Rh6BG508300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017731
Physical Location & Seq
Reverse (-)
70532467 .. 70533448
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG508300.1

Sequence Viewer

Length: 591 bp
ATGGAAGGGAGTTCAAGTTTTCCGCCGGAATATCTGATCACCGGCGAAACGTCCAGGAAATATATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCCGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACGACGACGACCGGCACTGCCACCTCGGCCGAAAAGCCGTCGTGGACGGCGGCGGGATACGGTGCAACGGGGCAGTGTTTGCGGTGGAACGACTGGGAGAGCGAGAGCTGCGGGGCGGCTGTTTCGGACTCGGCGTCGACGGTGATGGCGGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCGCCGGAGAGCGGGGGGCTGTGCGGTTGTAAATGCTGGAGTAATGGGGGGTTGGTGGTGGTTGCTGAGAACGGGGAGGGAGGAGAGATCAACGGATGTGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGACGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGATGAGTTGGGGCCCAGCGGATCTTGTACCTGGTTTCTGGAATGATGTACACTGTGGTGGGTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

20.93

Weight (kDa)

4.09

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017731)

Species Orthologous Gene IDs
malus_domestica MD08G1061700.v1.1 MD15G1060000.v1.1
prunus_persica Prupe.1G411900_v2.0.a1
pyrus_communis pycom08g05120
rosa_chinensis RchiOBHm_Chr6g0310921
rosa_laevigata RLG00000010450
rosa_roxburghii Rroxscaffold_7G00158170
rosa_rugosa Rorug06G0384000
rosa_samantha Rh6AG497900 Rh6BG508300 Rh6CG514200 Rh6DG500600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 349, 355
AccBSI CCGCTC 2 cut(s) 133, 366
AccI GTMKAC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 109
AclWI GGATC 2 cut(s) 483, 549
AcoI YGGCCR 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 308, 356
AfaI GTAC 3 cut(s) 335, 549, 570
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 53, 550
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 3 cut(s) 103, 157, 282
AluI AGCT 3 cut(s) 103, 157, 282
Alw21I GWGCWC 2 cut(s) 105, 159
AlwI GGATC 2 cut(s) 483, 549
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 3 cut(s) 201, 465, 532
ApaI GGGCCC 1 cut(s) 536
ApeKI GCWGC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 465, 532, 533
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 4 cut(s) 31, 328, 503, 532
BaeGI GKGCMC 1 cut(s) 536
BanI GGYRCC 2 cut(s) 349, 355
BanII GRGCYC 3 cut(s) 105, 159, 536
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 2 cut(s) 105, 159
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 313, 478
BceAI ACGGC 2 cut(s) 196, 237
BciT130I CCWGG 2 cut(s) 55, 552
BciVI GTATCC 1 cut(s) 224
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 359
BfuI GTATCC 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 3 cut(s) 225, 283, 291
BlsI GCNGC 3 cut(s) 226, 284, 292
Bme1390I CCNGG 3 cut(s) 55, 340, 552
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 465, 532, 533
BmiI GGNNCC 6 cut(s) 117, 351, 357, 466, 533, 534
BmrFI CCNGG 3 cut(s) 55, 340, 552
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 308, 356
BsaJI CCNNGG 2 cut(s) 198, 468
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 3 cut(s) 31, 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 3 cut(s) 41, 185, 352
Bse1I ACTGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 2 cut(s) 55, 552
BseDI CCNNGG 2 cut(s) 198, 468
BseGI GGATG 3 cut(s) 73, 455, 502
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 4 cut(s) 450, 485, 515, 518
BseSI GKGCMC 1 cut(s) 536
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 535
