Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011568

Physical Location & Seq

Genomic Coordinates Reverse (-)

8920030 .. 8925316

Gene Structure 5287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGAAGGACGACCCAGAAGAGAAAGCTTCAGGCATGCACTCTGCATTTTCAGGTTTTGTGCTGGACCCTGAAAAATGTAGCAGGCTAAGTTTGGGAGAGAAGAGAGAACTAGTCCATGAGATTGCCCAATGGACAAAAGAAGCTCCAGAGATGCTTAGTTCCTTTAGCCGTAAGGAGCTTGTTGAAATGATCTGTGCCGAACTGGGTGAGGAAAGGAAGTACAGAGGATATACGAAACCTAGACTGATAGATCGCCTGCTAAAGTCAGTTTCTGAGAAATCAAAGAGTAATACTAACAATAATCCTGCATTTTCTCCGGCCAAAGTAGAAATTGGAAAGAAAAGGAAACAGAGCACAGAAGCTTCCTTTCAATCATTCACTGACCTAGGTCGTGTTTCCATGGTGACTAGTAAAGAAGAACATGCTAAATTCCAACTTTGTCAGAATGCAGCATGCAGAGCTCCCTTAAGTTCAGAGCAATCTTTTTGCAAGAGATGTTCTTGCTGTATCTGCCATCTTTTTGATGATAACAAGGATCCTAGTCTATGGTTGACTTGTGACTCTGATACTGCTGATGAGAATGGTCCATGTGGAATGTCATGCCATCTGGAATGTGCTCTCAAACATGAAAGAGCTGGGATTGTGAAGAATGGTTGCTGTCGCCAGTTGGATGGAAGCTTCTATTGCATTGCTTGTGGAAAGGTCAATGATTTAATGAGAACGTGGAGAAAACAATTAGTGATTGCCAAGGAAGCTAGAAGAGTTGATGCACTGTGTCTAAGGATTTCTTTATCTCACAAAATTCTTTTGCATACCAAGAAATACCAAAAATTGCAGAACATTGTAGAAACTGCCATAAAAAGCCTGAACGATGAATTAGGGCCGCTAGAACAGGTTTGTGGAAAGATGGCACGTGGAATTGTTAACAGGCTCTCTTGTGGTGCTGATGTTCAGAAACTGTGCGTTTCTGCAGTTGAATCTTTTGACTCGATGTTTTCTGATCCTTGTTTGGTCCATATGGAAAAGAAAGAACTACCAACTTGCCGCATCCGGTTTGAAGAGTCATCCCCTTCTTCCGTCATCATTGTGCTAGAATATGAGGATCATCTTTTTAACAATTTCTTAGGCTGCCGGCTGTGGCATCGCAAGTCTGATGAGAAGGATTATCCAGACCAACCTTCTTTCATTGTTTTAAGGCCAGAGAAGAAATTTGCTATTGCTGATCTGCATCCTGCAACTGAATATCTCTGCAAGGTATCTTTGTTTAGCAACACACAGACATTGGGTGTTTGGGAAGCTAAATGGGTGACGCCTGCATTGTATGATAGCTCTGTCGCATTAGAGAAACAGACAGGGGAAGAGAATACAGTAATTGGTCAAATTCTTTCCCATGAAGAATCAACCAATAGTAGTGACATCAAAGGAGATCATCCTGTGAAGTTTCAGTCATCAAATGGGATCAACAAGAACCAGAGAAAAGGGCTCTACCCACCGCCTCGTTCAATGGAAACTGCTTCATTGATCAAAGAAGCAGTGTCTCCATTGACACCTTGCAAATCCAATGGAATACATAAAGCACCGAGCATCAAATGTACAAAGCTAGTGGAGGAAAGTGATTATGAATATTCGGTGAGGGCAATCAAATGGTTAGAGCATGAGGGTCACATAGATGAAGATTTCAGAGTTAAGTTTCTAACTTGGTTCAGCCTGAAAGCTACTATGCAAGAGCGGAGAGTGGTCAGAGTGTATGTGGACACTTTCATTGACGATCCGTCAAGCTTGGCTGGGCAGCTCATCCATACCTTTGTGGAAGAGATTTGTTTTCAGCCAAAAGAATACCAGTTTCTCAGCCTGGGCCTTACACAAGGTTGTGCCATCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0036293 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051716 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

