Prupe.1G430100_v2.0.a1

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011720
Physical Location & Seq
Forward (+)
36877042 .. 36878954
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G430100.1

Sequence Viewer

Length: 945 bp
ATGCTGCTTTTCGCCTTGCTCTTCTTCTCCCTTGTGGCCCAAGCCTGCTCGGCATCTCAACCAACTACCCACCCACACCAACCACAACAACAAAAAACAGAGCAAGGCACGAAAAACATATTCATTCTGGCCGGGCAGAGCAACATGGCGGGACGGGGGGGCGTCGTAAACGACACTGTCACAGGCATCGCCACCTGGGACGGCGTCGTTCCGCCAGAGTGCCGCCCCAACCCGTCCATCCTCCGGCTCAGCGCTGACCTCACGTGGATCGAGGCACGTGAGCCTCTCCACGCCGACATCGATGCGAAAAAGACCAATGGGATTGGACCCGGCATGGCCTTTGCCAAGGCGATCTTGGTGGCTAACCGCTCTGGCGCCAGTGGCGTGATTGGTTTAGTGCCCTGTGCAGTGGGTGGGACCAACATAACCCATTGGGCACGGGGTTCTTTCTTGTACAATCAGATGATCAGGAGAGCCAAGGCTGCGTTGAACAATGGAGGTACGATCAGAGCACTGCTCTGGTATCAGGGTGAGAGCGATACGGCTAACAGAGAAGACGCCAAGTCTTACAAAAACAGAGTGGAAACTTTCTTTGGGGACGTCCGCTTGGATCTGCAATCTCCGGCTCTCCCAATAATCCAGGTGGCTCTAGCATCTGGGGAAGAAGCAGCTTTCATAGATATAGTTAGGGAAGCCCAACTGGGAGTTGACTTTCTAAACGTGCGAACCGTTGACGCCAAGGGTTTGCCATTGGAACCTGATGGCTTGCACCTCACCACCCCAGCCCAGGTTCGGCTTGGCCAAATGCTGGCTGCTGCATATCTTCAATTTCTGCCAAGCTCCTCCACTACCGGTACCAGTGATGCTCCTAGAACACTTTCTAATTTTGTTTCCAATTTGGTAATTTTTCTGCTTCTGAAAATTTGTAGCATAACCATAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

315

Amino Acids

33.61

Weight (kDa)

