Rmu_sc0009346.1_g000012

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009346.1
OG0011720
Physical Location & Seq
Reverse (-)
37855 .. 38382
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009346.1_g000012.1.cds

Sequence Viewer

Length: 528 bp
atggccggccgcggaggcgttgtaaacgacactctcaccggaatcaccacctgggacggggtcgttcctccagagtgcctccccaacaaatccatcttccgactcagcgcaaacctcacgtgggttgaagcccgcgagcctctccacgctgatatcgacgtggagaagacgaatgggatcggacccgggatgccattcgccagtgcgatccttgccaatcgtgctagcagtattggtgcgattggtttagtcccgtgcgcaatcggcgggactaacctaagccaatgggaacgagggtctttcctatacagacagatgattgggagagccaaggcggctttgttaaaggtgaatgatagtggcgcctcaatcaggggactactctggtatcaaggtgagagcgatacgactagtatagaagacgcccgatcttacaaagccagattggaaaccttctttggagacctccggttggatctgcaatttcctatgcttccaataatccaggtactgcaatctttttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

175

Amino Acids

18.93

Weight (kDa)

5.83

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011720)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53010
fragaria_vesca FvH4_2g33800
malus_domestica MD08G1092200.v1.1 MD15G1076700.v1.1
prunus_persica Prupe.1G430100_v2.0.a1
pyrus_communis pycom08g07490 pycom08g07500 pycom15g07150
rosa_chinensis RchiOBHm_Chr6g0308761
rosa_laevigata RLG00000010622
rosa_multiflora Rmu_sc0000871.1_g000025 Rmu_sc0009346.1_g000012
rosa_roxburghii Rroxscaffold_7G00159960
rosa_rugosa Rorug06G0368100
rosa_samantha Rh6AG479200 Rh6BG488800 Rh6CG494000 Rh6DG479600
rosa_wichuraiana Rw6G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 2 cut(s) 12, 135
AciI CCGC 5 cut(s) 10, 12, 133, 267, 335
AclWI GGATC 3 cut(s) 185, 202, 483
AcoI YGGCCR 2 cut(s) 3, 7
AcvI CACGTG 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 363, 423
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 4 cut(s) 57, 121, 372, 472
AgsI TTSAA 1 cut(s) 128
AhlI ACTAGT 1 cut(s) 410
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 50, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 3 cut(s) 185, 202, 483
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 2 cut(s) 3, 7
AspLEI GCGC 3 cut(s) 110, 260, 365
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 2 cut(s) 186, 187
AsuHPI GGTGA 4 cut(s) 28, 37, 361, 407
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 173, 426
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 52, 506
BcnI CCSGG 2 cut(s) 186, 187
BcoDI GTCTC 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 2 cut(s) 225, 411
BfoI RGCGCY 1 cut(s) 366
BglI GCCNNNNNGGC 2 cut(s) 15, 335
BisI GCNGC 2 cut(s) 10, 336
BlsI GCNGC 2 cut(s) 11, 337
Bme1390I CCNGG 4 cut(s) 52, 186, 187, 506
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 184, 364
BmrFI CCNGG 4 cut(s) 52, 186, 187, 506
BmsI GCATC 1 cut(s) 180
BmtI GCTAGC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 173, 426
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 186, 187
BsaAI YACGTR 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 363, 423
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 10, 51, 185, 330
BsaWI WCCGGW 2 cut(s) 38, 468
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 121, 372, 472
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 52, 506
BseDI CCNNGG 4 cut(s) 10, 51, 185, 330
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 57, 121, 372, 472
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 201
BseX3I CGGCCG 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 12, 135
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 5, 9
BshNI GGYRCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 4 cut(s) 6, 39, 186, 469
BslFI GGGAC 4 cut(s) 68, 236, 283, 390
BslI CCNNNNNNNGG 4 cut(s) 57, 121, 372, 472
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 4 cut(s) 68, 236, 283, 390
BsnI GGCC 2 cut(s) 5, 9
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 4 cut(s) 177, 207, 428, 475
BspACI CCGC 5 cut(s) 10, 12, 133, 267, 335
BspANI GGCC 2 cut(s) 5, 9
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 12, 135
BspLI GGNNCC 2 cut(s) 184, 364
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 3 cut(s) 185, 202, 483
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 10, 51, 185, 330
BssMI GATC 4 cut(s) 177, 207, 428, 475
BssNI GRCGYC 2 cut(s) 363, 423
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 52, 506
BstACI GRCGYC 2 cut(s) 363, 423
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 7, 133, 137, 226
BstDEI CTNAG 2 cut(s) 104, 278
BstDSI CCRYGG 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 2 cut(s) 12, 135
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 3 cut(s) 110, 260, 365
BstKTI GATC 4 cut(s) 180, 210, 431, 478