628

Amino Acids

71.07

Weight (kDa)

7.19

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	147 - 267	2.5e-35	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	350 - 437	4.2e-21	VIN3-like, fibronectin type-III domain
VIN3_C	PF23380	537 - 607	1.2e-36	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34860 FvH4_5g34860 FvH4_5g34860
malus_domestica	MD08G1199400.v1.1 MD15G1386900.v1.1
prunus_persica	Prupe.1G533100_v2.0.a1
pyrus_communis	pycom08g17320 pycom15g34690
rosa_chinensis	RchiOBHm_Chr7g0235781
rosa_laevigata	RLG00000001140
rosa_multiflora	Rmu_sc0002543.1_g000002 Rmu_sc0008940.1_g000010
rosa_roxburghii	Rroxscaffold_3G00225640
rosa_rugosa	Rorug07G0292600 Rorug07G0292700
rosa_samantha	Rh7AG447600 Rh7BG419800 Rh7CG468100 Rh7DG436600
rosa_wichuraiana	Rw7G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1729
AciI	CCGC	4 cut(s)	884, 1045, 1493, 1729
AclWI	GGATC	6 cut(s)	530, 543, 995, 1110, 1466, 1763
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	5 cut(s)	428, 801, 1208, 1380, 1880
AcuI	CTGAAG	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	914
AcyI	GRCGYC	1 cut(s)	1310
AfaI	GTAC	2 cut(s)	221, 1594
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	5 cut(s)	185, 371, 977, 1058, 1503
AhdI	GACNNNNNGTC	1 cut(s)	1771
AhlI	ACTAGT	2 cut(s)	109, 407
AjnI	CCWGG	1 cut(s)	1851
Alw21I	GWGCWC	3 cut(s)	356, 463, 619
Alw26I	GTCTC	1 cut(s)	1542
AlwI	GGATC	6 cut(s)	530, 543, 995, 1110, 1466, 1763
AlwNI	CAGNNNCTG	2 cut(s)	272, 958
AoxI	GGCC	4 cut(s)	318, 881, 1196, 1855
ApeKI	GCWGC	3 cut(s)	449, 1128, 1789
ApoI	RAATTY	5 cut(s)	428, 801, 1208, 1380, 1880
AspA2I	CCTAGG	1 cut(s)	385
AspS9I	GGNCC	5 cut(s)	64, 584, 881, 1012, 1855
AsuHPI	GGTGA	4 cut(s)	218, 415, 1318, 1642
AvaII	GGWCC	3 cut(s)	64, 584, 1012
AvrII	CCTAGG	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	463, 1485
BbrPI	CACGTG	1 cut(s)	914
Bbv12I	GWGCWC	3 cut(s)	356, 463, 619
BbvI	GCAGC	3 cut(s)	461, 1115, 1801
BccI	CCATC	5 cut(s)	522, 612, 665, 901, 1883
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	1853
BclI	TGATCA	1 cut(s)	1521
BcoDI	GTCTC	1 cut(s)	1542
BcuI	ACTAGT	2 cut(s)	109, 407
BfaI	CTAG	9 cut(s)	110, 240, 386, 408, 540, 756, 887, 1091, 1601
BfmI	CTRYAG	1 cut(s)	969
BfrI	CTTAAG	1 cut(s)	466
BisI	GCNGC	5 cut(s)	450, 884, 1045, 1129, 1790
BlnI	CCTAGG	1 cut(s)	385
BlsI	GCNGC	5 cut(s)	451, 885, 1046, 1130, 1791
Bme1390I	CCNGG	1 cut(s)	1853
Bme18I	GGWCC	3 cut(s)	64, 584, 1012
BmeRI	GACNNNNNGTC	1 cut(s)	1771
BmgT120I	GGNCC	5 cut(s)	64, 584, 881, 1012, 1855
BmiI	GGNNCC	2 cut(s)	66, 537
BmrFI	CCNGG	1 cut(s)	1853
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	6 cut(s)	141, 757, 1056, 1150, 1237, 1593
BmuI	ACTGGG	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	914
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaHI	GRCGYC	1 cut(s)	1310
