Rorug06G0384000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017731
Physical Location & Seq
Forward (+)
52966112 .. 52968169
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384000.1

Sequence Viewer

Length: 546 bp
ATGGAGATGGAGAGCTTCTGCTCCAATGGGTTTGTTCTGAATGAGTTGCTCTGCTCTGTTGGGCAGGTTCTGGTGGCTGAGGCTGCCAAGTCTATTGCTTTCTCTTTCTTGCTGATGGGATCTCTACCTAACAGCGCCTCTGTTTTGCCCAAAGAACCTTACACAGTCACAGGGTTCCCTATCACTGATCTTTATGCTGTGACGAAACCTGGTTCTGAGAACAAAGATGCAAGTGAAACTGAGGACGATGAAGACGGTGATGAGGAGGGTGGTGAGGACCAGGATGATGAAGCAGGAGATGAGGAGGACGCCTCCGGGGACGAAGTTGAGGGCAAAGGAGATCCAGAAGATGTGCCTGCGGCCAATGGTGATGGTGCCAGCGAAGAGGAAGACGATGATGATGAGGAGGAGAAGGAAGACGACGACGATGACGATGACGACGGTGACGACGATGGGGATGAAGAGACGGAAGATGATGAAGAGGATGAGGAAGATGAGGAGGACGAGGATGACATACCCCAGCCACCTGCCAAGAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.57

Weight (kDa)

4.05

Isoelectric Point (pI)

61.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 2 cut(s) 55, 535
AccB1I GGYRCC 1 cut(s) 374
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 127, 335
AcoI YGGCCR 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 309
AjnI CCWGG 2 cut(s) 208, 279
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 127, 335
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 4 cut(s) 269, 284, 380, 455
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 374
BbsI GAAGAC 3 cut(s) 258, 396, 423
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 70
BccI CCATC 3 cut(s) 109, 365, 446
BciT130I CCWGG 2 cut(s) 210, 281
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 2 cut(s) 55, 535
BisI GCNGC 2 cut(s) 84, 360
BlsI GCNGC 2 cut(s) 85, 361
Bme1390I CCNGG 3 cut(s) 210, 281, 316
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 176, 376
BmrFI CCNGG 3 cut(s) 210, 281, 316
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 3 cut(s) 258, 396, 423
BplI GAGNNNNNCTC 2 cut(s) 296, 328
Bpu10I CCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 210, 281
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 4 cut(s) 289, 463, 490, 514
BseMII CTCAG 3 cut(s) 69, 207, 231
BseRI GAGGAG 5 cut(s) 278, 317, 419, 422, 512
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 519
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 458
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 119, 187, 340
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 3 cut(s) 70, 208, 232
BspLI GGNNCC 2 cut(s) 176, 376
BspMI ACCTGC 2 cut(s) 55, 535
BspPI GGATC 2 cut(s) 127, 335
BspT107I GGYRCC 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 119, 187, 340
BssNI GRCGYC 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 210, 281
Bst4CI ACNGT 3 cut(s) 166, 257, 443
Bst6I CTCTTC 3 cut(s) 378, 456, 474
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 357, 379
BstDEI CTNAG 3 cut(s) 78, 216, 240
BstF5I GGATG 4 cut(s) 289, 463, 490, 514
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 122, 190, 343
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 119, 187, 340
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 210, 281
BstSCI CCNGG 3 cut(s) 208, 279, 314
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 3 cut(s) 258, 396, 423
BstX2I RGATCY 2 cut(s) 119, 340
BstYI RGATCY 2 cut(s) 119, 340
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 4 cut(s) 289, 463, 490, 514
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 2 cut(s) 55, 535
Cac8I GCNNGC 2 cut(s) 357, 379
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 208
CviJI RGCY 5 cut(s) 15, 77, 83, 362, 523
CviKI_1 RGCY 5 cut(s) 15, 77, 83, 362, 523
DdeI CTNAG 3 cut(s) 78, 216, 240
DpnI GATC 3 cut(s) 121, 189, 342
DpnII GATC 3 cut(s) 119, 187, 340
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 378, 456, 474
EarI CTCTTC 3 cut(s) 378, 456, 474
Eco47I GGWCC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 208, 279
Esp3I CGTCTC 1 cut(s) 458
FaiI YATR 2 cut(s) 195, 515
FaqI GGGAC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 84, 360
FokI GGATG 4 cut(s) 296, 470, 497, 521
Fsp4HI GCNGC 2 cut(s) 84, 360
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 84, 360
GsaI CCCAGC 1 cut(s) 523
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HpaII CCGG 1 cut(s) 315
HphI GGTGA 4 cut(s) 269, 284, 380, 455
Hpy188I TCNGA 2 cut(s) 39, 217
Hpy188III TCNNGA 1 cut(s) 344
Hpy99I CGWCG 4 cut(s) 425, 428, 443, 452
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 166, 257, 443
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 78, 216, 240
Hsp92I GRCGYC 1 cut(s) 309
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 119, 187, 340
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 217
MabI ACCWGGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 166, 199, 443
MalI GATC 3 cut(s) 121, 189, 342
MboI GATC 3 cut(s) 119, 187, 340
MboII GAAGA 9 cut(s) 263, 359, 395, 401, 428, 473, 482, 491, 503
MflI RGATCY 2 cut(s) 119, 340
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 3 cut(s) 210, 281, 316
MvaI CCWGG 2 cut(s) 210, 281
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 316
NdeII GATC 3 cut(s) 119, 187, 340
NlaIV GGNNCC 2 cut(s) 176, 376
NmuCI GTSAC 3 cut(s) 166, 199, 443
PaqCI CACCTGC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 3 cut(s) 429, 444, 447
PkrI GCNGC 2 cut(s) 85, 361
Psp6I CCWGG 2 cut(s) 208, 279
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 2 cut(s) 208, 279
PspN4I GGNNCC 2 cut(s) 176, 376
PspPI GGNCC 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 119, 340
SatI GCNGC 2 cut(s) 84, 360
Sau3AI GATC 3 cut(s) 119, 187, 340
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 210, 281, 316
SetI ASST 6 cut(s) 17, 69, 130, 160, 211, 529
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 277
SsiI CCGC 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 208, 279, 314
TaaI ACNGT 3 cut(s) 166, 257, 443
TauI GCSGC 1 cut(s) 362
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 3 cut(s) 166, 199, 443
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 3 cut(s) 166, 199, 443
TspDTI ATGAA 4 cut(s) 264, 303, 474, 492
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.