Rorug06G0337900

Sarcosine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013564
Physical Location & Seq
Reverse (-)
48984316 .. 48985136
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0337900.1

Sequence Viewer

Length: 414 bp
ATGGTGTCACTGAAAGAAATAGTGCCGGCTGCACAGAACAACATAGATACAAAGTTCATACTTTTGGACAAAGGCAGCAAGACTATAGAAGGCCACAACAAGACGTGCTTGGCGCTTGTGGCGGACGAGACTGCCGCAGTTCACTTCCAGCTGTGGGGAGATGAGTGCGATGCATTTGAGCCCGGCGACATTATACAGTTGGCTAATGGCATCTTCTCTTACAACAGGAACAGTCTTGTGCTGAGGGCCGGCAAGAGAGGGAAAGTGGAGAAGGTTGGAGAGTTTACCATGGTTTTTGTTGAGACCCCCAATCTGAGTGAGATTCATTGGGTTCCTGACCCGAATAACTCGAAGAAGTACGTTCAGGATGCTGTGATTTCACCTCATTCGCGCATCTTTCCACCGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008115 GO:0008150 GO:0008152 GO:0016491 GO:0016645 GO:0016647 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00260 ko00310 ko01100 ko04146 map00260 map00310 map01100 map04146
Pfam Domains
Protein Families
DAO

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

6.06

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013564)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24580
fragaria_vesca FvH4_2g36660
malus_domestica MD08G1126500.v1.1 MD15G1106400.v1.1
prunus_persica Prupe.1G458600_v2.0.a1 Prupe.1G458800_v2.0.a1 Prupe.1G458900_v2.0.a1
pyrus_communis pycom08g10570 pycom15g09710
rosa_chinensis RchiOBHm_Chr6g0305131
rosa_laevigata RLG00000010916
rosa_multiflora Rmu_sc0000061.1_g000020
rosa_rugosa Rorug06G0337900
rosa_samantha Rh6AG449500 Rh6BG451800 Rh6CG463000 Rh6DG450000
rosa_wichuraiana Rw6G039150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 122, 135
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 154
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 122, 296
AoxI GGCC 2 cut(s) 91, 246
ApeKI GCWGC 2 cut(s) 29, 75
AspLEI GCGC 2 cut(s) 115, 393
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 372
BanII GRGCYC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 16, 87
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 122, 296
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 3 cut(s) 30, 76, 135
BlsI GCNGC 3 cut(s) 31, 77, 136
Bme1390I CCNGG 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 4 cut(s) 160, 219, 358, 402
Bpu10I CCTNAGC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 25, 248
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 233, 305
BseXI GCAGC 2 cut(s) 16, 87
BsgI GTGCAG 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 93, 248
BsiSI CCGG 3 cut(s) 26, 183, 249
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 122, 296
BsnI GGCC 2 cut(s) 93, 248
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 2 cut(s) 122, 135
BspANI GGCC 2 cut(s) 93, 248
BspCNI CTCAG 2 cut(s) 234, 306
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 25, 248
BssAI RCCGGY 2 cut(s) 25, 248
BssECI CCNNGG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 198, 233
BstC8I GCNNGC 2 cut(s) 27, 250
BstDEI CTNAG 2 cut(s) 242, 314
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 393
BstMAI GTCTC 2 cut(s) 122, 296
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 16, 87
BsuRI GGCC 2 cut(s) 93, 248
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 27, 250
CfoI GCGC 2 cut(s) 115, 393
Cfr10I RCCGGY 2 cut(s) 25, 248
Cfr13I GGNCC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 289
CviJI RGCY 6 cut(s) 29, 93, 151, 181, 203, 248
CviKI_1 RGCY 6 cut(s) 29, 93, 151, 181, 203, 248
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 242, 314
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 44, 59, 86, 194, 290
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 30, 76, 135
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 30, 76, 135
GlaI GCGC 2 cut(s) 114, 392
GluI GCNGC 3 cut(s) 30, 76, 135
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 2 cut(s) 93, 248
HapII CCGG 3 cut(s) 26, 183, 249
HhaI GCGC 2 cut(s) 115, 393
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 113, 391
HinP1I GCGC 2 cut(s) 113, 391
HinfI GANTC 1 cut(s) 322
HpaII CCGG 3 cut(s) 26, 183, 249
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 142, 285
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 2 cut(s) 335, 365
Hpy8I GTNNAC 2 cut(s) 142, 285
HpyAV CCTTC 2 cut(s) 83, 265
HpyCH4III ACNGT 2 cut(s) 198, 233
HpyCH4IV ACGT 2 cut(s) 104, 360
HpyCH4V TGCA 2 cut(s) 32, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 242, 314
HpySE526I ACGT 2 cut(s) 104, 360
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 113, 391
KroI GCCGGC 2 cut(s) 25, 248
KroNI GCCGGC 2 cut(s) 27, 250
LpnPI CCDG 7 cut(s) 39, 161, 196, 211, 262, 348, 350
Lsp1109I GCAGC 2 cut(s) 16, 87
LweI GCATC 4 cut(s) 160, 219, 358, 402
MaeII ACGT 2 cut(s) 104, 360
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 2 cut(s) 205, 364
MhlI GDGCHC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 3 cut(s) 237, 251, 393
Mph1103I ATGCAT 1 cut(s) 175
MroNI GCCGGC 2 cut(s) 25, 248
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 3 cut(s) 26, 183, 249
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 119
NaeI GCCGGC 2 cut(s) 27, 250
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 288
NgoMIV GCCGGC 2 cut(s) 25, 248
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 175
PdiI GCCGGC 2 cut(s) 27, 250
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 3 cut(s) 31, 77, 136
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SatI GCNGC 3 cut(s) 30, 76, 135
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 107, 153, 276, 363, 385
SfaNI GCATC 4 cut(s) 160, 219, 358, 402
SfcI CTRYAG 1 cut(s) 84
SsiI CCGC 2 cut(s) 122, 135
SspI AATATT 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 198, 233
TaiI ACGT 2 cut(s) 107, 363
TaqI TCGA 1 cut(s) 350
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 29, 75
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 46, 314
TspRI CASTG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.