BsaJI	CCNNGG	4 cut(s)	385, 399, 747, 1852
BsaWI	WCCGGW	1 cut(s)	1050
Bse118I	RCCGGY	1 cut(s)	1131
Bse1I	ACTGG	3 cut(s)	207, 664, 1840
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	1227
BseBI	CCWGG	1 cut(s)	1853
BseDI	CCNNGG	4 cut(s)	385, 399, 747, 1852
BseGI	GGATG	6 cut(s)	676, 1047, 1064, 1228, 1429, 1794
BseJI	GATNNNNATC	1 cut(s)	1227
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	264, 1861
BseNI	ACTGG	3 cut(s)	207, 664, 1840
BseXI	GCAGC	3 cut(s)	461, 1115, 1801
BseYI	CCCAGC	2 cut(s)	635, 1784
BshFI	GGCC	4 cut(s)	320, 883, 1198, 1857
BsiHKAI	GWGCWC	3 cut(s)	356, 463, 619
BsiSI	CCGG	3 cut(s)	317, 1051, 1132
BsmAI	GTCTC	1 cut(s)	1542
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	320, 883, 1198, 1857
Bsp1286I	GDGCHC	4 cut(s)	356, 463, 619, 1485
Bsp1407I	TGTACA	1 cut(s)	1592
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	4 cut(s)	884, 1045, 1493, 1729
BspANI	GGCC	4 cut(s)	320, 883, 1198, 1857
BspCNI	CTCAG	2 cut(s)	265, 1860
BspLI	GGNNCC	2 cut(s)	66, 537
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	6 cut(s)	530, 543, 995, 1110, 1466, 1763
BspTI	CTTAAG	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	1729
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	1131
BsrGI	TGTACA	1 cut(s)	1592
BsrI	ACTGG	3 cut(s)	207, 664, 1840
BssAI	RCCGGY	1 cut(s)	1131
BssECI	CCNNGG	4 cut(s)	385, 399, 747, 1852
BssNI	GRCGYC	1 cut(s)	1310
BssT1I	CCWWGG	3 cut(s)	385, 399, 747
Bst2UI	CCWGG	1 cut(s)	1853
Bst4CI	ACNGT	3 cut(s)	774, 960, 1369
Bst6I	CTCTTC	6 cut(s)	12, 95, 754, 1053, 1353, 1806
BstACI	GRCGYC	1 cut(s)	1310
BstAFI	CTTAAG	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	1592
BstBAI	YACGTR	1 cut(s)	914
BstC8I	GCNNGC	6 cut(s)	35, 83, 257, 454, 1133, 1314
BstDEI	CTNAG	6 cut(s)	86, 155, 273, 779, 1123, 1847
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	6 cut(s)	676, 1047, 1064, 1228, 1429, 1794
BstMAI	GTCTC	1 cut(s)	1542
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 510, 684, 752
BstNI	CCWGG	1 cut(s)	1853
BstNSI	RCATGY	3 cut(s)	37, 425, 456
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	1851
BstSFI	CTRYAG	1 cut(s)	969
BstV1I	GCAGC	3 cut(s)	461, 1115, 1801
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	320, 883, 1198, 1857
BtgI	CCRYGG	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	1127
BtsCI	GGATG	6 cut(s)	676, 1047, 1064, 1228, 1429, 1794
BtsI	GCAGTG	1 cut(s)	1539
BtsIMutI	CAGTG	3 cut(s)	378, 770, 1539
Cac8I	GCNNGC	6 cut(s)	35, 83, 257, 454, 1133, 1314
CaiI	CAGNNNCTG	2 cut(s)	272, 958
Cfr10I	RCCGGY	1 cut(s)	1131
Cfr13I	GGNCC	5 cut(s)	64, 584, 881, 1012, 1855
CseI	GACGC	1 cut(s)	1318
Csp6I	GTAC	2 cut(s)	220, 1593
CspCI	CAANNNNNGTGG	2 cut(s)	1584, 1619
CviQI	GTAC	2 cut(s)	220, 1593
DdeI	CTNAG	6 cut(s)	86, 155, 273, 779, 1123, 1847
