Prupe.1G533100_v2.0.a1

Protein VERNALIZATION INSENSITIVE

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
43586170 .. 43591050
4881 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G533100.1

Sequence Viewer

Length: 1890 bp
ATGAACAACCCAGAAGCGAGGGCTTCAGACATGCAGTCTCTGTTCTCAGGTTTTGTACTTGACCCTGAAAAGTGTAGCAGGCTAAGCTTGGGAGAGAAGAGAGAACTAGTTCATGAGATTGCCCAATGGTCAAAAGATGCCCCAGGAATCCTTAGTTCGTTTACCCGTAGGGAGCTTCTTGAAATTATCTGTGCTGAAATGGGTAAGGAGAGGAAGTACAGAGGATATACAAAACCTAAAATGATAGCACAGCTTTTAAAGGTAGTATCTGAGAAATCTAAGAGTATTACTAAAAGCTCTCCTGCATTTTCTCCGGCCAAAACTCAAACGGGAAAGAAAAGGAAAAGGGACGTAGAAGCTTCCTTTCAACCACTCATTGGCCCAGGTCGTGTTTCTCCTGTGACTAGTCAAGAAGGACACCCTAAATACCAAGTCTGTCAGAATGTAGCTTGCAGAGCTGCCTTAGGGTCAGAGGAGTCTTTTTGCAAGAGATGTTCTTGCTATATCTGTCATCTTTTCGATGATAACAAGGACCCTAGTCTATGGTTGACCTGTGGCTCTGATACTGCTGATGAGAATGGTCCATGTGGAATATCATGCCATCTGGAGTGTGCTCTAAAGCATGAAAAAGCTGGCATTATGAAGAATGGTTGCTGCCCAGAGTTGGATGGAAGCTTCTATTGCATTGCTTGTGGAAAGGTTAATGATTTAATGAGAACCTGGAGAAAACAATTAATGATTGCAAAGGAGGCTAGAAGAGTGGATGTACTGTGTCTACGAATTTCTCTGTCTTACAAAATTCTTTCAGGAACGGAGAAATACCAGAAACTACAGAACACTTTAGAAACTGCTATTAAAAAGCTGAAGAATGAAGTAGGCCCACTGGAACAGGTCTGTGCAAAGATGGCGCGTGGAATTGTTAACAGGCTCTCTTGTGGTGCTGATGTTCAGAAGTTGTGCAATTCTGCAGTGGAATCTTTTGATTCAGTGTTTTCTGATCCTTGCCCTGTCCATGTGGAAAAGGAAGAGCGAGCAACTTGCCGCATCCAGTTTGAAGACTCAACCCCTACTTCTGTTGTCATCGTGCTAGAATATGAGGATCTTCTTTTTAACAACTTCTTGGGTTGCAGGCTGTGGCATCGTAAGTCTGATGTGAAGGATTATCCAGACCAACCCTCTTTCATTGTTTTAAGGCCAGAGAAGAAATTTAGTCTCACCAATCTCCATCCCTCAGCTGAATATTTCTGCAAGGTTTCTTTGTTTAGCAACGCAGGAGTATTGGGTGTTTGGGAAGCTAAATGGGTCACACCTGCATTGTATGATAGCTCTGTTATGTTAGAGAATCAGAGAAGGGAAGAGAATGTAGCAGTTGTTCAAAATCATTCCCAAGAAGAATCAACCAATTCTAGTGACATCAAATTAGCTTCTGGAGACCATACTGCGAAGCTTCAATCCTCGAATGGCATCAACAAGAACCAGAGCAAAAGGCTCTACTCACTGCCTTCTCTAACAGAAACTGCTTCTTTGATCAAAGCAGTTTCTCCATTGACACCTTGTAAATCCAACGGAATGCGTAAAGTACCAGGTTTCAGGTGTACAAAGCGAGCAGAGGAAAGTGATTACGACTACTCTGTGAGAGCAATCAAATGGCTAGAGCATGAGGGCAACATAGATGAAGATTTTAGAGTAAAATTTCTTACTTGGTTCAGTCTGAAGGCTAATATGCAAGAACGAAGAGTGGTCAGAGTATTTGTGGACACGTTCACTGATGATCCATCAAGCTTGGCTGGGCAGCTCATCCATAGCTTTGGGGATAAGATTTGCTGTCACCAAAAGAATGAGCAAATTTTTAGCATTGGTCTTACACAAGGTTGTGCCATCAAATTTTGA

