Prupe.1G547900_v2.0.a1

WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
44782742 .. 44794920
12179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G547900.1

Sequence Viewer

Length: 1542 bp
ATGTCGACCTTAGAAATTGAAGCTCGAGATGTCATCAAGATCGTGCTTCAATTTTGCAAAGAGAATTCCTTGCACCAAACCTTTCAAACATTACAGAGTGAGTGCCAGGTTTCTTTGAACACTGTCGACAGCGTTGAGACATTTATTGCTGATATAAATAGTGGAAGGTGGGATGCAATTTTGCCTCAAGTGGCCCAACTTAAGCTTCCCAGGAATAAGTTGGAGGATTTGTACGAGCAGATTGTACTGGAGATGATTGAACTTCGAGAATTAGATACTGCTCGTGCTATCTTAAGACAAACTCAGGTAATGGGTGTAATGAAGCAAGAACAACCTGAAAGATACTTGCGACTTGAGCATCTCCTTGTCAGAACTTATTTTGATCCAAATGAGGCTTATCAAGAGTCAACAAAAGAGAAGCGGCGTGCACAAATTGCTCAAGCACTTGCTGCAGAAGTTACTGTGGTGCCACCTTCTAGATTAATGGCTCTAATTGGTCAGGCTCTAAAGTGGCAGCAGCATCAAGGATTGCTTCCTCCGGGAACACAGTTTGACTTATTTCGGGGAACAGCTGCTATGAAACAGGATGTAGACGACTTGTATCCAACAACTCTTTCACACACAATAAAGTTTGGGACAAAAAGTCATGCAGAATATGCTCGGTTCTCACCAGATGGCCAGTTTCTTATCTCTTGCTCTATGGATGGGTTTATCGAGGTATGGGATTACATAAGTGGGAAACTCAAAAAGGATCTTCAGTACCAGGCTGATGAAACTTTCATGATGCATGAAGAGGCTGTCCTCTGTGTTGATTTTACCCGAGATTCAGAGATGATTGCTTCTGGATCACAAGATGGAAAGATCAAAGTTTGGCGTATCAGGACTGGTCAGTGCTTGCGTCGTCTTGAACGTGCACATTCACGGGGTGTCACCAGCGTTTCTTTCTCTCGGGATGGAAGCCAGATACTTAGTACATCATTTGACAACACTGCAAGAATCCATGGCCTAAAATCCGGGAAGTTGTTGAAAGAATTTCGTGGCCATTCTTATTATGTAAATGATGCAATATTTACAAGTGATGGAACTCGTGTAATTACTGCATCTAGTGATGGCACAGTCAAGGTCTGGGATTTGAAGACTACTGACTGTCTACAGACATTTAAACCACCTCCTCCTTTAAAGGGAACTGATGCTGCTGTGAATTCAGTTCATCTTTACCCAAAAAATACGGATCACATCATTGTATGCAATAGGACATCATCAATATATGTCATGACACTTCAAGGACAGGTTGTGAAGAGCTTTTCATCTGGTAAAAAAGAAGGTGGAGATTTTTTGGCAGCTTGTGTGTCACCAAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGAATCTATACTGTTTCAGTAACCAGTCTGGCAAATTAGAGCATCTAATGAAGGTCCATGAAAAGACAGTAATTGGCTTAACTCATCATCCTCACAGGAATCTTCTAGCCACATATAGTGAAGACTGCACAATGAAGTTATGGAAGCCTTGA

Protein Analysis

514

Amino Acids

58.13

Weight (kDa)

