Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011568

Physical Location & Seq

Genomic Coordinates Forward (+)

28605802 .. 28606435

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGAAGAAACCAACTATTAGAAGGTTGGTGAGATCCAATGCTGACACTGCAACAGGTACTGATTCTGTAGCAGAGGAACAAAGGAGGGATGCTTTTGACCCTATTGAAGAGCAGGTTGTGGAGCAGCTCTTCTCTGAAGAAATTCAAGACTATCTTGGGTGGGAAGCTTCCTACCTGCACGCTAAGGCTCTAGGGTTGGTAGAAGATGATTCTGATGTCATTTTGATGACACTGAAGAAGAAGTCAGGCAGGCCACTTGGAAGCAAGAACAAGAACCCTCGACCTGGTAAGAAGTCGGTTGCTGCTACTCTACGTCTTACTTACCCTGCAGCTACTAGTACTGATTCAGCCCTAAAGACAAGGCAGAGGGAAGCTCTAGGCTTCCCTGTTCTTCTTGCCTATTACTTGAAGTATGATTTTCTCTTCTTGCATCTTAGTTCCTCTAGTTGTACATCAATTGAGGTCTCTAGGCGACTGAGTTACTTTTCAAAGGGAGGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

168

Amino Acids

18.84

Weight (kDa)

9.4

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34860 FvH4_5g34860 FvH4_5g34860
malus_domestica	MD08G1199400.v1.1 MD15G1386900.v1.1
prunus_persica	Prupe.1G533100_v2.0.a1
pyrus_communis	pycom08g17320 pycom15g34690
rosa_chinensis	RchiOBHm_Chr7g0235781
rosa_laevigata	RLG00000001140
rosa_multiflora	Rmu_sc0002543.1_g000002 Rmu_sc0008940.1_g000010
rosa_roxburghii	Rroxscaffold_3G00225640
rosa_rugosa	Rorug07G0292600 Rorug07G0292700
rosa_samantha	Rh7AG447600 Rh7BG419800 Rh7CG468100 Rh7DG436600
rosa_wichuraiana	Rw7G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 186
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	159, 257
AfaI	GTAC	3 cut(s)	61, 343, 454
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	110, 149, 412, 492
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	130, 170, 335, 377
AluI	AGCT	4 cut(s)	130, 170, 335, 377
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	127, 305, 332
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	139, 292, 344
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	472
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	5 cut(s)	194, 339, 380, 447, 471
BfmI	CTRYAG	2 cut(s)	69, 330
BfuAI	ACCTGC	2 cut(s)	106, 186
BisI	GCNGC	3 cut(s)	128, 306, 333
BlsI	GCNGC	3 cut(s)	129, 307, 334
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	82, 442
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
Bpu10I	CCTNAGC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	139, 292, 344
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	106, 186
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	2 cut(s)	105, 137
BspTNI	GGTCTC	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	452
BssMI	GATC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	3 cut(s)	105, 137, 431
BstAUI	TGTACA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	183, 254
BstDEI	CTNAG	3 cut(s)	186, 437, 479
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	69, 330
BstV1I	GCAGC	3 cut(s)	139, 292, 344
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 233
BveI	ACCTGC	2 cut(s)	106, 186
Cac8I	GCNNGC	2 cut(s)	183, 254
CaiI	CAGNNNCTG	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	60, 342, 453
CviJI	RGCY	8 cut(s)	130, 170, 191, 256, 335, 353, 377, 384
CviKI_1	RGCY	8 cut(s)	130, 170, 191, 256, 335, 353, 377, 384
CviQI	GTAC	3 cut(s)	60, 342, 453
DdeI	CTNAG	3 cut(s)	186, 437, 479
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	105, 137, 431
EarI	CTCTTC	3 cut(s)	105, 137, 431
Eco31I	GGTCTC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	159, 257
EcoRII	CCWGG	1 cut(s)	286
FaiI	YATR	1 cut(s)	417
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
Fnu4HI	GCNGC	3 cut(s)	128, 306, 333
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	128, 306, 333
FspBI	CTAG	5 cut(s)	194, 339, 380, 447, 471
GluI	GCNGC	3 cut(s)	128, 306, 333
HaeIII	GGCC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	65, 212, 347
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	139, 217
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	53, 181, 332, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	186, 437, 479
HpySE526I	ACGT	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	35
LguI	GCTCTTC	2 cut(s)	105, 137
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	9 cut(s)	42, 101, 191, 234, 238, 273, 300, 342, 402
Lsp1109I	GCAGC	3 cut(s)	139, 292, 344
LweI	GCATC	2 cut(s)	82, 442
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	5 cut(s)	194, 339, 380, 447, 471
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	2 cut(s)	144, 459
MnlI	CCTC	7 cut(s)	70, 81, 291, 363, 454, 457, 491
MroXI	GAANNNNTTC	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	35
PciSI	GCTCTTC	2 cut(s)	105, 137
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	65, 212, 347
PkrI	GCNGC	3 cut(s)	129, 307, 334
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	3 cut(s)	61, 343, 454
RsaNI	GTAC	3 cut(s)	60, 342, 453
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	2 cut(s)	105, 137
SatI	GCNGC	3 cut(s)	128, 306, 333
Sau3AI	GATC	1 cut(s)	35
ScaI	AGTACT	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	82, 442
SfcI	CTRYAG	2 cut(s)	69, 330
SmiMI	CAYNNNNRTG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	2 cut(s)	144, 459
SspMI	CTAG	5 cut(s)	194, 339, 380, 447, 471
StyD4I	CCNGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	283
TasI	AATT	2 cut(s)	144, 459
TatI	WGTACW	2 cut(s)	341, 452
TfiI	GAWTC	3 cut(s)	65, 212, 347
TscAI	CASTG	2 cut(s)	55, 240
TseI	GCWGC	3 cut(s)	127, 305, 332
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	55, 240
XapI	RAATTY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	5 cut(s)	194, 339, 380, 447, 471
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.