Protein Analysis

630

Amino Acids

70.68

Weight (kDa)

8.56

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1318
Acc36I ACCTGC 1 cut(s) 1318
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 1 cut(s) 775
AccII CGCG 1 cut(s) 910
AciI CCGC 1 cut(s) 1042
AclWI GGATC 3 cut(s) 992, 1107, 1766
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 6 cut(s) 780, 798, 1205, 1691, 1845, 1883
AcuI CTGAAG 3 cut(s) 9, 884, 1733
AfaI GTAC 5 cut(s) 57, 218, 768, 1581, 1597
AfiI CCNNNNNNNGG 2 cut(s) 377, 664
AflIII ACRYGT 1 cut(s) 1758
AgsI TTSAA 5 cut(s) 182, 368, 1055, 1376, 1451
AhdI GACNNNNNGTC 1 cut(s) 34
AhlI ACTAGT 2 cut(s) 106, 404
AjnI CCWGG 4 cut(s) 142, 382, 719, 1582
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 3 cut(s) 42, 1217, 1425
AlwI GGATC 3 cut(s) 992, 1107, 1766
AlwNI CAGNNNCTG 2 cut(s) 40, 1517
AoxI GGCC 4 cut(s) 315, 379, 877, 1193
ApeKI GCWGC 3 cut(s) 458, 654, 1792
ApoI RAATTY 6 cut(s) 780, 798, 1205, 1691, 1845, 1883
AseI ATTAAT 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 4 cut(s) 380, 532, 581, 878
AsuHPI GGTGA 2 cut(s) 1207, 1820
AvaII GGWCC 2 cut(s) 532, 581
AxyI CCTNAGG 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 1062
Bbv12I GWGCWC 1 cut(s) 616
BbvCI CCTCAGC 1 cut(s) 1231
BbvI GCAGC 3 cut(s) 445, 641, 1804
BccI CCATC 6 cut(s) 609, 662, 898, 1233, 1783, 1886
BcgI CGANNNNNNTGC 2 cut(s) 1020, 1054
BciT130I CCWGG 4 cut(s) 144, 384, 721, 1584
BclI TGATCA 1 cut(s) 1527
BcoDI GTCTC 3 cut(s) 42, 1217, 1425
BcuI ACTAGT 2 cut(s) 106, 404
BfaI CTAG 7 cut(s) 107, 405, 537, 753, 1088, 1407, 1652
BfmI CTRYAG 2 cut(s) 830, 966
BfuAI ACCTGC 1 cut(s) 1318
BisI GCNGC 4 cut(s) 459, 655, 1042, 1793
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 4 cut(s) 460, 656, 1043, 1794
Bme1390I CCNGG 4 cut(s) 144, 384, 721, 1584
Bme18I GGWCC 2 cut(s) 532, 581
BmeRI GACNNNNNGTC 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 380, 532, 581, 878
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 4 cut(s) 144, 384, 721, 1584
BmsI GCATC 4 cut(s) 127, 1053, 1147, 1473
BoxI GACNNNNGTC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 1062
BpmI CTGGAG 3 cut(s) 626, 742, 1449
Bpu10I CCTNAGC 1 cut(s) 1231
Bpu1102I GCTNAGC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 1425
BsaJI CCNNGG 2 cut(s) 142, 382
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 664
Bse1I ACTGG 2 cut(s) 888, 1048
Bse21I CCTNAGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 4 cut(s) 144, 384, 721, 1584
BseDI CCNNGG 2 cut(s) 142, 382
BseGI GGATG 5 cut(s) 673, 769, 1044, 1225, 1797
BseLI CCNNNNNNNGG 2 cut(s) 377, 664
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 3 cut(s) 60, 261, 1245
BseNI ACTGG 2 cut(s) 888, 1048
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 3 cut(s) 445, 641, 1804
