Rh6CG514200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017731
Physical Location & Seq
Reverse (-)
67245314 .. 67246292
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG514200.1

Sequence Viewer

Length: 588 bp
ATGGAAGGGAGTTCAAGTTTTCCGCCGGAATATCTGATCACCGGCGAAACGTCCAGGAAATATATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCAGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACGACAACCGGCACTGCCACCTCGGCCGAAAAGCCGTCGTGGACGGCGGCTGGATACGGTGCAACGGGGCAGTGTTTGCGGTGGAACGACTGGGAGAGCGAGAGCTGCGGGGCGGCTGTTTCGGACTCGGCGTCGACGGTGATGGCGGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCGCCGGAGAGCGGGGGGCTGTGCGGTTGTAAATGCTGGAGTAATGGGGGGTTGGTGGTGGTTGCTGAGAACGGGGAGGGAGGAGAGATCAACGGATGTGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGACGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGATGAGTTGGGGCCCAGCGGATCTTGTACCTGGTTTCTGGAATGATGTACACTGTGGTGGGTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.86

Weight (kDa)

4.09

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 346, 352
AccBSI CCGCTC 2 cut(s) 133, 363
AccI GTMKAC 1 cut(s) 308
AclWI GGATC 2 cut(s) 480, 546
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 305, 353
AfaI GTAC 3 cut(s) 332, 546, 567
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 53, 547
AleI CACNNNNGTG 1 cut(s) 573
AluBI AGCT 3 cut(s) 103, 157, 279
AluI AGCT 3 cut(s) 103, 157, 279
Alw21I GWGCWC 2 cut(s) 105, 159
AlwI GGATC 2 cut(s) 480, 546
AoxI GGCC 3 cut(s) 198, 462, 529
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 462, 529, 530
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 4 cut(s) 31, 325, 500, 529
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 2 cut(s) 346, 352
BanII GRGCYC 3 cut(s) 105, 159, 533
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 2 cut(s) 105, 159
BbvI GCAGC 1 cut(s) 266
BccI CCATC 2 cut(s) 310, 475
BceAI ACGGC 2 cut(s) 193, 234
BciT130I CCWGG 2 cut(s) 55, 549
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 337
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 356
BfuI GTATCC 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 3 cut(s) 222, 280, 288
BlsI GCNGC 3 cut(s) 223, 281, 289
Bme1390I CCNGG 3 cut(s) 55, 337, 549
BmeRI GACNNNNNGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 462, 529, 530
BmiI GGNNCC 6 cut(s) 117, 348, 354, 463, 530, 531
BmrFI CCNGG 3 cut(s) 55, 337, 549
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 337
BsaHI GRCGYC 2 cut(s) 305, 353
BsaJI CCNNGG 2 cut(s) 195, 465
BsaXI ACNNNNNCTCC 3 cut(s) 31, 491, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse118I RCCGGY 3 cut(s) 41, 182, 349
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 55, 549
BseDI CCNNGG 2 cut(s) 195, 465
BseGI GGATG 3 cut(s) 73, 452, 499
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 4 cut(s) 447, 482, 512, 515
BseSI GKGCMC 1 cut(s) 533
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 200, 464, 531
BshNI GGYRCC 2 cut(s) 346, 352
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 105, 159
BsiSI CCGG 7 cut(s) 26, 42, 86, 183, 336, 350, 356
BslI CCNNNNNNNGG 1 cut(s) 362
BsnI GGCC 3 cut(s) 200, 464, 531
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 105, 159, 533
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 4 cut(s) 36, 438, 472, 538
BspANI GGCC 3 cut(s) 200, 464, 531
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 6 cut(s) 117, 348, 354, 463, 530, 531
BspPI GGATC 2 cut(s) 480, 546
BspQI GCTCTTC 2 cut(s) 93, 123
BspT107I GGYRCC 2 cut(s) 346, 352
BsrBI CCGCTC 2 cut(s) 133, 363
BsrFI RCCGGY 3 cut(s) 41, 182, 349
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 3 cut(s) 41, 182, 349
BssECI CCNNGG 2 cut(s) 195, 465
BssMI GATC 4 cut(s) 36, 438, 472, 538
BssNI GRCGYC 2 cut(s) 305, 353
Bst2UI CCWGG 2 cut(s) 55, 549
Bst4CI ACNGT 4 cut(s) 233, 313, 488, 572
Bst6I CTCTTC 2 cut(s) 93, 123
BstACI GRCGYC 2 cut(s) 305, 353
BstAPI GCANNNNNTGC 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 417, 585
BstF5I GGATG 3 cut(s) 73, 452, 499
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 4 cut(s) 39, 441, 475, 541
BstMBI GATC 4 cut(s) 36, 438, 472, 538
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 197, 250, 279
BstNI CCWGG 2 cut(s) 55, 549
BstSCI CCNGG 3 cut(s) 53, 335, 547
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BstZI CGGCCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 3 cut(s) 200, 464, 531
BtsCI GGATG 3 cut(s) 73, 452, 499
BtsI GCAGTG 2 cut(s) 186, 251
BtsIMutI CAGTG 3 cut(s) 186, 251, 568
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 3 cut(s) 41, 182, 349
Cfr13I GGNCC 3 cut(s) 462, 529, 530
CseI GACGC 2 cut(s) 67, 294
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 3 cut(s) 331, 545, 566