7.71

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011720)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53010
fragaria_vesca FvH4_2g33800
malus_domestica MD08G1092200.v1.1 MD15G1076700.v1.1
prunus_persica Prupe.1G430100_v2.0.a1
pyrus_communis pycom08g07490 pycom08g07500 pycom15g07150
rosa_chinensis RchiOBHm_Chr6g0308761
rosa_laevigata RLG00000010622
rosa_multiflora Rmu_sc0000871.1_g000025 Rmu_sc0009346.1_g000012
rosa_roxburghii Rroxscaffold_7G00159960
rosa_rugosa Rorug06G0368100
rosa_samantha Rh6AG479200 Rh6BG488800 Rh6CG494000 Rh6DG479600
rosa_wichuraiana Rw6G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 603
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 2 cut(s) 374, 854
AccB7I CCANNNNNTGG 1 cut(s) 808
AccBSI CCGCTC 1 cut(s) 369
AciI CCGC 5 cut(s) 149, 212, 223, 367, 604
AclWI GGATC 2 cut(s) 275, 618
AcoI YGGCCR 2 cut(s) 129, 799
AcsI RAATTY 1 cut(s) 921
AcvI CACGTG 2 cut(s) 264, 278
AcyI GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
AfaI GTAC 3 cut(s) 455, 502, 856
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 4 cut(s) 243, 787, 792, 808
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 2 cut(s) 490, 827
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 3 cut(s) 194, 639, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 3 cut(s) 671, 840, 942
AluI AGCT 3 cut(s) 671, 840, 942
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 2 cut(s) 275, 618
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 4 cut(s) 36, 129, 336, 799
ApeKI GCWGC 5 cut(s) 4, 482, 668, 812, 815
ApoI RAATTY 1 cut(s) 921
AsiGI ACCGGT 1 cut(s) 851
Asp700I GAANNNNTTC 1 cut(s) 877
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 2 cut(s) 254, 377
AspS9I GGNCC 3 cut(s) 37, 326, 417
AsuC2I CCSGG 2 cut(s) 133, 330
AsuHPI GGTGA 2 cut(s) 542, 766
AvaII GGWCC 2 cut(s) 326, 417
BaeGI GKGCMC 2 cut(s) 402, 439
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 2 cut(s) 374, 854
BbrPI CACGTG 2 cut(s) 264, 278
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 4 cut(s) 469, 680, 799, 802
BccI CCATC 2 cut(s) 245, 755
BceAI ACGGC 2 cut(s) 217, 558
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 3 cut(s) 196, 641, 788
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 2 cut(s) 133, 330
BfaI CTAG 2 cut(s) 650, 870
BfoI RGCGCY 2 cut(s) 255, 378
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 6 cut(s) 5, 223, 483, 669, 813, 816
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 6 cut(s) 6, 224, 484, 670, 814, 817
Bme1390I CCNGG 5 cut(s) 133, 196, 330, 641, 788
Bme18I GGWCC 2 cut(s) 326, 417
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 37, 326, 417
BmiI GGNNCC 5 cut(s) 328, 376, 418, 756, 856
BmrFI CCNGG 5 cut(s) 133, 196, 330, 641, 788
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 5 cut(s) 62, 195, 292, 662, 853
BmuI ACTGGG 1 cut(s) 710
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 501, 533
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 133, 330
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 2 cut(s) 264, 278
BsaHI GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
BsaJI CCNNGG 5 cut(s) 195, 345, 477, 738, 786
BsaWI WCCGGW 1 cut(s) 851
Bsc4I CCNNNNNNNGG 4 cut(s) 243, 787, 792, 808
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 3 cut(s) 378, 705, 858
BseBI CCWGG 3 cut(s) 196, 641, 788
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 5 cut(s) 195, 345, 477, 738, 786
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 243, 787, 792, 808
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 3 cut(s) 378, 705, 858
BseRI GAGGAG 1 cut(s) 832
BseSI GKGCMC 2 cut(s) 402, 439
BseXI GCAGC 4 cut(s) 469, 680, 799, 802
BseYI CCCAGC 1 cut(s) 781
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 4 cut(s) 38, 131, 338, 801