BseYI CCCAGC 1 cut(s) 1787
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 4 cut(s) 317, 381, 879, 1195
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 377, 664
BsmAI GTCTC 3 cut(s) 42, 1217, 1425
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 1575
BsnI GGCC 4 cut(s) 317, 381, 879, 1195
Bso31I GGTCTC 1 cut(s) 1425
Bsp1286I GDGCHC 1 cut(s) 616
Bsp1407I TGTACA 1 cut(s) 1595
Bsp143I GATC 4 cut(s) 997, 1099, 1527, 1771
Bsp1720I GCTNAGC 1 cut(s) 83
BspACI CCGC 1 cut(s) 1042
BspANI GGCC 4 cut(s) 317, 381, 879, 1195
BspCNI CTCAG 3 cut(s) 59, 262, 1244
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 534
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 1318
BspPI GGATC 3 cut(s) 992, 1107, 1766
BspQI GCTCTTC 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 1425
BsrDI GCAATG 1 cut(s) 684
BsrGI TGTACA 1 cut(s) 1595
BsrI ACTGG 2 cut(s) 888, 1048
BssECI CCNNGG 2 cut(s) 142, 382
BssMI GATC 4 cut(s) 997, 1099, 1527, 1771
Bst2UI CCWGG 4 cut(s) 144, 384, 721, 1584
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 5 cut(s) 92, 751, 1020, 1350, 1729
BstAUI TGTACA 1 cut(s) 1595
BstC8I GCNNGC 6 cut(s) 80, 451, 634, 1032, 1130, 1605
BstDEI CTNAG 7 cut(s) 46, 83, 152, 270, 279, 463, 1231
BstF5I GGATG 5 cut(s) 673, 769, 1044, 1225, 1797
BstFNI CGCG 1 cut(s) 910
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 4 cut(s) 1000, 1102, 1530, 1774
BstMAI GTCTC 3 cut(s) 42, 1217, 1425
BstMBI GATC 4 cut(s) 997, 1099, 1527, 1771
BstMWI GCNNNNNNNGC 5 cut(s) 84, 455, 681, 749, 905
BstNI CCWGG 4 cut(s) 144, 384, 721, 1584
BstNSI RCATGY 1 cut(s) 34
BstPAI GACNNNNGTC 1 cut(s) 537
BstSCI CCNGG 4 cut(s) 142, 382, 719, 1582
BstSFI CTRYAG 2 cut(s) 830, 966
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 445, 641, 1804
BstV2I GAAGAC 1 cut(s) 1062
BstX2I RGATCY 1 cut(s) 1099
BstXI CCANNNNNNTGG 1 cut(s) 1808
BstYI RGATCY 1 cut(s) 1099
Bsu36I CCTNAGG 1 cut(s) 463
BsuRI GGCC 4 cut(s) 317, 381, 879, 1195
BtsCI GGATG 5 cut(s) 673, 769, 1044, 1225, 1797
BtsI GCAGTG 2 cut(s) 975, 1496
BtsIMutI CAGTG 5 cut(s) 881, 975, 993, 1496, 1764
BveI ACCTGC 1 cut(s) 1318
Cac8I GCNNGC 6 cut(s) 80, 451, 634, 1032, 1130, 1605
CaiI CAGNNNCTG 2 cut(s) 40, 1517
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 910
Cfr13I GGNCC 4 cut(s) 380, 532, 581, 878
CsiI ACCWGGT 1 cut(s) 1582
Csp6I GTAC 5 cut(s) 56, 217, 767, 1580, 1596
CviAII CATG 7 cut(s) 31, 113, 585, 597, 623, 1013, 1658
CviQI GTAC 5 cut(s) 56, 217, 767, 1580, 1596
DdeI CTNAG 7 cut(s) 46, 83, 152, 270, 279, 463, 1231
DpnI GATC 4 cut(s) 999, 1101, 1529, 1773
DpnII GATC 4 cut(s) 997, 1099, 1527, 1771
DraI TTTAAA 1 cut(s) 258
DriI GACNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 5 cut(s) 92, 751, 1020, 1350, 1729
