Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010530

Physical Location & Seq

Genomic Coordinates Reverse (-)

10420372 .. 10433507

Gene Structure 13136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTAGTCGATCAGTTTCTAATTTGTTTCTCCTGCACTCCATCAGCCTTCAGGCCCCTATTCTTTTCGCTGATCACGCTTACCAGGCAAATGTCTAAGCCTCAGAGTTCTCTTCCATGCCTGCTTCTGATCTTCTTATCCGAAGCGCTCTTTCATTCCTCTCAGGCTGACGTTGGCACTGCTGCTCAGTACAGGCCCCCTTATTTACCTACCGCCTGTGGTGGAAGTGACCAGGGACAGTTTCCTCCAAGCAACCTGTTCGCGTCCGTTGGCGAGGGAATTTGGGACAATGGTGCAGCTTGTGGAAGGCAATATCAGGTGAGGTGCATAAGCGCTCCCGTGCGAGGAACCTGCGTTCCAGGGAACACGATTCAGGTAAAGATTGTAGATCGTGCACTCTCTTCGGTGTCCAGACCTTCAAGAAGTGATGCTACCATAGTTCTCTCTACTACTGCATTTGCTGCAATCGCCAACTCTTCCGCAACATTCGTTAACATAGAATTTCAACAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1

Protein Analysis

172

Amino Acids

18.35

Weight (kDa)

