Prupe.1G458900_v2.0.a1

Sarcosine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013564
Physical Location & Seq
Forward (+)
38428096 .. 38429891
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G458900.1

Sequence Viewer

Length: 1227 bp
ATGGAATATTCCGCGGATGAATTCGACGTCATCGTGATCGGAGCCGGCATCATGGGTAGCTCCACCGCCTACCAGACGGCCAAGCGTGACCAGAAGACCCTCCTCCTCGAGCAATTTGACTTCCTCCACCACCACGGCTCCTCCCATGGCGAGTCCCGGACGATCCGCGCGACCTACCCGGAAGACTACTACACGCCATTGGTTCTCGAGTCCTACAAGCTCTGGCAGGAAGCCGAGTCCGAGATCGGCTACAATGTCTACTTCAAAGCTCACCATTTGGACATGGCCCCGGCAAACAACAAAGTTCTGCATGCCATTGTTGAGAGCTGTGGTAAAAATTCGGTCCCTTTTCGGGTCATGAACCGGGACCAGCTGGATCGGGAGTTCTCGGGTCGGGTTCGGATTCCGGAGGATTGGGTGGCCGTGGCGACGGAGCATGGTGGGGTTATTAAACCCACCAAGGCTGTGTCGATGTTTCAAACACTTGCTCTGCAGAATGGTGCCGTTTTGAGGGACAATATGGAGGTGAAGGGTGTGGAGAGAGATGGGGTGAGAGGAGGGGTTTGGGTGTGCACAGAAAATGGAGAGAGGTTTTGGGGGAAGAAGTGTGTGGTGACCGTTGGGGCTTGGACTACAAAGTTAGTTAAAACGGTTGGTGGGATTGAGCTGCCTATGCAGCCATTGGAGACCGCTGTTTGTTATTGGAGGATTAAGGAGGGGCATGAGGGTGGTTTTGCCATTGGTGGTGACTTTCCAACCTTTGCTAGCTATGGGGACAACTACATTTATGGGACACCATCTTTGGAGTACCCCGGTTTGATCAAGGTTGCCGTGCATGGCGGGTGCCCATGTGACCCAGATAAGAGGCCGTGGGGACCCGGTAACCCGCTGGCTCCGAACACGCTGACTCCGTTGAAGGAGTGGATTGAGGGGAGGTTCTCCGGTATGGTTGACTCCGGTGGGCCGGTGGCCACTCAGACTCAGCTGTGTATGTACTCCATGACCCCGGATGAGGACTTTGTGATCGATTTCTTGGGTGGGGAGTTTGGGAAGGATGTGGTGGTGGGTGGCGGGTTTTCGGATCACGGGTTCAAGCTGTCTCCGGTGGTGGGGAGGATATTGGCTGACCTTGCACTTAGTGGGGAGGCTCAAGGAGTGGAGCTAAAGCACTTTAGGATAGCAAGGTTTCAAGAGAATCCTAAAGGCAATGTTAAAGACTTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008115 GO:0008150 GO:0008152 GO:0016491 GO:0016645 GO:0016647 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00260 ko00310 ko01100 ko04146 map00260 map00310 map01100 map04146
Pfam Domains
Protein Families
DAO

Protein Analysis

409

Amino Acids

44.96

Weight (kDa)

5.51

Isoelectric Point (pI)