Bsh1285I CGRYCG 2 cut(s) 186, 204
BshFI GGCC 3 cut(s) 203, 467, 534
BshNI GGYRCC 2 cut(s) 349, 355
BsiEI CGRYCG 2 cut(s) 186, 204
BsiHKAI GWGCWC 2 cut(s) 105, 159
BsiSI CCGG 8 cut(s) 26, 42, 86, 110, 186, 339, 353, 359
BslI CCNNNNNNNGG 1 cut(s) 365
BsnI GGCC 3 cut(s) 203, 467, 534
Bsp120I GGGCCC 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 105, 159, 536
Bsp13I TCCGGA 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 4 cut(s) 36, 441, 475, 541
BspANI GGCC 3 cut(s) 203, 467, 534
BspCNI CTCAG 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 6 cut(s) 117, 351, 357, 466, 533, 534
BspPI GGATC 2 cut(s) 483, 549
BspQI GCTCTTC 2 cut(s) 93, 123
BspT107I GGYRCC 2 cut(s) 349, 355
BsrBI CCGCTC 2 cut(s) 133, 366
BsrFI RCCGGY 3 cut(s) 41, 185, 352
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 3 cut(s) 41, 185, 352
BssECI CCNNGG 2 cut(s) 198, 468
BssMI GATC 4 cut(s) 36, 441, 475, 541
BssNI GRCGYC 2 cut(s) 308, 356
Bst2UI CCWGG 2 cut(s) 55, 552
Bst4CI ACNGT 4 cut(s) 236, 316, 491, 575
Bst6I CTCTTC 2 cut(s) 93, 123
BstACI GRCGYC 2 cut(s) 308, 356
BstAPI GCANNNNNTGC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 420, 588
BstF5I GGATG 3 cut(s) 73, 455, 502
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 4 cut(s) 39, 444, 478, 544
BstMBI GATC 4 cut(s) 36, 441, 475, 541
BstMCI CGRYCG 2 cut(s) 186, 204
BstMWI GCNNNNNNNGC 3 cut(s) 200, 253, 282
BstNI CCWGG 2 cut(s) 55, 552
BstSCI CCNGG 3 cut(s) 53, 338, 550
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZI CGGCCG 1 cut(s) 201
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 3 cut(s) 203, 467, 534
BtsCI GGATG 3 cut(s) 73, 455, 502
BtsI GCAGTG 2 cut(s) 189, 254
BtsIMutI CAGTG 3 cut(s) 189, 254, 571
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 3 cut(s) 41, 185, 352
Cfr13I GGNCC 3 cut(s) 465, 532, 533
CseI GACGC 2 cut(s) 67, 297
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 3 cut(s) 334, 548, 569
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 1 cut(s) 148
CviJI RGCY 9 cut(s) 103, 157, 203, 211, 282, 293, 373, 467, 534
CviKI_1 RGCY 9 cut(s) 103, 157, 203, 211, 282, 293, 373, 467, 534
CviQI GTAC 3 cut(s) 334, 548, 569
DdeI CTNAG 2 cut(s) 420, 588
DinI GGCGCC 1 cut(s) 357
DpnI GATC 4 cut(s) 38, 443, 477, 543
DpnII GATC 4 cut(s) 36, 441, 475, 541
DriI GACNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 201
EagI CGGCCG 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 93, 123
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 2 cut(s) 93, 123
EciI GGCGGA 1 cut(s) 12
Ecl136II GAGCTC 2 cut(s) 103, 157
EclXI CGGCCG 1 cut(s) 201
Eco24I GRGCYC 3 cut(s) 105, 159, 536
Eco52I CGGCCG 1 cut(s) 201
Eco53kI GAGCTC 2 cut(s) 103, 157
EcoICRI GAGCTC 2 cut(s) 103, 157
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 2 cut(s) 53, 550
EcoT38I GRGCYC 3 cut(s) 105, 159, 536
EgeI GGCGCC 1 cut(s) 357
EheI GGCGCC 1 cut(s) 357
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 63, 65, 74, 122, 149
FatI CATG 1 cut(s) 147
FauI CCCGC 4 cut(s) 220, 278, 316, 359
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 225, 283, 291
FokI GGATG 3 cut(s) 80, 462, 509
FriOI GRGCYC 3 cut(s) 105, 159, 536
Fsp4HI GCNGC 3 cut(s) 225, 283, 291
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 225, 283, 291
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 3 cut(s) 203, 467, 534