8.21

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29730 FvH4_2g29730 FvH4_2g29730
malus_domestica	MD08G1142500.v1.1 MD15G1119000.v1.1
prunus_persica	Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1 Prupe.1G472300_v2.0.a1
pyrus_communis	pycom08g12130 pycom15g10720
rosa_chinensis	RchiOBHm_Chr6g0298751
rosa_laevigata	RLG00000011489
rosa_multiflora	Rmu_sc0002027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169370
rosa_rugosa	Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG394100 Rh6BG401900 Rh6CG407800
rosa_wichuraiana	Rw6G034470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	213, 480
AcsI	RAATTY	2 cut(s)	279, 500
AcuI	CTGAAG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	191
AfeI	AGCGCT	2 cut(s)	147, 334
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	420, 506
AjnI	CCWGG	3 cut(s)	83, 231, 358
AloI	GAACNNNNNNTCC	4 cut(s)	339, 340, 371, 372
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	393
Aor51HI	AGCGCT	2 cut(s)	147, 334
AoxI	GGCC	2 cut(s)	53, 194
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	3 cut(s)	182, 296, 461
ApoI	RAATTY	2 cut(s)	279, 500
AspLEI	GCGC	2 cut(s)	148, 335
AspS9I	GGNCC	2 cut(s)	54, 195
AsuHPI	GGTGA	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	397
BarI	GAAGNNNNNNTAC	2 cut(s)	415, 447
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	169, 308, 448
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	6 cut(s)	241, 275, 333, 367, 384, 418
BciT130I	CCWGG	3 cut(s)	85, 233, 360
BclI	TGATCA	1 cut(s)	72
BfoI	RGCGCY	2 cut(s)	149, 336
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	183, 297, 462
BlsI	GCNGC	3 cut(s)	184, 298, 463
Bme1390I	CCNGG	3 cut(s)	85, 233, 360
BmgT120I	GGNCC	2 cut(s)	54, 195
BmiI	GGNNCC	3 cut(s)	56, 197, 349
BmrFI	CCNGG	3 cut(s)	85, 233, 360
BmsI	GCATC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	232, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
BseBI	CCWGG	3 cut(s)	85, 233, 360
BseDI	CCNNGG	2 cut(s)	232, 359
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	3 cut(s)	116, 176, 200
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	169, 308, 448
BsgI	GTGCAG	2 cut(s)	19, 315
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	55, 196
BsiHKAI	GWGCWC	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	249, 299
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	249, 299
BsnI	GGCC	2 cut(s)	55, 196
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	10, 72, 129, 388
BspACI	CCGC	2 cut(s)	213, 480
BspANI	GGCC	2 cut(s)	55, 196
BspCNI	CTCAG	3 cut(s)	115, 175, 199
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	56, 197, 349
BspMI	ACCTGC	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	232, 359
BssMI	GATC	4 cut(s)	10, 72, 129, 388
Bst2UI	CCWGG	3 cut(s)	85, 233, 360
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	3 cut(s)	117, 406, 481
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	4 cut(s)	96, 102, 162, 186
BstFNI	CGCG	1 cut(s)	263
BstH2I	RGCGCY	2 cut(s)	149, 336
BstHHI	GCGC	2 cut(s)	148, 335
BstKTI	GATC	4 cut(s)	13, 75, 132, 391
BstMBI	GATC	4 cut(s)	10, 72, 129, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 85, 461, 467
BstNI	CCWGG	3 cut(s)	85, 233, 360
BstSCI	CCNGG	3 cut(s)	83, 231, 358
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	169, 308, 448
BsuRI	GGCC	2 cut(s)	55, 196
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	148, 335
Cfr13I	GGNCC	2 cut(s)	54, 195
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	47, 55, 100, 167, 196, 299
CviKI_1	RGCY	6 cut(s)	47, 55, 100, 167, 196, 299
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	4 cut(s)	96, 102, 162, 186
DpnI	GATC	4 cut(s)	12, 74, 131, 390
DpnII	GATC	4 cut(s)	10, 72, 129, 388
Eam1104I	CTCTTC	3 cut(s)	117, 406, 481
EarI	CTCTTC	3 cut(s)	117, 406, 481
Eco47III	AGCGCT	2 cut(s)	147, 334
Eco57I	CTGAAG	1 cut(s)	34
EcoO109I	RGGNCCY	2 cut(s)	54, 195
EcoRII	CCWGG	3 cut(s)	83, 231, 358
FaeI	CATG	1 cut(s)	120
FaiI	YATR	5 cut(s)	118, 329, 437, 497, 514
FaqI	GGGAC	2 cut(s)	249, 299
FatI	CATG	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	183, 297, 462
Fsp4HI	GCNGC	3 cut(s)	183, 297, 462
GlaI	GCGC	2 cut(s)	147, 334
GluI	GCNGC	3 cut(s)	183, 297, 462
HaeII	RGCGCY	2 cut(s)	149, 336
HaeIII	GGCC	2 cut(s)	55, 196
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	2 cut(s)	148, 335
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	2 cut(s)	146, 333
HinP1I	GCGC	2 cut(s)	146, 333
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	1 cut(s)	370
HpaI	GTTAAC	1 cut(s)	493
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	395, 493
Hpy188I	TCNGA	3 cut(s)	105, 129, 142
Hpy188III	TCNNGA	2 cut(s)	411, 420
Hpy8I	GTNNAC	2 cut(s)	395, 493
HpyAV	CCTTC	3 cut(s)	58, 300, 426
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	6 cut(s)	36, 296, 327, 395, 455, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 85, 461, 467
HpyF3I	CTNAG	4 cut(s)	96, 102, 162, 186
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	2 cut(s)	146, 333
Ksp22I	TGATCA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	10, 72, 129, 388
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	169, 308, 448
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	12, 74, 131, 390
MboI	GATC	4 cut(s)	10, 72, 129, 388
MboII	GAAGA	4 cut(s)	104, 124, 393, 468
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	21, 279, 500
MnlI	CCTC	6 cut(s)	111, 169, 255, 268, 315, 338
MseI	TTAA	1 cut(s)	492
MspR9I	CCNGG	3 cut(s)	85, 233, 360
MvaI	CCWGG	3 cut(s)	85, 233, 360
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	76, 85, 461, 467
NdeII	GATC	4 cut(s)	10, 72, 129, 388
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	3 cut(s)	56, 197, 349
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	184, 298, 463
Psp6I	CCWGG	3 cut(s)	83, 231, 358
PspGI	CCWGG	3 cut(s)	83, 231, 358
PspN4I	GGNNCC	3 cut(s)	56, 197, 349
PspPI	GGNCC	2 cut(s)	54, 195
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	183, 297, 462
Sau3AI	GATC	4 cut(s)	10, 72, 129, 388
Sau96I	GGNCC	2 cut(s)	54, 195
ScrFI	CCNGG	3 cut(s)	85, 233, 360
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	9 cut(s)	174, 211, 258, 301, 321, 326, 353, 378, 418
SfaNI	GCATC	1 cut(s)	418
Sse9I	AATT	3 cut(s)	21, 279, 500
SsiI	CCGC	2 cut(s)	213, 480
StyD4I	CCNGG	3 cut(s)	83, 231, 358
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	21, 279, 500
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	182, 296, 461
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	393
XapI	RAATTY	2 cut(s)	279, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.