4 cut(s) 41, 437, 471, 537
DpnII GATC 4 cut(s) 39, 435, 469, 535
DriI GACNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 96, 126
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 2 cut(s) 96, 126
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 106, 160
Eco24I GRGCYC 2 cut(s) 108, 162
Eco53kI GAGCTC 2 cut(s) 106, 160
EcoICRI GAGCTC 2 cut(s) 106, 160
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 56, 544
EcoT38I GRGCYC 2 cut(s) 108, 162
FaeI CATG 1 cut(s) 154
FaiI YATR 5 cut(s) 66, 68, 77, 125, 152
FatI CATG 1 cut(s) 150
FauI CCCGC 4 cut(s) 214, 272, 310, 353
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 4 cut(s) 219, 277, 285, 445
FokI GGATG 2 cut(s) 83, 503
FriOI GRGCYC 2 cut(s) 108, 162
Fsp4HI GCNGC 4 cut(s) 219, 277, 285, 445
FspBI CTAG 1 cut(s) 530
GluI GCNGC 4 cut(s) 219, 277, 285, 445
GsaI CCCAGC 2 cut(s) 265, 417
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 2 cut(s) 461, 528
HapII CCGG 8 cut(s) 29, 45, 89, 113, 180, 333, 347, 353
HgaI GACGC 2 cut(s) 70, 291
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 1 cut(s) 296
HpaII CCGG 8 cut(s) 29, 45, 89, 113, 180, 333, 347, 353
HphI GGTGA 4 cut(s) 34, 322, 497, 526
Hpy166II GTNNAC 3 cut(s) 213, 306, 565
Hpy188I TCNGA 3 cut(s) 39, 295, 474
Hpy188III TCNNGA 2 cut(s) 113, 553
Hpy8I GTNNAC 3 cut(s) 213, 306, 565
Hpy99I CGWCG 4 cut(s) 86, 211, 307, 310
HpyCH4III ACNGT 3 cut(s) 230, 310, 485
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 154, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 276
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 154
Kpn2I TCCGGA 1 cut(s) 112
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 435, 469, 535
LguI GCTCTTC 2 cut(s) 96, 126
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 3 cut(s) 205, 263, 431
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 53
MalI GATC 4 cut(s) 41, 437, 471, 537
MbiI CCGCTC 2 cut(s) 136, 360
MboI GATC 4 cut(s) 39, 435, 469, 535
MboII GAAGA 4 cut(s) 113, 143, 487, 570
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 108, 162
MlyI GAGTC 1 cut(s) 290
MroI TCCGGA 1 cut(s) 112
MroNI GCCGGC 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 8 cut(s) 29, 45, 89, 113, 180, 333, 347, 353
MspR9I CCNGG 3 cut(s) 58, 334, 546
MvaI CCWGG 2 cut(s) 58, 546
MwoI GCNNNNNNNGC 2 cut(s) 267, 276
NaeI GCCGGC 1 cut(s) 348
NciI CCSGG 1 cut(s) 334
NdeII GATC 4 cut(s) 39, 435, 469, 535
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 5 cut(s) 120, 345, 351, 460, 527
NmeAIII GCCGAG 2 cut(s) 278, 487
OliI CACNNNNGTG 1 cut(s) 570
PciSI GCTCTTC 2 cut(s) 96, 126
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 299
PdiI GCCGGC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 4 cut(s) 220, 278, 286, 446
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp124BI GAGCTC 2 cut(s) 108, 162
Psp6I CCWGG 2 cut(s) 56, 544
PspFI CCCAGC 2 cut(s) 261, 413
PspGI CCWGG 2 cut(s) 56, 544
PspN4I GGNNCC 5 cut(s) 120, 345, 351, 460, 527
PspPI GGNCC 2 cut(s) 459, 526
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 3 cut(s) 329, 543, 564
RsaNI GTAC 3 cut(s) 328, 542, 563
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 2 cut(s) 108, 162
SalI GTCGAC 1 cut(s) 304
SapI GCTCTTC 2 cut(s) 96, 126
SatI GCNGC 4 cut(s) 219, 277, 285, 445
Sau3AI GATC 4 cut(s) 39, 435, 469, 535
Sau96I GGNCC 2 cut(s) 459, 526
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 3 cut(s) 58, 334, 546
SduI GDGCHC 2 cut(s) 108, 162
SetI ASST 7 cut(s) 56, 108, 120, 162, 194, 278, 547
SexAI ACCWGGT 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 44
SgrDI CGTCGACG 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 570
SspMI CTAG 1 cut(s) 530
SstI GAGCTC 2 cut(s) 108, 162
StyD4I CCNGG 3 cut(s) 56, 332, 544
TaaI ACNGT 3 cut(s) 230, 310, 485
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 305
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 287
TscAI CASTG 2 cut(s) 190, 248
TseI GCWGC 3 cut(s) 218, 276, 444
TspDTI ATGAA 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 190, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.