Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011568

Physical Location & Seq

Genomic Coordinates Forward (+)

28605524 .. 28605712

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0292600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTTGCCCATGATGTTACCAAACCGGTAATGCTCGAACGCAAAGTATTCTTGGATGTTGGTGTTGAACCTATCTTGCAGTTCCAGTTTAAGCACCTGAAAGGAAGATGTCCTCAGTGTGGTCTAATCACATATGCAGGAGCAAAGTGTGAGGAGCCAAAATTCCTAGCCCAACAATTAGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

62

Amino Acids

7.05

Weight (kDa)

8.55

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	5 - 51	1.6e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34860 FvH4_5g34860 FvH4_5g34860
malus_domestica	MD08G1199400.v1.1 MD15G1386900.v1.1
prunus_persica	Prupe.1G533100_v2.0.a1
pyrus_communis	pycom08g17320 pycom15g34690
rosa_chinensis	RchiOBHm_Chr7g0235781
rosa_laevigata	RLG00000001140
rosa_multiflora	Rmu_sc0002543.1_g000002 Rmu_sc0008940.1_g000010
rosa_roxburghii	Rroxscaffold_3G00225640
rosa_rugosa	Rorug07G0292600 Rorug07G0292700
rosa_samantha	Rh7AG447600 Rh7BG419800 Rh7CG468100 Rh7DG436600
rosa_wichuraiana	Rw7G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	25
BfaI	CTAG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	2 cut(s)	157, 170
CviKI_1	RGCY	2 cut(s)	157, 170
DdeI	CTNAG	1 cut(s)	114
FaeI	CATG	1 cut(s)	14
FaiI	YATR	3 cut(s)	12, 133, 135
FatI	CATG	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	133
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	167
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	14
HpaII	CCGG	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	79, 137
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	140, 154
LpnPI	CCDG	4 cut(s)	39, 98, 110, 123
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	117
MluCI	AATT	2 cut(s)	161, 176
MnlI	CCTC	2 cut(s)	123, 145
MseI	TTAA	1 cut(s)	90
MspI	CCGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	133
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	156
PinAI	ACCGGT	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	90
SetI	ASST	2 cut(s)	73, 99
SgeI	CNNG	9 cut(s)	23, 38, 47, 64, 88, 97, 109, 150, 179
Sse9I	AATT	2 cut(s)	161, 176
SspMI	CTAG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	161, 176
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	122
TspRI	CASTG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.