23.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013564)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24580
fragaria_vesca FvH4_2g36660
malus_domestica MD08G1126500.v1.1 MD15G1106400.v1.1
prunus_persica Prupe.1G458600_v2.0.a1 Prupe.1G458800_v2.0.a1 Prupe.1G458900_v2.0.a1
pyrus_communis pycom08g10570 pycom15g09710
rosa_chinensis RchiOBHm_Chr6g0305131
rosa_laevigata RLG00000010916
rosa_multiflora Rmu_sc0000061.1_g000020
rosa_rugosa Rorug06G0337900
rosa_samantha Rh6AG449500 Rh6BG451800 Rh6CG463000 Rh6DG450000
rosa_wichuraiana Rw6G039150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 2 cut(s) 500, 843
AccI GTMKAC 1 cut(s) 258
AccII CGCG 3 cut(s) 14, 168, 170
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 8 cut(s) 12, 14, 66, 166, 690, 840, 887, 1071
AclWI GGATC 3 cut(s) 157, 384, 1089
AcoI YGGCCR 3 cut(s) 78, 420, 969
AcsI RAATTY 2 cut(s) 20, 337
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 1139
AfaI GTAC 2 cut(s) 809, 995
AfiI CCNNNNNNNGG 4 cut(s) 352, 510, 1012, 1109
AgsI TTSAA 5 cut(s) 265, 479, 916, 1093, 1190
AloI GAACNNNNNNTCC 4 cut(s) 368, 400, 1073, 1105
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 2 cut(s) 680, 1104
Alw44I GTGCAC 1 cut(s) 571
AlwI GGATC 3 cut(s) 157, 384, 1089
Ama87I CYCGRG 3 cut(s) 107, 206, 388
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 6 cut(s) 78, 285, 420, 866, 962, 969
ApaLI GTGCAC 1 cut(s) 571
ApeKI GCWGC 2 cut(s) 667, 676
ApoI RAATTY 2 cut(s) 20, 337
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 5 cut(s) 286, 343, 367, 875, 962
AsuC2I CCSGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
AsuHPI GGTGA 5 cut(s) 263, 538, 562, 625, 758
AsuNHI GCTAGC 1 cut(s) 764
AvaI CYCGRG 3 cut(s) 107, 206, 388
AvaII GGWCC 3 cut(s) 343, 367, 875
BaeGI GKGCMC 2 cut(s) 575, 848
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 2 cut(s) 500, 843
BbsI GAAGAC 2 cut(s) 101, 189
Bbv12I GWGCWC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 654, 688
BccI CCATC 2 cut(s) 539, 805
BceAI ACGGC 6 cut(s) 93, 151, 407, 488, 815, 853
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
BcoDI GTCTC 2 cut(s) 680, 1104
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 2 cut(s) 491, 1223
BisI GCNGC 2 cut(s) 668, 677
BlsI GCNGC 2 cut(s) 669, 678
Bme1390I CCNGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
Bme18I GGWCC 3 cut(s) 343, 367, 875
BmeT110I CYCGRG 3 cut(s) 107, 206, 388
BmgT120I GGNCC 5 cut(s) 286, 343, 367, 875, 962
BmrFI CCNGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 768
BpiI GAAGAC 2 cut(s) 101, 189
BpuEI CTTGAG 1 cut(s) 1134
BpuMI CCSGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
Bsa29I ATCGAT 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 9 cut(s) 12, 133, 145, 288, 423, 459, 811, 869, 1005
BsaWI WCCGGW 4 cut(s) 406, 941, 956, 1102
BsaXI ACNNNNNCTCC 6 cut(s) 122, 125, 152, 155, 892, 922
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 510, 1012, 1109
Bse118I RCCGGY 2 cut(s) 44, 964
Bse3DI GCAATG 1 cut(s) 1213
BseAI TCCGGA 1 cut(s) 406
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 9 cut(s) 12, 133, 145, 288, 423, 459, 811, 869, 1005
BseGI GGATG 3 cut(s) 22, 1015, 1060
BseLI CCNNNNNNNGG 4 cut(s) 352, 510, 1012, 1109
BseMI GCAATG 1 cut(s) 1213
BseMII CTCAG 2 cut(s) 989, 995
BseRI GAGGAG 4 cut(s) 92, 95, 130, 570
BseSI GKGCMC 2 cut(s) 575, 848
BseXI GCAGC 2 cut(s) 654, 688
Bsh1236I CGCG 3 cut(s) 14, 168, 170
BshFI GGCC 6 cut(s) 80, 287, 422, 868, 964, 971
BshNI GGYRCC 2 cut(s) 500, 843
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 575
BsiHKCI CYCGRG 3 cut(s) 107, 206, 388
BslFI GGGAC 7 cut(s) 139, 329, 380, 527, 788, 805, 888
BslI CCNNNNNNNGG 4 cut(s) 352, 510, 1012, 1109
BsmAI GTCTC 2 cut(s) 680, 1104
BsmFI GGGAC 7 cut(s) 139, 329, 380, 527, 788, 805, 888