BshNI GGYRCC 2 cut(s) 374, 854
BshTI ACCGGT 1 cut(s) 851
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 5 cut(s) 132, 244, 330, 623, 852
BslFI GGGAC 4 cut(s) 165, 212, 430, 611
BslI CCNNNNNNNGG 4 cut(s) 243, 787, 792, 808
BsmFI GGGAC 4 cut(s) 165, 212, 430, 611
BsnI GGCC 4 cut(s) 38, 131, 338, 801
Bsp1286I GDGCHC 3 cut(s) 402, 439, 514
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 5 cut(s) 267, 351, 465, 504, 610
Bsp1720I GCTNAGC 1 cut(s) 248
BspACI CCGC 5 cut(s) 149, 212, 223, 367, 604
BspANI GGCC 4 cut(s) 38, 131, 338, 801
BspCNI CTCAG 1 cut(s) 261
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 5 cut(s) 328, 376, 418, 756, 856
BspPI GGATC 2 cut(s) 275, 618
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 2 cut(s) 374, 854
BsrBI CCGCTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 3 cut(s) 378, 705, 858
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 5 cut(s) 195, 345, 477, 738, 786
BssMI GATC 5 cut(s) 267, 351, 465, 504, 610
BssNI GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
BssT1I CCWWGG 3 cut(s) 345, 477, 738
Bst2UI CCWGG 3 cut(s) 196, 641, 788
Bst4CI ACNGT 2 cut(s) 178, 730
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 2 cut(s) 264, 278
BstC8I GCNNGC 3 cut(s) 46, 767, 810
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 237
BstH2I RGCGCY 2 cut(s) 255, 378
BstHHI GCGC 2 cut(s) 254, 377
BstKTI GATC 5 cut(s) 270, 354, 468, 507, 613
BstMBI GATC 5 cut(s) 267, 351, 465, 504, 610
BstMWI GCNNNNNNNGC 3 cut(s) 50, 381, 482
BstNI CCWGG 3 cut(s) 196, 641, 788
BstSCI CCNGG 5 cut(s) 131, 194, 328, 639, 786
BstSLI GKGCMC 2 cut(s) 402, 439
BstV1I GCAGC 4 cut(s) 469, 680, 799, 802
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 4 cut(s) 38, 131, 338, 801
BsuTUI ATCGAT 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 2 cut(s) 414, 512
BtsIMutI CAGTG 5 cut(s) 174, 385, 414, 512, 865
Cac8I GCNNGC 3 cut(s) 46, 767, 810
CfoI GCGC 2 cut(s) 254, 377
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 3 cut(s) 37, 326, 417
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 4 cut(s) 151, 193, 566, 743
Csp6I GTAC 3 cut(s) 454, 501, 855
CspAI ACCGGT 1 cut(s) 851
CviAII CATG 2 cut(s) 145, 334
CviQI GTAC 3 cut(s) 454, 501, 855
DdeI CTNAG 1 cut(s) 248
DinI GGCGCC 1 cut(s) 376
DpnI GATC 5 cut(s) 269, 353, 467, 506, 612
DpnII GATC 5 cut(s) 267, 351, 465, 504, 610
DriI GACNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 2 cut(s) 129, 799
Eam1104I CTCTTC 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 3 cut(s) 345, 477, 738
Eco47I GGWCC 2 cut(s) 326, 417
Eco47III AGCGCT 1 cut(s) 253
Eco72I CACGTG 2 cut(s) 264, 278
EcoRII CCWGG 3 cut(s) 194, 639, 786
EcoT14I CCWWGG 3 cut(s) 345, 477, 738
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 345, 477, 738
FaeI CATG 2 cut(s) 148, 337
FaiI YATR 9 cut(s) 119, 146, 335, 425, 677, 683, 820, 932, 938
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 4 cut(s) 165, 212, 430, 611
FatI CATG 2 cut(s) 144, 333
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 6 cut(s) 5, 223, 483, 669, 813, 816
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 6 cut(s) 5, 223, 483, 669, 813, 816
FspBI CTAG 2 cut(s) 650, 870
GlaI GCGC 2 cut(s) 253, 376
GluI GCNGC 6 cut(s) 5, 223, 483, 669, 813, 816
GsaI CCCAGC 1 cut(s) 785
HaeII RGCGCY 2 cut(s) 255, 378
HaeIII GGCC 4 cut(s) 38, 131, 338, 801
HapII CCGG 5 cut(s) 132, 244, 330, 623, 852
HgaI GACGC 4 cut(s) 151, 193, 566, 743
HhaI GCGC 2 cut(s) 254, 377
Hin1I GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
Hin1II CATG 2 cut(s) 148, 337
Hin6I GCGC 2 cut(s) 252, 375
HinP1I GCGC 2 cut(s) 252, 375
HincII GTYRAC 2 cut(s) 709, 733
HindII GTYRAC 2 cut(s) 709, 733
HpaII CCGG 5 cut(s) 132, 244, 330, 623, 852
HphI GGTGA 2 cut(s) 542, 766