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 1 cut(s) 148
CviQI GTAC 3 cut(s) 331, 545, 566
DdeI CTNAG 2 cut(s) 417, 585
DinI GGCGCC 1 cut(s) 354
DpnI GATC 4 cut(s) 38, 440, 474, 540
DpnII GATC 4 cut(s) 36, 438, 472, 538
DriI GACNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 198
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 93, 123
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 2 cut(s) 93, 123
EciI GGCGGA 1 cut(s) 12
Ecl136II GAGCTC 2 cut(s) 103, 157
EclXI CGGCCG 1 cut(s) 198
Eco24I GRGCYC 3 cut(s) 105, 159, 533
Eco52I CGGCCG 1 cut(s) 198
Eco53kI GAGCTC 2 cut(s) 103, 157
EcoICRI GAGCTC 2 cut(s) 103, 157
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 53, 547
EcoT38I GRGCYC 3 cut(s) 105, 159, 533
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 63, 65, 74, 122, 149
FatI CATG 1 cut(s) 147
FauI CCCGC 3 cut(s) 275, 313, 356
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 3 cut(s) 222, 280, 288
FokI GGATG 3 cut(s) 80, 459, 506
FriOI GRGCYC 3 cut(s) 105, 159, 533
Fsp4HI GCNGC 3 cut(s) 222, 280, 288
GlaI GCGC 1 cut(s) 354
GluI GCNGC 3 cut(s) 222, 280, 288
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 409
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 200, 464, 531
HapII CCGG 7 cut(s) 26, 42, 86, 183, 336, 350, 356
HgaI GACGC 2 cut(s) 67, 294
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 2 cut(s) 305, 353
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 299
HpaII CCGG 7 cut(s) 26, 42, 86, 183, 336, 350, 356
HphI GGTGA 4 cut(s) 31, 325, 500, 529
Hpy166II GTNNAC 3 cut(s) 216, 309, 568
Hpy188I TCNGA 3 cut(s) 36, 298, 477
Hpy188III TCNNGA 2 cut(s) 110, 556
Hpy8I GTNNAC 3 cut(s) 216, 309, 568
Hpy99I CGWCG 5 cut(s) 83, 178, 214, 310, 313
HpyCH4III ACNGT 4 cut(s) 233, 313, 488, 572
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 151, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 250, 279
HpyF3I CTNAG 2 cut(s) 417, 585
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 305, 353
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 353
KasI GGCGCC 1 cut(s) 352
KroI GCCGGC 1 cut(s) 349
KroNI GCCGGC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 36, 438, 472, 538
LguI GCTCTTC 2 cut(s) 93, 123
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 266
MabI ACCWGGT 1 cut(s) 547
MaeII ACGT 1 cut(s) 50
MalI GATC 4 cut(s) 38, 440, 474, 540
MbiI CCGCTC 2 cut(s) 133, 363
MboI GATC 4 cut(s) 36, 438, 472, 538
MboII GAAGA 4 cut(s) 110, 140, 490, 573
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 3 cut(s) 105, 159, 533
Mly113I GGCGCC 1 cut(s) 353
MlyI GAGTC 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 349
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 7 cut(s) 26, 42, 86, 183, 336, 350, 356
MspR9I CCNGG 3 cut(s) 55, 337, 549
MvaI CCWGG 2 cut(s) 55, 549
MwoI GCNNNNNNNGC 3 cut(s) 197, 250, 279
NaeI GCCGGC 1 cut(s) 351
NarI GGCGCC 1 cut(s) 353
NciI CCSGG 1 cut(s) 337
NdeII GATC 4 cut(s) 36, 438, 472, 538
NgoMIV GCCGGC 1 cut(s) 349
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 6 cut(s) 117, 348, 354, 463, 530, 531
NmeAIII GCCGAG 3 cut(s) 176, 281, 490
OliI CACNNNNGTG 1 cut(s) 573
PciSI GCTCTTC 2 cut(s) 93, 123
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 302
PdiI GCCGGC 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 3 cut(s) 223, 281, 289
PleI GAGTC 1 cut(s) 293
PluTI GGCGCC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 105, 159
Psp6I CCWGG 2 cut(s) 53, 547
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 2 cut(s) 53, 547
PspN4I GGNNCC 6 cut(s) 117, 348, 354, 463, 530, 531
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 3 cut(s) 462, 529, 530
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 3 cut(s) 332, 546, 567
RsaNI GTAC 3 cut(s) 331, 545, 566
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 2 cut(s) 105, 159
SalI GTCGAC 1 cut(s) 307
SapI GCTCTTC 2 cut(s) 93, 123
SatI GCNGC 3 cut(s) 222, 280, 288
Sau3AI GATC 4 cut(s) 36, 438, 472, 538
Sau96I GGNCC 3 cut(s) 462, 529, 530
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 55, 337, 549
SduI GDGCHC 3 cut(s) 105, 159, 533
SetI ASST 7 cut(s) 53, 105, 117, 159, 197, 281, 550
SexAI ACCWGGT 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 41
SgrDI CGTCGACG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 573
SspDI GGCGCC 1 cut(s) 352
SstI GAGCTC 2 cut(s) 105, 159
StyD4I CCNGG 3 cut(s) 53, 335, 547
TaaI ACNGT 4 cut(s) 233, 313, 488, 572
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 308
TatI WGTACW 1 cut(s) 565
TauI GCSGC 2 cut(s) 224, 290
TscAI CASTG 3 cut(s) 193, 251, 575
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 3 cut(s) 193, 251, 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.