Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010530

Physical Location & Seq

Genomic Coordinates Reverse (-)

7164324 .. 7166351

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGGAATTCAAATGAATTGCCTTTGCTTGTCCGCAACAATTTTGTTAATTTGTTCTGCACTCGATCATTCTTCAGTGCCCTATTCTTCTCGCTGATCGCATACTTACCAGGAATGTCTAAGCCTCAGAGTTCTCTTCCATACCTGCTTCTGTTCTTCTTCTTCTCAGCAGCGCTCATGCATTCCTCTCAGGCTGATGTTGGCACTGCTGCTCAGTACAGGCCCCCTTATTTACCTACCGCCTGCGGTGGAAGCGACCAGGGACAGTTTCCTCCAGGCAATCTGTTCGCGTCCGTTGGCGAGGGAATTTGGGACAACGGTGCAGCTTGTGGAAGACAATATCAGGTGAGGTGCATAAGTGCTCCCGTGCGAGGAACCTGCGTTCCAGGGAACACGATTCAGGTAAAGGTTGTGGATCGTGCTCTCTCTTCGGTGTCCCGACCTTCAAGAAGTGATGCTACCATAGTTCTCTCTACTACTGCATTTGCTGCAATCGCCAACTCTTCCGCTACATTCGTTAACATCGAATTTCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

180

Amino Acids

19.34

Weight (kDa)