Hpy166II GTNNAC 3 cut(s) 169, 709, 733
Hpy188I TCNGA 3 cut(s) 462, 509, 918
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 3 cut(s) 169, 709, 733
Hpy99I CGWCG 2 cut(s) 167, 209
HpyCH4III ACNGT 2 cut(s) 178, 730
HpyCH4IV ACGT 4 cut(s) 263, 277, 600, 720
HpyCH4V TGCA 4 cut(s) 407, 616, 769, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 381, 482
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 4 cut(s) 263, 277, 600, 720
Hsp92I GRCGYC 6 cut(s) 162, 204, 375, 558, 600, 735
Hsp92II CATG 2 cut(s) 148, 337
HspAI GCGC 2 cut(s) 252, 375
KasI GGCGCC 1 cut(s) 374
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 5 cut(s) 267, 351, 465, 504, 610
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 845, 871
Lsp1109I GCAGC 4 cut(s) 469, 680, 799, 802
LweI GCATC 5 cut(s) 62, 195, 292, 662, 853
MaeI CTAG 2 cut(s) 650, 870
MaeII ACGT 4 cut(s) 263, 277, 600, 720
MaeIII GTNAC 1 cut(s) 178
MalI GATC 5 cut(s) 269, 353, 467, 506, 612
MbiI CCGCTC 1 cut(s) 369
MboI GATC 5 cut(s) 267, 351, 465, 504, 610
MboII GAAGA 5 cut(s) 13, 16, 566, 674, 815
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 3 cut(s) 402, 439, 514
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 5 cut(s) 827, 883, 895, 903, 921
MluNI TGGCCA 1 cut(s) 801
Mly113I GGCGCC 1 cut(s) 375
MnlI CCTC 7 cut(s) 251, 265, 269, 294, 491, 782, 853
Mox20I TGGCCA 1 cut(s) 801
MroXI GAANNNNTTC 1 cut(s) 877
MscI TGGCCA 1 cut(s) 801
Msp20I TGGCCA 1 cut(s) 801
MspI CCGG 5 cut(s) 132, 244, 330, 623, 852
MspR9I CCNGG 5 cut(s) 133, 196, 330, 641, 788
MvaI CCWGG 3 cut(s) 196, 641, 788
MwoI GCNNNNNNNGC 3 cut(s) 50, 381, 482
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 2 cut(s) 133, 330
NdeII GATC 5 cut(s) 267, 351, 465, 504, 610
NlaIII CATG 2 cut(s) 148, 337
NlaIV GGNNCC 5 cut(s) 328, 376, 418, 756, 856
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 726
PdmI GAANNNNTTC 1 cut(s) 877
PflFI GACNNNGTC 2 cut(s) 176, 203
PflMI CCANNNNNTGG 1 cut(s) 808
PinAI ACCGGT 1 cut(s) 851
PkrI GCNGC 6 cut(s) 6, 224, 484, 670, 814, 817
PluTI GGCGCC 1 cut(s) 378
PmaCI CACGTG 2 cut(s) 264, 278
PmlI CACGTG 2 cut(s) 264, 278
Ppu21I YACGTR 2 cut(s) 264, 278
Psp6I CCWGG 3 cut(s) 194, 639, 786
PspCI CACGTG 2 cut(s) 264, 278
PspFI CCCAGC 1 cut(s) 781
PspGI CCWGG 3 cut(s) 194, 639, 786
PspN4I GGNNCC 5 cut(s) 328, 376, 418, 756, 856
PspPI GGNCC 3 cut(s) 37, 326, 417
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 2 cut(s) 176, 203
RsaI GTAC 3 cut(s) 455, 502, 856
RsaNI GTAC 3 cut(s) 454, 501, 855
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 6 cut(s) 5, 223, 483, 669, 813, 816
Sau3AI GATC 5 cut(s) 267, 351, 465, 504, 610
Sau96I GGNCC 3 cut(s) 37, 326, 417
ScrFI CCNGG 5 cut(s) 133, 196, 330, 641, 788
SduI GDGCHC 3 cut(s) 402, 439, 514
SfaNI GCATC 5 cut(s) 62, 195, 292, 662, 853
SfoI GGCGCC 1 cut(s) 376
SinI GGWCC 2 cut(s) 326, 417
Sse9I AATT 5 cut(s) 827, 883, 895, 903, 921
SsiI CCGC 5 cut(s) 149, 212, 223, 367, 604
SspDI GGCGCC 1 cut(s) 374
SspMI CTAG 2 cut(s) 650, 870
StyD4I CCNGG 5 cut(s) 131, 194, 328, 639, 786
StyI CCWWGG 3 cut(s) 345, 477, 738
TaaI ACNGT 2 cut(s) 178, 730
TaiI ACGT 4 cut(s) 266, 280, 603, 723
TaqI TCGA 2 cut(s) 270, 300
TasI AATT 5 cut(s) 827, 883, 895, 903, 921
TatI WGTACW 1 cut(s) 453
TauI GCSGC 1 cut(s) 225
TscAI CASTG 5 cut(s) 181, 385, 414, 519, 865
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 5 cut(s) 4, 482, 668, 812, 815
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 112, 664
TspRI CASTG 5 cut(s) 181, 385, 414, 519, 865
Tth111I GACNNNGTC 2 cut(s) 176, 203
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 326, 417
XapI RAATTY 1 cut(s) 921
XcmI CCANNNNNNNNNTGG 2 cut(s) 352, 794
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 2 cut(s) 650, 870
ZraI GACGTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.