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 4 cut(s) 177, 207, 428, 475
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 5 cut(s) 15, 212, 221, 264, 335
BstNI CCWGG 2 cut(s) 52, 506
BstSCI CCNGG 4 cut(s) 50, 184, 185, 504
BstUI CGCG 2 cut(s) 12, 135
BstV2I GAAGAC 2 cut(s) 173, 426
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 5, 9
BtgI CCRYGG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 7, 133, 137, 226
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 3 cut(s) 110, 260, 365
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 13
Cfr9I CCCGGG 1 cut(s) 185
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 509
CviJI RGCY 8 cut(s) 5, 9, 131, 139, 282, 329, 338, 440
CviKI_1 RGCY 8 cut(s) 5, 9, 131, 139, 282, 329, 338, 440
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 104, 278
DinI GGCGCC 1 cut(s) 364
DpnI GATC 4 cut(s) 179, 209, 430, 477
DpnII GATC 4 cut(s) 177, 207, 428, 475
EaeI YGGCCR 2 cut(s) 3, 7
EagI CGGCCG 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 182
Eco52I CGGCCG 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 50, 504
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 330
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 330
FaiI YATR 3 cut(s) 307, 416, 491
FaqI GGGAC 4 cut(s) 68, 236, 283, 390
FauI CCCGC 2 cut(s) 140, 260
Fnu4HI GCNGC 2 cut(s) 10, 336
FokI GGATG 1 cut(s) 202
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 10, 336
FspBI CTAG 2 cut(s) 225, 411
FspI TGCGCA 1 cut(s) 259
GlaI GCGC 3 cut(s) 109, 259, 364
GluI GCNGC 2 cut(s) 10, 336
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 2 cut(s) 5, 9
HapII CCGG 4 cut(s) 6, 39, 186, 469
HgaI GACGC 1 cut(s) 431
HhaI GCGC 3 cut(s) 110, 260, 365
Hin1I GRCGYC 2 cut(s) 363, 423
Hin6I GCGC 3 cut(s) 108, 258, 363
HinP1I GCGC 3 cut(s) 108, 258, 363
HinfI GANTC 2 cut(s) 42, 102
HpaII CCGG 4 cut(s) 6, 39, 186, 469
HphI GGTGA 4 cut(s) 28, 37, 361, 407
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 101, 182
Hpy188III TCNNGA 2 cut(s) 71, 525
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 463
HpyCH4IV ACGT 2 cut(s) 119, 159
HpyCH4V TGCA 2 cut(s) 481, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 212, 221, 264, 335
HpyF3I CTNAG 2 cut(s) 104, 278
HpySE526I ACGT 2 cut(s) 119, 159
Hsp92I GRCGYC 2 cut(s) 363, 423
HspAI GCGC 3 cut(s) 108, 258, 363
KasI GGCGCC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 4 cut(s) 177, 207, 428, 475
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 225, 411
MaeII ACGT 2 cut(s) 119, 159
MalI GATC 4 cut(s) 179, 209, 430, 477
MboI GATC 4 cut(s) 177, 207, 428, 475
MboII GAAGA 3 cut(s) 88, 178, 431
MflI RGATCY 1 cut(s) 475
MluCI AATT 1 cut(s) 482
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 124, 453
MnlI CCTC 8 cut(s) 8, 78, 89, 125, 150, 287, 376, 476
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 4 cut(s) 6, 39, 186, 469
MspR9I CCNGG 4 cut(s) 52, 186, 187, 506
MvaI CCWGG 2 cut(s) 52, 506
MvnI CGCG 2 cut(s) 12, 135
MwoI GCNNNNNNNGC 5 cut(s) 15, 212, 221, 264, 335
NaeI GCCGGC 1 cut(s) 7
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 2 cut(s) 186, 187
NdeII GATC 4 cut(s) 177, 207, 428, 475
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 184, 364
NsbI TGCGCA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 11, 337
PleI GAGTC 1 cut(s) 96
PluTI GGCGCC 1 cut(s) 366
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 50, 504
PspCI CACGTG 1 cut(s) 120
PspGI CCWGG 2 cut(s) 50, 504
PspN4I GGNNCC 2 cut(s) 184, 364
PspPI GGNCC 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 59
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SacII CCGCGG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 10, 336
Sau3AI GATC 4 cut(s) 177, 207, 428, 475
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 4 cut(s) 52, 186, 187, 506
SfaNI GCATC 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 364
Sfr303I CCGCGG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 1 cut(s) 182
SmaI CCCGGG 1 cut(s) 187
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 1 cut(s) 482
SsiI CCGC 5 cut(s) 10, 12, 133, 267, 335
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 2 cut(s) 225, 411
StyD4I CCNGG 4 cut(s) 50, 184, 185, 504
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 2 cut(s) 122, 162
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 482
TauI GCSGC 2 cut(s) 12, 338
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 1 cut(s) 208
TspMI CCCGGG 1 cut(s) 185
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 182
XagI CCTNNNNNAGG 1 cut(s) 370
XmaI CCCGGG 1 cut(s) 185
XspI CTAG 2 cut(s) 225, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.