DriI	GACNNNNNGTC	1 cut(s)	1771
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	6 cut(s)	12, 95, 754, 1053, 1353, 1806
Eam1105I	GACNNNNNGTC	1 cut(s)	1771
EarI	CTCTTC	6 cut(s)	12, 95, 754, 1053, 1353, 1806
Ecl136II	GAGCTC	1 cut(s)	461
Eco130I	CCWWGG	3 cut(s)	385, 399, 747
Eco24I	GRGCYC	2 cut(s)	463, 1485
Eco47I	GGWCC	3 cut(s)	64, 584, 1012
Eco53kI	GAGCTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	914
EcoICRI	GAGCTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	1851
EcoT14I	CCWWGG	3 cut(s)	385, 399, 747
EcoT38I	GRGCYC	2 cut(s)	463, 1485
ErhI	CCWWGG	3 cut(s)	385, 399, 747
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FauNDI	CATATG	1 cut(s)	1017
FbaI	TGATCA	1 cut(s)	1521
Fnu4HI	GCNGC	5 cut(s)	450, 884, 1045, 1129, 1790
FokI	GGATG	6 cut(s)	683, 1034, 1051, 1215, 1416, 1781
FriOI	GRGCYC	2 cut(s)	463, 1485
Fsp4HI	GCNGC	5 cut(s)	450, 884, 1045, 1129, 1790
FspBI	CTAG	9 cut(s)	110, 240, 386, 408, 540, 756, 887, 1091, 1601
GluI	GCNGC	5 cut(s)	450, 884, 1045, 1129, 1790
GsaI	CCCAGC	2 cut(s)	639, 1788
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	320, 883, 1198, 1857
HapII	CCGG	3 cut(s)	317, 1051, 1132
HgaI	GACGC	1 cut(s)	1318
Hin1I	GRCGYC	1 cut(s)	1310
HincII	GTYRAC	2 cut(s)	552, 925
HindII	GTYRAC	2 cut(s)	552, 925
HindIII	AAGCTT	4 cut(s)	24, 360, 676, 1777
HinfI	GANTC	5 cut(s)	560, 977, 986, 1061, 1397
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	3 cut(s)	317, 1051, 1132
HphI	GGTGA	4 cut(s)	218, 415, 1318, 1642
Hpy166II	GTNNAC	3 cut(s)	552, 925, 1753
Hpy188I	TCNGA	9 cut(s)	274, 444, 475, 565, 954, 1000, 1153, 1682, 1742
Hpy188III	TCNNGA	3 cut(s)	146, 608, 1169
Hpy8I	GTNNAC	3 cut(s)	552, 925, 1753
HpyAV	CCTTC	3 cut(s)	1080, 1153, 1188
HpyCH4III	ACNGT	3 cut(s)	774, 960, 1369
HpyCH4IV	ACGT	2 cut(s)	722, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 510, 684, 752
HpyF3I	CTNAG	6 cut(s)	86, 155, 273, 779, 1123, 1847
HpySE526I	ACGT	2 cut(s)	722, 913
Hsp92I	GRCGYC	1 cut(s)	1310
KroI	GCCGGC	1 cut(s)	1131
KroNI	GCCGGC	1 cut(s)	1133
Ksp22I	TGATCA	1 cut(s)	1521
KspAI	GTTAAC	1 cut(s)	925
LmnI	GCTCC	3 cut(s)	148, 175, 466
Lsp1109I	GCAGC	3 cut(s)	461, 1115, 1801
LweI	GCATC	6 cut(s)	141, 757, 1056, 1150, 1237, 1593
MaeI	CTAG	9 cut(s)	110, 240, 386, 408, 540, 756, 887, 1091, 1601
MaeII	ACGT	2 cut(s)	722, 913
MaeIII	GTNAC	5 cut(s)	403, 557, 1306, 1412, 1661
MbiI	CCGCTC	1 cut(s)	1729
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	4 cut(s)	356, 463, 619, 1485
MlyI	GAGTC	3 cut(s)	554, 980, 1070
MmeI	TCCRAC	2 cut(s)	457, 648
MnlI	CCTC	7 cut(s)	202, 218, 1093, 1506, 1600, 1626, 1651
MroNI	GCCGGC	1 cut(s)	1131
MseI	TTAA	6 cut(s)	467, 713, 924, 1113, 1193, 1686
MslI	CAYNNNNRTG	2 cut(s)	1085, 1668
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	3 cut(s)	317, 1051, 1132
MspR9I	CCNGG	1 cut(s)	1853