HapII CCGG 8 cut(s) 26, 42, 86, 110, 186, 339, 353, 359
HgaI GACGC 2 cut(s) 67, 297
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 2 cut(s) 308, 356
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 302
HpaII CCGG 8 cut(s) 26, 42, 86, 110, 186, 339, 353, 359
HphI GGTGA 4 cut(s) 31, 328, 503, 532
Hpy166II GTNNAC 3 cut(s) 219, 312, 571
Hpy188I TCNGA 3 cut(s) 36, 301, 480
Hpy188III TCNNGA 2 cut(s) 110, 559
Hpy8I GTNNAC 3 cut(s) 219, 312, 571
Hpy99I CGWCG 7 cut(s) 83, 178, 181, 184, 217, 313, 316
HpyCH4III ACNGT 4 cut(s) 236, 316, 491, 575
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 151, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 253, 282
HpyF3I CTNAG 2 cut(s) 420, 588
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 308, 356
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 356
KasI GGCGCC 1 cut(s) 355
Kpn2I TCCGGA 1 cut(s) 109
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 36, 441, 475, 541
LguI GCTCTTC 2 cut(s) 93, 123
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 269
MabI ACCWGGT 1 cut(s) 550
MaeII ACGT 1 cut(s) 50
MalI GATC 4 cut(s) 38, 443, 477, 543
MbiI CCGCTC 2 cut(s) 133, 366
MboI GATC 4 cut(s) 36, 441, 475, 541
MboII GAAGA 4 cut(s) 110, 140, 493, 576
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 3 cut(s) 105, 159, 536
Mly113I GGCGCC 1 cut(s) 356
MlyI GAGTC 1 cut(s) 296
MroI TCCGGA 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 8 cut(s) 26, 42, 86, 110, 186, 339, 353, 359
MspR9I CCNGG 3 cut(s) 55, 340, 552
MvaI CCWGG 2 cut(s) 55, 552
MwoI GCNNNNNNNGC 3 cut(s) 200, 253, 282
NaeI GCCGGC 1 cut(s) 354
NarI GGCGCC 1 cut(s) 356
NciI CCSGG 1 cut(s) 340
NdeII GATC 4 cut(s) 36, 441, 475, 541
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 6 cut(s) 117, 351, 357, 466, 533, 534
NmeAIII GCCGAG 3 cut(s) 179, 284, 493
OliI CACNNNNGTG 1 cut(s) 576
PciSI GCTCTTC 2 cut(s) 93, 123
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 179, 305
PdiI GCCGGC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 3 cut(s) 226, 284, 292
PleI GAGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 2 cut(s) 105, 159
Psp6I CCWGG 2 cut(s) 53, 550
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 53, 550
PspN4I GGNNCC 6 cut(s) 117, 351, 357, 466, 533, 534
PspOMI GGGCCC 1 cut(s) 532
PspPI GGNCC 3 cut(s) 465, 532, 533
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 3 cut(s) 335, 549, 570
RsaNI GTAC 3 cut(s) 334, 548, 569
RseI CAYNNNNRTG 1 cut(s) 576
SacI GAGCTC 2 cut(s) 105, 159
SalI GTCGAC 1 cut(s) 310
SapI GCTCTTC 2 cut(s) 93, 123
SatI GCNGC 3 cut(s) 225, 283, 291
Sau3AI GATC 4 cut(s) 36, 441, 475, 541
Sau96I GGNCC 3 cut(s) 465, 532, 533
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 3 cut(s) 55, 340, 552
SduI GDGCHC 3 cut(s) 105, 159, 536
SetI ASST 7 cut(s) 53, 105, 117, 159, 200, 284, 553
SexAI ACCWGGT 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 357
SgrAI CRCCGGYG 1 cut(s) 41
SgrDI CGTCGACG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 576
SspDI GGCGCC 1 cut(s) 355
SstI GAGCTC 2 cut(s) 105, 159
StyD4I CCNGG 3 cut(s) 53, 338, 550
TaaI ACNGT 4 cut(s) 236, 316, 491, 575
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 311
TatI WGTACW 1 cut(s) 568
TauI GCSGC 2 cut(s) 227, 293
TscAI CASTG 3 cut(s) 196, 254, 578
TseI GCWGC 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 3 cut(s) 196, 254, 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.