BsnI GGCC 6 cut(s) 80, 287, 422, 868, 964, 971
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 3 cut(s) 107, 206, 388
Bsp1286I GDGCHC 2 cut(s) 575, 848
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 8 cut(s) 12, 14, 66, 166, 690, 840, 887, 1071
BspANI GGCC 6 cut(s) 80, 287, 422, 868, 964, 971
BspCNI CTCAG 2 cut(s) 988, 994
BspDI ATCGAT 1 cut(s) 1026
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 3 cut(s) 14, 168, 170
BspHI TCATGA 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 495
BspOI GCTAGC 1 cut(s) 768
BspPI GGATC 3 cut(s) 157, 384, 1089
BspT107I GGYRCC 2 cut(s) 500, 843
BspTNI GGTCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 1213
BsrFI RCCGGY 2 cut(s) 44, 964
BssAI RCCGGY 2 cut(s) 44, 964
BssECI CCNNGG 9 cut(s) 12, 133, 145, 288, 423, 459, 811, 869, 1005
BssMI GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 145, 459
Bst4CI ACNGT 2 cut(s) 619, 652
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 46, 312, 766, 891
BstDEI CTNAG 3 cut(s) 975, 981, 1136
BstDSI CCRYGG 5 cut(s) 12, 133, 145, 423, 869
BstEII GGTNACC 2 cut(s) 613, 881
BstF5I GGATG 3 cut(s) 22, 1015, 1060
BstFNI CGCG 3 cut(s) 14, 168, 170
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 7 cut(s) 39, 165, 246, 379, 822, 1026, 1084
BstMAI GTCTC 2 cut(s) 680, 1104
BstMBI GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 673, 676, 1130
BstNSI RCATGY 1 cut(s) 314
BstPI GGTNACC 2 cut(s) 613, 881
BstSCI CCNGG 7 cut(s) 155, 177, 288, 363, 811, 877, 1005
BstSFI CTRYAG 2 cut(s) 491, 1223
BstSLI GKGCMC 2 cut(s) 575, 848
BstUI CGCG 3 cut(s) 14, 168, 170
BstV1I GCAGC 2 cut(s) 654, 688
BstV2I GAAGAC 2 cut(s) 101, 189
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 6 cut(s) 80, 287, 422, 868, 964, 971
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 5 cut(s) 12, 133, 145, 423, 869
BtsCI GGATG 3 cut(s) 22, 1015, 1060
Cac8I GCNNGC 4 cut(s) 46, 312, 766, 891
CciI TCATGA 1 cut(s) 357
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 2 cut(s) 44, 964
Cfr13I GGNCC 5 cut(s) 286, 343, 367, 875, 962
Cfr42I CCGCGG 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 1026
Csp6I GTAC 2 cut(s) 808, 994
CviQI GTAC 2 cut(s) 808, 994
DdeI CTNAG 3 cut(s) 975, 981, 1136
DpnI GATC 7 cut(s) 38, 164, 245, 378, 821, 1025, 1083
DpnII GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
DraIII CACNNNGTG 1 cut(s) 1139
EaeI YGGCCR 3 cut(s) 78, 420, 969
Eco130I CCWWGG 2 cut(s) 145, 459
Eco31I GGTCTC 1 cut(s) 680
Eco47I GGWCC 3 cut(s) 343, 367, 875
Eco88I CYCGRG 3 cut(s) 107, 206, 388
Eco91I GGTNACC 2 cut(s) 613, 881
EcoO109I RGGNCCY 1 cut(s) 875
EcoO65I GGTNACC 2 cut(s) 613, 881
EcoRI GAATTC 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 145, 459
ErhI CCWWGG 2 cut(s) 145, 459
FaqI GGGAC 7 cut(s) 139, 329, 380, 527, 788, 805, 888
FauI CCCGC 3 cut(s) 833, 894, 1064
FbaI TGATCA 1 cut(s) 819
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 668, 677
FokI GGATG 3 cut(s) 29, 1022, 1067
Fsp4HI GCNGC 2 cut(s) 668, 677
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 668, 677
HaeIII GGCC 6 cut(s) 80, 287, 422, 868, 964, 971
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 27
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HinfI GANTC 8 cut(s) 152, 209, 236, 403, 907, 953, 979, 1195
HphI GGTGA 5 cut(s) 263, 538, 562, 625, 758
Hpy166II GTNNAC 3 cut(s) 259, 573, 952
Hpy188I TCNGA 6 cut(s) 41, 241, 402, 897, 978, 1081
Hpy188III TCNNGA 6 cut(s) 34, 206, 358, 380, 407, 1190
Hpy8I GTNNAC 3 cut(s) 259, 573, 952
Hpy99I CGWCG 2 cut(s) 29, 433
HpyAV CCTTC 3 cut(s) 523, 910, 1045
HpyCH4III ACNGT 2 cut(s) 619, 652
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 6 cut(s) 310, 493, 573, 676, 835, 1133
HpyF10VI GCNNNNNNNGC 3 cut(s) 673, 676, 1130
HpyF3I CTNAG 3 cut(s) 975, 981, 1136
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