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	1853
MwoI	GCNNNNNNNGC	4 cut(s)	458, 510, 684, 752
NaeI	GCCGGC	1 cut(s)	1133
NcoI	CCATGG	1 cut(s)	399
NdeI	CATATG	1 cut(s)	1017
NgoMIV	GCCGGC	1 cut(s)	1131
NlaIV	GGNNCC	2 cut(s)	66, 537
NmuCI	GTSAC	5 cut(s)	403, 557, 1306, 1412, 1661
NspI	RCATGY	3 cut(s)	37, 425, 456
PaeI	GCATGC	2 cut(s)	37, 456
PctI	GAATGC	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	1133
PfeI	GAWTC	2 cut(s)	977, 1397
PkrI	GCNGC	5 cut(s)	451, 885, 1046, 1130, 1791
PleI	GAGTC	3 cut(s)	554, 980, 1069
PmaCI	CACGTG	1 cut(s)	914
PmlI	CACGTG	1 cut(s)	914
PpsI	GAGTC	3 cut(s)	554, 980, 1069
Ppu21I	YACGTR	1 cut(s)	914
PshAI	GACNNNNGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	1851
PspCI	CACGTG	1 cut(s)	914
PspFI	CCCAGC	2 cut(s)	635, 1784
PspGI	CCWGG	1 cut(s)	1851
PspN4I	GGNNCC	2 cut(s)	66, 537
PspPI	GGNCC	5 cut(s)	64, 584, 881, 1012, 1855
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	2 cut(s)	272, 958
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	221, 1594
RsaNI	GTAC	2 cut(s)	220, 1593
RseI	CAYNNNNRTG	2 cut(s)	1085, 1668
SacI	GAGCTC	1 cut(s)	463
SaqAI	TTAA	6 cut(s)	467, 713, 924, 1113, 1193, 1686
SatI	GCNGC	5 cut(s)	450, 884, 1045, 1129, 1790
Sau96I	GGNCC	5 cut(s)	64, 584, 881, 1012, 1855
SchI	GAGTC	3 cut(s)	554, 980, 1070
ScrFI	CCNGG	1 cut(s)	1853
SduI	GDGCHC	4 cut(s)	356, 463, 619, 1485
SfaNI	GCATC	6 cut(s)	141, 757, 1056, 1150, 1237, 1593
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	3 cut(s)	64, 584, 1012
SmiMI	CAYNNNNRTG	2 cut(s)	1085, 1668
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SpeI	ACTAGT	2 cut(s)	109, 407
SphI	GCATGC	2 cut(s)	37, 456
SsiI	CCGC	4 cut(s)	884, 1045, 1493, 1729
SspI	AATATT	1 cut(s)	1625
SspMI	CTAG	9 cut(s)	110, 240, 386, 408, 540, 756, 887, 1091, 1601
SstI	GAGCTC	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	1851
StyI	CCWWGG	3 cut(s)	385, 399, 747
TaaI	ACNGT	3 cut(s)	774, 960, 1369
TaiI	ACGT	2 cut(s)	725, 916
TaqI	TCGA	1 cut(s)	989
TatI	WGTACW	2 cut(s)	219, 1592
TauI	GCSGC	2 cut(s)	886, 1047
TfiI	GAWTC	2 cut(s)	977, 1397
Tru1I	TTAA	6 cut(s)	467, 713, 924, 1113, 1193, 1686
Tru9I	TTAA	6 cut(s)	467, 713, 924, 1113, 1193, 1686
TscAI	CASTG	3 cut(s)	385, 777, 1539
TseFI	GTSAC	5 cut(s)	403, 557, 1306, 1412, 1661
TseI	GCWGC	3 cut(s)	449, 1128, 1789
Tsp45I	GTSAC	5 cut(s)	403, 557, 1306, 1412, 1661
TspDTI	ATGAA	9 cut(s)	17, 642, 888, 1174, 1407, 1506, 1635, 1686, 1750
TspGWI	ACGGA	2 cut(s)	1066, 1761
TspRI	CASTG	3 cut(s)	385, 777, 1539
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	64, 584, 1012
XapI	RAATTY	5 cut(s)	428, 801, 1208, 1380, 1880
XceI	RCATGY	3 cut(s)	37, 425, 456
XmaJI	CCTAGG	1 cut(s)	385
XspI	CTAG	9 cut(s)	110, 240, 386, 408, 540, 756, 887, 1091, 1601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.