Eam1105I GACNNNNNGTC 1 cut(s) 34
EarI CTCTTC 5 cut(s) 92, 751, 1020, 1350, 1729
Eco31I GGTCTC 1 cut(s) 1425
Eco47I GGWCC 2 cut(s) 532, 581
Eco57I CTGAAG 3 cut(s) 9, 884, 1733
Eco81I CCTNAGG 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 4 cut(s) 142, 382, 719, 1582
FaeI CATG 7 cut(s) 34, 116, 588, 600, 626, 1016, 1661
FaqI GGGAC 1 cut(s) 362
FatI CATG 7 cut(s) 30, 112, 584, 596, 622, 1012, 1657
FbaI TGATCA 1 cut(s) 1527
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 459, 655, 1042, 1793
FokI GGATG 5 cut(s) 680, 776, 1031, 1212, 1784
Fsp4HI GCNGC 4 cut(s) 459, 655, 1042, 1793
FspBI CTAG 7 cut(s) 107, 405, 537, 753, 1088, 1407, 1652
GlaI GCGC 1 cut(s) 909
GluI GCNGC 4 cut(s) 459, 655, 1042, 1793
GsaI CCCAGC 1 cut(s) 1791
GsuI CTGGAG 3 cut(s) 626, 742, 1449
HaeIII GGCC 4 cut(s) 317, 381, 879, 1195
HapII CCGG 1 cut(s) 314
HhaI GCGC 1 cut(s) 910
Hin1II CATG 7 cut(s) 34, 116, 588, 600, 626, 1016, 1661
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 2 cut(s) 549, 922
HindII GTYRAC 2 cut(s) 549, 922
HindIII AAGCTT 5 cut(s) 85, 357, 673, 1445, 1780
HinfI GANTC 7 cut(s) 147, 476, 974, 983, 1058, 1342, 1394
HpaI GTTAAC 1 cut(s) 922
HpaII CCGG 1 cut(s) 314
HphI GGTGA 2 cut(s) 1207, 1820
Hpy166II GTNNAC 7 cut(s) 162, 549, 776, 922, 1596, 1756, 1764
Hpy188III TCNNGA 7 cut(s) 113, 179, 410, 605, 807, 1166, 1428
Hpy8I GTNNAC 7 cut(s) 162, 549, 776, 922, 1596, 1756, 1764
HpyAV CCTTC 5 cut(s) 407, 1150, 1344, 1512, 1708
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 2 cut(s) 351, 1760
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 455, 681, 749, 905
HpyF3I CTNAG 7 cut(s) 46, 83, 152, 270, 279, 463, 1231
HpySE526I ACGT 2 cut(s) 351, 1760
Hsp92II CATG 7 cut(s) 34, 116, 588, 600, 626, 1016, 1661
HspAI GCGC 1 cut(s) 908
Ksp22I TGATCA 1 cut(s) 1527
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 4 cut(s) 997, 1099, 1527, 1771
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 3 cut(s) 445, 641, 1804
LweI GCATC 4 cut(s) 127, 1053, 1147, 1473
MabI ACCWGGT 1 cut(s) 1582
MaeI CTAG 7 cut(s) 107, 405, 537, 753, 1088, 1407, 1652
MaeII ACGT 2 cut(s) 351, 1760
MaeIII GTNAC 4 cut(s) 400, 1303, 1409, 1826
MalI GATC 4 cut(s) 999, 1101, 1529, 1773
MboI GATC 4 cut(s) 997, 1099, 1527, 1771
MflI RGATCY 1 cut(s) 1099
MhlI GDGCHC 1 cut(s) 616
MlyI GAGTC 2 cut(s) 485, 1052
MmeI TCCRAC 2 cut(s) 645, 1587
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 8 cut(s) 257, 702, 710, 734, 855, 921, 1110, 1190
MspA1I CMGCKG 1 cut(s) 1235
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 4 cut(s) 144, 384, 721, 1584
Mva1269I GAATGC 1 cut(s) 1575
MvaI CCWGG 4 cut(s) 144, 384, 721, 1584
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 5 cut(s) 84, 455, 681, 749, 905