6.97

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 466
AccI GTMKAC 4 cut(s) 5, 126, 591, 1150
AciI CCGC 1 cut(s) 421
AclWI GGATC 4 cut(s) 377, 759, 853, 1239
AcoI YGGCCR 2 cut(s) 676, 1039
AcsI RAATTY 3 cut(s) 64, 1031, 1201
AcuI CTGAAG 1 cut(s) 740
AdeI CACNNNGTG 1 cut(s) 926
AfaI GTAC 4 cut(s) 233, 246, 761, 973
AfiI CCNNNNNNNGG 1 cut(s) 1181
AflII CTTAAG 2 cut(s) 200, 292
AgsI TTSAA 9 cut(s) 20, 50, 86, 118, 260, 908, 1027, 1135, 1283
AhdI GACNNNNNGTC 1 cut(s) 642
AjnI CCWGG 3 cut(s) 105, 209, 762
AjuI GAANNNNNNNTTGG 4 cut(s) 189, 221, 598, 630
AluBI AGCT 5 cut(s) 23, 205, 572, 1302, 1343
AluI AGCT 5 cut(s) 23, 205, 572, 1302, 1343
Alw21I GWGCWC 2 cut(s) 430, 916
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 2 cut(s) 426, 912
AlwI GGATC 4 cut(s) 377, 759, 853, 1239
Ama87I CYCGRG 3 cut(s) 24, 819, 948
AoxI GGCC 4 cut(s) 192, 676, 1003, 1039
ApaLI GTGCAC 2 cut(s) 426, 912
ApeKI GCWGC 6 cut(s) 449, 514, 517, 572, 1193, 1340
ApoI RAATTY 3 cut(s) 64, 1031, 1201
AseI ATTAAT 1 cut(s) 482
AspS9I GGNCC 2 cut(s) 193, 1444
AsuC2I CCSGG 2 cut(s) 540, 1015
AsuHPI GGTGA 4 cut(s) 660, 922, 1344, 1394
AvaI CYCGRG 3 cut(s) 24, 819, 948
AvaII GGWCC 1 cut(s) 1444
BaeGI GKGCMC 2 cut(s) 430, 916
BalI TGGCCA 2 cut(s) 678, 1041
BanI GGYRCC 1 cut(s) 466
BauI CACGAG 2 cut(s) 282, 1086
BbsI GAAGAC 3 cut(s) 1142, 1392, 1518
Bbv12I GWGCWC 2 cut(s) 430, 916
BbvI GCAGC 6 cut(s) 436, 526, 529, 559, 1180, 1352
BccI CCATC 6 cut(s) 668, 698, 848, 947, 1073, 1103
BciT130I CCWGG 3 cut(s) 107, 211, 764
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 2 cut(s) 540, 1015
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 477, 1104, 1496
BfmI CTRYAG 2 cut(s) 450, 1151
BfrI CTTAAG 2 cut(s) 200, 292
BfuI GTATCC 1 cut(s) 612
BisI GCNGC 7 cut(s) 422, 450, 515, 518, 573, 1194, 1341
BlsI GCNGC 7 cut(s) 423, 451, 516, 519, 574, 1195, 1342
Bme1390I CCNGG 5 cut(s) 107, 211, 540, 764, 1015
Bme18I GGWCC 1 cut(s) 1444
BmeRI GACNNNNNGTC 1 cut(s) 642
BmeT110I CYCGRG 3 cut(s) 24, 819, 948
BmgT120I GGNCC 2 cut(s) 193, 1444
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 5 cut(s) 107, 211, 540, 764, 1015
BmsI GCATC 8 cut(s) 163, 367, 529, 774, 1051, 1109, 1180, 1441
BpiI GAAGAC 3 cut(s) 1142, 1392, 1518
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 3 cut(s) 171, 374, 423
BpuMI CCSGG 2 cut(s) 540, 1015
BsaJI CCNNGG 2 cut(s) 209, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 1181
Bse1I ACTGG 4 cut(s) 252, 679, 889, 1414
BseBI CCWGG 3 cut(s) 107, 211, 764
BseDI CCNNGG 2 cut(s) 209, 1000
BseGI GGATG 5 cut(s) 178, 592, 709, 958, 1477
BseLI CCNNNNNNNGG 1 cut(s) 1181
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 4 cut(s) 252, 679, 889, 1414
BseRI GAGGAG 1 cut(s) 1161
BseSI GKGCMC 2 cut(s) 430, 916
BseXI GCAGC 6 cut(s) 436, 526, 529, 559, 1180, 1352
BsgI GTGCAG 1 cut(s) 1501
BshFI GGCC 4 cut(s) 194, 678, 1005, 1041
BshNI GGYRCC 1 cut(s) 466
BsiHKAI GWGCWC 2 cut(s) 430, 916
BsiHKCI CYCGRG 3 cut(s) 24, 819, 948
BsiSI CCGG 2 cut(s) 539, 1014
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 1181
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 4 cut(s) 194, 678, 1005, 1041
BsoBI CYCGRG 3 cut(s) 24, 819, 948
Bsp1286I GDGCHC 2 cut(s) 430, 916
Bsp143I GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
Bsp19I CCATGG 1 cut(s) 1000
BspACI CCGC 1 cut(s) 421
BspANI GGCC 4 cut(s) 194, 678, 1005, 1041
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 2 cut(s) 780, 1272