HspAI GCGC 1 cut(s) 168
KflI GGGWCCC 1 cut(s) 875
Kpn2I TCCGGA 1 cut(s) 406
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 819
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
LmnI GCTCC 6 cut(s) 41, 65, 143, 433, 898, 1159
Lsp1109I GCAGC 2 cut(s) 654, 688
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 5 cut(s) 86, 613, 746, 851, 881
MalI GATC 7 cut(s) 38, 164, 245, 378, 821, 1025, 1083
MboI GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
MboII GAAGA 3 cut(s) 106, 194, 613
MhlI GDGCHC 2 cut(s) 575, 848
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 3 cut(s) 20, 113, 337
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 6 cut(s) 161, 218, 245, 901, 947, 973
MmeI TCCRAC 1 cut(s) 779
Mox20I TGGCCA 1 cut(s) 971
MroI TCCGGA 1 cut(s) 406
MroNI GCCGGC 1 cut(s) 44
MscI TGGCCA 1 cut(s) 971
MseI TTAA 4 cut(s) 450, 645, 711, 1212
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 5 cut(s) 14, 373, 692, 889, 985
MspR9I CCNGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
MvnI CGCG 3 cut(s) 14, 168, 170
MwoI GCNNNNNNNGC 3 cut(s) 673, 676, 1130
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
NcoI CCATGG 1 cut(s) 145
NdeII GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
NgoMIV GCCGGC 1 cut(s) 44
NheI GCTAGC 1 cut(s) 764
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 4 cut(s) 86, 613, 746, 851
NspI RCATGY 1 cut(s) 314
PaeI GCATGC 1 cut(s) 314
PaeR7I CTCGAG 2 cut(s) 107, 206
PagI TCATGA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 167, 908
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 403, 1195
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 2 cut(s) 669, 678
PleI GAGTC 6 cut(s) 160, 217, 244, 901, 947, 973
PpsI GAGTC 6 cut(s) 160, 217, 244, 901, 947, 973
PpuMI RGGWCCY 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 875
PspEI GGTNACC 2 cut(s) 613, 881
PspPI GGNCC 5 cut(s) 286, 343, 367, 875, 962
PspPPI RGGWCCY 1 cut(s) 875
PspXI VCTCGAGB 1 cut(s) 107
PstI CTGCAG 1 cut(s) 495
PvuII CAGCTG 2 cut(s) 373, 985
RsaI GTAC 2 cut(s) 809, 995
RsaNI GTAC 2 cut(s) 808, 994
RseI CAYNNNNRTG 1 cut(s) 726
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 450, 645, 711, 1212
SatI GCNGC 2 cut(s) 668, 677
Sau3AI GATC 7 cut(s) 36, 162, 243, 376, 819, 1023, 1081
Sau96I GGNCC 5 cut(s) 286, 343, 367, 875, 962
SchI GAGTC 6 cut(s) 161, 218, 245, 901, 947, 973
ScrFI CCNGG 7 cut(s) 157, 179, 290, 365, 813, 879, 1007
SduI GDGCHC 2 cut(s) 575, 848
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 491, 1223
Sfr274I CTCGAG 2 cut(s) 107, 206
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 3 cut(s) 343, 367, 875
SlaI CTCGAG 2 cut(s) 107, 206
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 3 cut(s) 107, 206, 1149
SmoI CTYRAG 3 cut(s) 107, 206, 1149
SphI GCATGC 1 cut(s) 314
Sse9I AATT 3 cut(s) 20, 113, 337
SsiI CCGC 8 cut(s) 12, 14, 66, 166, 690, 840, 887, 1071
SspI AATATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 7 cut(s) 155, 177, 288, 363, 811, 877, 1005
StyI CCWWGG 2 cut(s) 145, 459
TaaI ACNGT 2 cut(s) 619, 652
TaiI ACGT 1 cut(s) 30
TaqI TCGA 5 cut(s) 24, 108, 207, 470, 1026
TaqII GACCGA 1 cut(s) 331
TasI AATT 3 cut(s) 20, 113, 337
TatI WGTACW 1 cut(s) 993
TfiI GAWTC 2 cut(s) 403, 1195
Tru1I TTAA 4 cut(s) 450, 645, 711, 1212
Tru9I TTAA 4 cut(s) 450, 645, 711, 1212
TseFI GTSAC 4 cut(s) 86, 613, 746, 851
TseI GCWGC 2 cut(s) 667, 676
Tsp45I GTSAC 4 cut(s) 86, 613, 746, 851
TspDTI ATGAA 2 cut(s) 33, 374
TspGWI ACGGA 2 cut(s) 446, 900
VneI GTGCAC 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 343, 367, 875
XapI RAATTY 2 cut(s) 20, 337
XceI RCATGY 1 cut(s) 314
XhoI CTCGAG 2 cut(s) 107, 206
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 765
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.