8.7

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29730 FvH4_2g29730 FvH4_2g29730
malus_domestica	MD08G1142500.v1.1 MD15G1119000.v1.1
prunus_persica	Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1
pyrus_communis	pycom08g12130 pycom15g10720
rosa_chinensis	RchiOBHm_Chr6g0298751
rosa_laevigata	RLG00000011489
rosa_multiflora	Rmu_sc0002027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169370
rosa_rugosa	Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG394100 Rh6BG401900 Rh6CG407800
rosa_wichuraiana	Rw6G034470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	153, 386
AccII	CGCG	1 cut(s)	290
AciI	CCGC	4 cut(s)	34, 240, 246, 507
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	3 cut(s)	7, 306, 527
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	12, 447, 533
AjnI	CCWGG	4 cut(s)	109, 258, 274, 385
AloI	GAACNNNNNNTCC	4 cut(s)	366, 367, 398, 399
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw21I	GWGCWC	2 cut(s)	364, 424
AlwI	GGATC	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	170, 209, 323, 488
ApoI	RAATTY	3 cut(s)	7, 306, 527
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	442, 474
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	364, 424
BbvI	GCAGC	4 cut(s)	182, 196, 335, 475
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 360, 394
BciT130I	CCWGG	4 cut(s)	111, 260, 276, 387
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	2 cut(s)	153, 386
BisI	GCNGC	4 cut(s)	171, 210, 324, 489
BlsI	GCNGC	4 cut(s)	172, 211, 325, 490
Bme1390I	CCNGG	4 cut(s)	111, 260, 276, 387
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	224, 376
BmrFI	CCNGG	4 cut(s)	111, 260, 276, 387
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	259, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
BseBI	CCWGG	4 cut(s)	111, 260, 276, 387
BseDI	CCNNGG	2 cut(s)	259, 386
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	4 cut(s)	140, 180, 203, 227
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	182, 196, 335, 475
BsgI	GTGCAG	2 cut(s)	43, 342
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	364, 424
BslFI	GGGAC	3 cut(s)	276, 326, 421
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	3 cut(s)	276, 326, 421
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	82, 364, 424
Bsp143I	GATC	3 cut(s)	65, 96, 415
BspACI	CCGC	4 cut(s)	34, 240, 246, 507
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	4 cut(s)	139, 179, 202, 226
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	224, 376
BspMI	ACCTGC	2 cut(s)	153, 386
BspPI	GGATC	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	259, 386
BssMI	GATC	3 cut(s)	65, 96, 415
Bst2UI	CCWGG	4 cut(s)	111, 260, 276, 387
Bst4CI	ACNGT	3 cut(s)	267, 320, 537
Bst6I	CTCTTC	3 cut(s)	141, 433, 508
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	5 cut(s)	120, 126, 166, 189, 213
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	68, 99, 418
BstMBI	GATC	3 cut(s)	65, 96, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 488, 494
BstNI	CCWGG	4 cut(s)	111, 260, 276, 387
BstSCI	CCNGG	4 cut(s)	109, 258, 274, 385
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	182, 196, 335, 475
BstV2I	GAAGAC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	82, 204
BveI	ACCTGC	2 cut(s)	153, 386
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	4 cut(s)	124, 194, 223, 326
CviKI_1	RGCY	4 cut(s)	124, 194, 223, 326
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	5 cut(s)	120, 126, 166, 189, 213
DpnI	GATC	3 cut(s)	67, 98, 417
DpnII	GATC	3 cut(s)	65, 96, 415
Eam1104I	CTCTTC	3 cut(s)	141, 433, 508
EarI	CTCTTC	3 cut(s)	141, 433, 508
Eco47III	AGCGCT	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	109, 258, 274, 385
EcoT22I	ATGCAT	1 cut(s)	183
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	103, 142, 179, 356, 464
FaqI	GGGAC	3 cut(s)	276, 326, 421
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	171, 210, 324, 489
Fsp4HI	GCNGC	4 cut(s)	171, 210, 324, 489
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	171, 210, 324, 489
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	223
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	1 cut(s)	397
HpaI	GTTAAC	1 cut(s)	520
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	438, 447
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	3 cut(s)	267, 320, 537
HpyCH4V	TGCA	6 cut(s)	60, 181, 323, 354, 482, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 488, 494
HpyF3I	CTNAG	5 cut(s)	120, 126, 166, 189, 213
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	173
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	65, 96, 415
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	4 cut(s)	182, 196, 335, 475
LweI	GCATC	1 cut(s)	445
MalI	GATC	3 cut(s)	67, 98, 417
MboI	GATC	3 cut(s)	65, 96, 415
MboII	GAAGA	9 cut(s)	64, 79, 128, 148, 151, 154, 345, 420, 495
MhlI	GDGCHC	3 cut(s)	82, 364, 424
MluCI	AATT	6 cut(s)	7, 17, 40, 49, 306, 527
MnlI	CCTC	6 cut(s)	135, 196, 282, 295, 342, 365
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	2 cut(s)	48, 519
MspR9I	CCNGG	4 cut(s)	111, 260, 276, 387
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	4 cut(s)	111, 260, 276, 387
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	252, 488, 494
NdeII	GATC	3 cut(s)	65, 96, 415
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	224, 376
NsiI	ATGCAT	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	172, 211, 325, 490
Psp6I	CCWGG	4 cut(s)	109, 258, 274, 385
PspGI	CCWGG	4 cut(s)	109, 258, 274, 385
PspN4I	GGNNCC	2 cut(s)	224, 376
PspPI	GGNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	48, 519
SatI	GCNGC	4 cut(s)	171, 210, 324, 489
Sau3AI	GATC	3 cut(s)	65, 96, 415
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	4 cut(s)	111, 260, 276, 387
SduI	GDGCHC	3 cut(s)	82, 364, 424
SetI	ASST	9 cut(s)	147, 238, 328, 348, 353, 380, 405, 411, 445
SfaNI	GCATC	1 cut(s)	445
Sse9I	AATT	6 cut(s)	7, 17, 40, 49, 306, 527
SsiI	CCGC	4 cut(s)	34, 240, 246, 507
StyD4I	CCNGG	4 cut(s)	109, 258, 274, 385
TaaI	ACNGT	3 cut(s)	267, 320, 537
TaqI	TCGA	2 cut(s)	64, 525
TasI	AATT	6 cut(s)	7, 17, 40, 49, 306, 527
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	48, 519
Tru9I	TTAA	2 cut(s)	48, 519
TscAI	CASTG	2 cut(s)	82, 211
TseI	GCWGC	4 cut(s)	170, 209, 323, 488
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	82, 211
XapI	RAATTY	3 cut(s)	7, 306, 527
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.