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 4 cut(s) 377, 759, 853, 1239
BspQI GCTCTTC 1 cut(s) 1292
BspT107I GGYRCC 1 cut(s) 466
BspTI CTTAAG 2 cut(s) 200, 292
BsrI ACTGG 4 cut(s) 252, 679, 889, 1414
BssECI CCNNGG 2 cut(s) 209, 1000
BssMI GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
BssSI CACGAG 2 cut(s) 282, 1086
BssT1I CCWWGG 1 cut(s) 1000
Bst2BI CACGAG 2 cut(s) 282, 1086
Bst2UI CCWGG 3 cut(s) 107, 211, 764
Bst4CI ACNGT 8 cut(s) 124, 463, 549, 1117, 1148, 1376, 1403, 1459
Bst6I CTCTTC 2 cut(s) 786, 1292
BstAFI CTTAAG 2 cut(s) 200, 292
BstAPI GCANNNNNTGC 3 cut(s) 434, 449, 656
BstC8I GCNNGC 2 cut(s) 426, 896
BstDEI CTNAG 3 cut(s) 10, 303, 968
BstDSI CCRYGG 1 cut(s) 1000
BstF5I GGATG 5 cut(s) 178, 592, 709, 958, 1477
BstKTI GATC 6 cut(s) 42, 385, 754, 848, 864, 1234
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
BstMWI GCNNNNNNNGC 4 cut(s) 355, 434, 449, 656
BstNI CCWGG 3 cut(s) 107, 211, 764
BstSCI CCNGG 5 cut(s) 105, 209, 538, 762, 1013
BstSFI CTRYAG 2 cut(s) 450, 1151
BstSLI GKGCMC 2 cut(s) 430, 916
BstV1I GCAGC 6 cut(s) 436, 526, 529, 559, 1180, 1352
BstV2I GAAGAC 3 cut(s) 1142, 1392, 1518
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 4 cut(s) 194, 678, 1005, 1041
BtgI CCRYGG 1 cut(s) 1000
BtsCI GGATG 5 cut(s) 178, 592, 709, 958, 1477
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 3 cut(s) 120, 896, 987
Cac8I GCNNGC 2 cut(s) 426, 896
CciI TCATGA 2 cut(s) 780, 1272
Cfr13I GGNCC 2 cut(s) 193, 1444
CseI GACGC 1 cut(s) 887
Csp6I GTAC 4 cut(s) 232, 245, 760, 972
CviAII CATG 6 cut(s) 647, 781, 788, 1001, 1273, 1448
CviQI GTAC 4 cut(s) 232, 245, 760, 972
DdeI CTNAG 3 cut(s) 10, 303, 968
DpnI GATC 6 cut(s) 41, 384, 753, 847, 863, 1233
DpnII GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
DraI TTTAAA 2 cut(s) 1162, 1179
DraIII CACNNNGTG 1 cut(s) 926
DriI GACNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 2 cut(s) 676, 1039
Eam1104I CTCTTC 2 cut(s) 786, 1292
Eam1105I GACNNNNNGTC 1 cut(s) 642
EarI CTCTTC 2 cut(s) 786, 1292
Eco130I CCWWGG 1 cut(s) 1000
Eco47I GGWCC 1 cut(s) 1444
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 3 cut(s) 24, 819, 948
EcoRI GAATTC 2 cut(s) 64, 1201
EcoRII CCWGG 3 cut(s) 105, 209, 762
EcoT14I CCWWGG 1 cut(s) 1000
EcoT22I ATGCAT 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 1000
FaeI CATG 6 cut(s) 650, 784, 791, 1004, 1276, 1451
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 649
FatI CATG 6 cut(s) 646, 780, 787, 1000, 1272, 1447
FblI GTMKAC 4 cut(s) 5, 126, 591, 1150
Fnu4HI GCNGC 7 cut(s) 422, 450, 515, 518, 573, 1194, 1341
FokI GGATG 5 cut(s) 185, 599, 716, 965, 1464
Fsp4HI GCNGC 7 cut(s) 422, 450, 515, 518, 573, 1194, 1341
FspBI CTAG 3 cut(s) 477, 1104, 1496
GluI GCNGC 7 cut(s) 422, 450, 515, 518, 573, 1194, 1341
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 4 cut(s) 194, 678, 1005, 1041
HapII CCGG 2 cut(s) 539, 1014
HgaI GACGC 1 cut(s) 887
Hin1II CATG 6 cut(s) 650, 784, 791, 1004, 1276, 1451
HincII GTYRAC 3 cut(s) 6, 127, 408
HindII GTYRAC 3 cut(s) 6, 127, 408
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 5 cut(s) 404, 824, 996, 1393, 1489
HpaII CCGG 2 cut(s) 539, 1014
HphI GGTGA 4 cut(s) 660, 922, 1344, 1394
Hpy166II GTNNAC 7 cut(s) 6, 127, 408, 428, 592, 914, 1151
Hpy188I TCNGA 2 cut(s) 371, 829
Hpy8I GTNNAC 7 cut(s) 6, 127, 408, 428, 592, 914, 1151
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 4 cut(s) 159, 483, 1316, 1435