NdeII GATC 4 cut(s) 997, 1099, 1527, 1771
NlaIII CATG 7 cut(s) 34, 116, 588, 600, 626, 1016, 1661
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 4 cut(s) 400, 1303, 1409, 1826
NspI RCATGY 1 cut(s) 34
PagI TCATGA 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 1318
PciSI GCTCTTC 1 cut(s) 1020
PctI GAATGC 1 cut(s) 1575
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 5 cut(s) 147, 974, 983, 1342, 1394
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 4 cut(s) 460, 656, 1043, 1794
PleI GAGTC 2 cut(s) 484, 1052
PpsI GAGTC 2 cut(s) 484, 1052
PpuMI RGGWCCY 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 537
PshBI ATTAAT 1 cut(s) 734
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 4 cut(s) 142, 382, 719, 1582
PspFI CCCAGC 1 cut(s) 1787
PspGI CCWGG 4 cut(s) 142, 382, 719, 1582
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 4 cut(s) 380, 532, 581, 878
PspPPI RGGWCCY 1 cut(s) 532
PsrI GAACNNNNNNTAC 2 cut(s) 1356, 1388
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 2 cut(s) 40, 1517
PsuI RGATCY 1 cut(s) 1099
PvuII CAGCTG 1 cut(s) 1235
RsaI GTAC 5 cut(s) 57, 218, 768, 1581, 1597
RsaNI GTAC 5 cut(s) 56, 217, 767, 1580, 1596
SapI GCTCTTC 1 cut(s) 1020
SaqAI TTAA 8 cut(s) 257, 702, 710, 734, 855, 921, 1110, 1190
SatI GCNGC 4 cut(s) 459, 655, 1042, 1793
Sau3AI GATC 4 cut(s) 997, 1099, 1527, 1771
Sau96I GGNCC 4 cut(s) 380, 532, 581, 878
SchI GAGTC 2 cut(s) 485, 1052
ScrFI CCNGG 4 cut(s) 144, 384, 721, 1584
SduI GDGCHC 1 cut(s) 616
SexAI ACCWGGT 1 cut(s) 1582
SfaNI GCATC 4 cut(s) 127, 1053, 1147, 1473
SfcI CTRYAG 2 cut(s) 830, 966
SinI GGWCC 2 cut(s) 532, 581
SpeI ACTAGT 2 cut(s) 106, 404
SsiI CCGC 1 cut(s) 1042
SspI AATATT 1 cut(s) 1241
SspMI CTAG 7 cut(s) 107, 405, 537, 753, 1088, 1407, 1652
StyD4I CCNGG 4 cut(s) 142, 382, 719, 1582
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 2 cut(s) 354, 1763
TaqI TCGA 2 cut(s) 519, 1457
TatI WGTACW 4 cut(s) 55, 216, 766, 1595
TauI GCSGC 1 cut(s) 1044
TfiI GAWTC 5 cut(s) 147, 974, 983, 1342, 1394
Tru1I TTAA 8 cut(s) 257, 702, 710, 734, 855, 921, 1110, 1190
Tru9I TTAA 8 cut(s) 257, 702, 710, 734, 855, 921, 1110, 1190
TscAI CASTG 5 cut(s) 888, 975, 993, 1503, 1771
TseFI GTSAC 4 cut(s) 400, 1303, 1409, 1826
TseI GCWGC 3 cut(s) 458, 654, 1792
Tsp45I GTSAC 4 cut(s) 400, 1303, 1409, 1826
TspDTI ATGAA 7 cut(s) 17, 101, 639, 656, 885, 1171, 1689
TspGWI ACGGA 2 cut(s) 827, 1581
TspRI CASTG 5 cut(s) 888, 975, 993, 1503, 1771
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 532, 581
VspI ATTAAT 1 cut(s) 734
XapI RAATTY 6 cut(s) 780, 798, 1205, 1691, 1845, 1883
XceI RCATGY 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 7 cut(s) 107, 405, 537, 753, 1088, 1407, 1652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.