Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010530

Physical Location & Seq

Genomic Coordinates Reverse (-)

39275260 .. 39277654

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G472300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCAACTTCTCCGAGCTCCCTTCCATGGCTGTTTCTCTTCCTGTTTTTATCAGCGCTCTTTCGTTCCTCTCAGGCTGATGTTGGCTCTGCTGCCCACTACAGCCCCCCATATTTGCCCACCGCTTGCAGGGGAAGCGACCCCTCACAGTTTCCGTCGAGCAACCTGTTTGGGTCAGCCGGCGAGGGAATATGGGACAATGGTGCGGCCTGCGGCAGGCAATATCTGGTGAGGTGCATTAGTGCGCCGGTGCTAGGAACTTGCGTTCCAGGGAAGACGATTCAGATAAAGATTGTAGATCGAGCTCTCTCTTCGGTGTCTCGGCCTTCAAGGAAAGATACTACCATGGCCCTCTCCACCACCGCCTTCGCTGCAATCGCCAACTCTTCTGCTAAGTTCGTTAACATTGAATTTCAACAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

142

Amino Acids

14.97

Weight (kDa)

9.1

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29730 FvH4_2g29730 FvH4_2g29730
malus_domestica	MD08G1142500.v1.1 MD15G1119000.v1.1
prunus_persica	Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1
pyrus_communis	pycom08g12130 pycom15g10720
rosa_chinensis	RchiOBHm_Chr6g0298751
rosa_laevigata	RLG00000011489
rosa_multiflora	Rmu_sc0002027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169370
rosa_rugosa	Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG394100 Rh6BG401900 Rh6CG407800
rosa_wichuraiana	Rw6G034470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	123, 206, 213, 363
AcsI	RAATTY	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	4 cut(s)	27, 129, 216, 254
AgsI	TTSAA	3 cut(s)	330, 410, 416
AjnI	CCWGG	1 cut(s)	268
AloI	GAACNNNNNNTCC	4 cut(s)	249, 250, 281, 282
AluBI	AGCT	2 cut(s)	18, 305
AluI	AGCT	2 cut(s)	18, 305
Alw21I	GWGCWC	2 cut(s)	20, 307
Alw26I	GTCTC	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	3 cut(s)	207, 323, 348
ApeKI	GCWGC	2 cut(s)	92, 371
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	58, 247
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	20, 307
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	20, 307
BbvI	GCAGC	2 cut(s)	79, 358
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	4 cut(s)	93, 207, 214, 372
BlsI	GCNGC	4 cut(s)	94, 208, 215, 373
Bme1390I	CCNGG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	26, 269, 345
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 129, 216, 254
Bse118I	RCCGGY	2 cut(s)	179, 247
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	26, 269, 345
BseLI	CCNNNNNNNGG	4 cut(s)	27, 129, 216, 254
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	79, 358
BshFI	GGCC	3 cut(s)	209, 325, 350
BsiHKAI	GWGCWC	2 cut(s)	20, 307
BsiSI	CCGG	2 cut(s)	180, 248
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	27, 129, 216, 254
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	209, 325, 350
Bsp1286I	GDGCHC	2 cut(s)	20, 307
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	2 cut(s)	26, 345
BspACI	CCGC	4 cut(s)	123, 206, 213, 363
BspANI	GGCC	3 cut(s)	209, 325, 350
BspCNI	CTCAG	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	179, 247
BssAI	RCCGGY	2 cut(s)	179, 247
BssECI	CCNNGG	3 cut(s)	26, 269, 345
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	26, 345
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	3 cut(s)	44, 316, 391
BstC8I	GCNNGC	4 cut(s)	127, 181, 211, 218
BstDEI	CTNAG	2 cut(s)	72, 393
BstDSI	CCRYGG	2 cut(s)	26, 345
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 247
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 371, 377
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	79, 358
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	209, 325, 350
BtgI	CCRYGG	2 cut(s)	26, 345
Cac8I	GCNNGC	4 cut(s)	127, 181, 211, 218
CfoI	GCGC	2 cut(s)	58, 247
Cfr10I	RCCGGY	2 cut(s)	179, 247
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	2 cut(s)	27, 346
DdeI	CTNAG	2 cut(s)	72, 393
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	44, 316, 391
EarI	CTCTTC	3 cut(s)	44, 316, 391
Ecl136II	GAGCTC	2 cut(s)	18, 305
Eco130I	CCWWGG	2 cut(s)	26, 345
Eco24I	GRGCYC	2 cut(s)	20, 307
Eco47III	AGCGCT	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	18, 305
EcoICRI	GAGCTC	2 cut(s)	18, 305
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	26, 345
EcoT38I	GRGCYC	2 cut(s)	20, 307
ErhI	CCWWGG	2 cut(s)	26, 345
FaeI	CATG	2 cut(s)	30, 349
FaiI	YATR	4 cut(s)	28, 112, 193, 347
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	26, 345
Fnu4HI	GCNGC	4 cut(s)	93, 207, 214, 372
FriOI	GRGCYC	2 cut(s)	20, 307
Fsp4HI	GCNGC	4 cut(s)	93, 207, 214, 372
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	57, 246
GluI	GCNGC	4 cut(s)	93, 207, 214, 372
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	209, 325, 350
HapII	CCGG	2 cut(s)	180, 248
HhaI	GCGC	2 cut(s)	58, 247
Hin1II	CATG	2 cut(s)	30, 349
Hin6I	GCGC	2 cut(s)	56, 245
HinP1I	GCGC	2 cut(s)	56, 245
HincII	GTYRAC	2 cut(s)	6, 403
HindII	GTYRAC	2 cut(s)	6, 403
HinfI	GANTC	1 cut(s)	280
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	180, 248
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	6, 403
Hpy188I	TCNGA	2 cut(s)	15, 285
Hpy8I	GTNNAC	2 cut(s)	6, 403
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	32, 336, 376
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	129, 237, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 371, 377
HpyF3I	CTNAG	2 cut(s)	72, 393
Hsp92II	CATG	2 cut(s)	30, 349
HspAI	GCGC	2 cut(s)	56, 245
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	79, 358
MaeI	CTAG	1 cut(s)	254
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	31, 286, 303, 378
MhlI	GDGCHC	2 cut(s)	20, 307
MluCI	AATT	1 cut(s)	410
MnlI	CCTC	5 cut(s)	79, 154, 178, 225, 362
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	1 cut(s)	402
MspI	CCGG	2 cut(s)	180, 248
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	135, 371, 377
NaeI	GCCGGC	1 cut(s)	181
NcoI	CCATGG	2 cut(s)	26, 345
NdeII	GATC	1 cut(s)	298
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	30, 349
NmeAIII	GCCGAG	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	94, 208, 215, 373
Psp124BI	GAGCTC	2 cut(s)	20, 307
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	349
SacI	GAGCTC	2 cut(s)	20, 307
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	93, 207, 214, 372
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	20, 307
SetI	ASST	5 cut(s)	20, 168, 236, 307, 423
SfcI	CTRYAG	1 cut(s)	100
SgrAI	CRCCGGYG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	4 cut(s)	123, 206, 213, 363
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	2 cut(s)	20, 307
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	26, 345
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	158, 301
TasI	AATT	1 cut(s)	410
TauI	GCSGC	2 cut(s)	209, 216
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseI	GCWGC	2 cut(s)	92, 371
TspGWI	ACGGA	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	410
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.