HpyCH4III ACNGT 8 cut(s) 124, 463, 549, 1117, 1148, 1376, 1403, 1459
HpyCH4IV ACGT 1 cut(s) 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 355, 434, 449, 656
HpyF3I CTNAG 3 cut(s) 10, 303, 968
HpySE526I ACGT 1 cut(s) 910
Hsp92II CATG 6 cut(s) 650, 784, 791, 1004, 1276, 1451
Kzo9I GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
LguI GCTCTTC 1 cut(s) 1292
Lsp1109I GCAGC 6 cut(s) 436, 526, 529, 559, 1180, 1352
LweI GCATC 8 cut(s) 163, 367, 529, 774, 1051, 1109, 1180, 1441
MaeI CTAG 3 cut(s) 477, 1104, 1496
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 4 cut(s) 457, 928, 1350, 1409
MalI GATC 6 cut(s) 41, 384, 753, 847, 863, 1233
MboI GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
MboII GAAGA 7 cut(s) 746, 803, 1147, 1309, 1397, 1484, 1523
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 430, 916
MlsI TGGCCA 2 cut(s) 678, 1041
MluNI TGGCCA 2 cut(s) 678, 1041
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 2 cut(s) 201, 629
Mox20I TGGCCA 2 cut(s) 678, 1041
Mph1103I ATGCAT 1 cut(s) 789
MscI TGGCCA 2 cut(s) 678, 1041
MseI TTAA 6 cut(s) 201, 293, 482, 1161, 1178, 1469
Msp20I TGGCCA 2 cut(s) 678, 1041
MspA1I CMGCKG 1 cut(s) 572
MspCI CTTAAG 2 cut(s) 200, 292
MspI CCGG 2 cut(s) 539, 1014
MspR9I CCNGG 5 cut(s) 107, 211, 540, 764, 1015
MvaI CCWGG 3 cut(s) 107, 211, 764
MwoI GCNNNNNNNGC 4 cut(s) 355, 434, 449, 656
NciI CCSGG 2 cut(s) 540, 1015
NcoI CCATGG 1 cut(s) 1000
NdeII GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
NlaIII CATG 6 cut(s) 650, 784, 791, 1004, 1276, 1451
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 928, 1350
NsiI ATGCAT 1 cut(s) 789
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 2 cut(s) 780, 1272
PciSI GCTCTTC 1 cut(s) 1292
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PfeI GAWTC 4 cut(s) 824, 996, 1393, 1489
PfoI TCCNGGA 2 cut(s) 538, 1013
PkrI GCNGC 7 cut(s) 423, 451, 516, 519, 574, 1195, 1342
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 482
Psp6I CCWGG 3 cut(s) 105, 209, 762
PspGI CCWGG 3 cut(s) 105, 209, 762
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 2 cut(s) 193, 1444
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 4 cut(s) 233, 246, 761, 973
RsaNI GTAC 4 cut(s) 232, 245, 760, 972
SalI GTCGAC 2 cut(s) 4, 125
SapI GCTCTTC 1 cut(s) 1292
SaqAI TTAA 6 cut(s) 201, 293, 482, 1161, 1178, 1469
SatI GCNGC 7 cut(s) 422, 450, 515, 518, 573, 1194, 1341
Sau3AI GATC 6 cut(s) 39, 382, 751, 845, 861, 1231
Sau96I GGNCC 2 cut(s) 193, 1444
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 5 cut(s) 107, 211, 540, 764, 1015
SduI GDGCHC 2 cut(s) 430, 916
SfaNI GCATC 8 cut(s) 163, 367, 529, 774, 1051, 1109, 1180, 1441
SfcI CTRYAG 2 cut(s) 450, 1151
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 1444
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 6 cut(s) 24, 186, 200, 292, 353, 438
SmoI CTYRAG 6 cut(s) 24, 186, 200, 292, 353, 438
SsiI CCGC 1 cut(s) 421
SspI AATATT 1 cut(s) 1068
SspMI CTAG 3 cut(s) 477, 1104, 1496
StyD4I CCNGG 5 cut(s) 105, 209, 538, 762, 1013
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 8 cut(s) 124, 463, 549, 1117, 1148, 1376, 1403, 1459
TaiI ACGT 1 cut(s) 913
TaqI TCGA 5 cut(s) 5, 25, 126, 265, 714
TatI WGTACW 2 cut(s) 244, 971
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 4 cut(s) 824, 996, 1393, 1489
Tru1I TTAA 6 cut(s) 201, 293, 482, 1161, 1178, 1469
Tru9I TTAA 6 cut(s) 201, 293, 482, 1161, 1178, 1469
TscAI CASTG 3 cut(s) 127, 896, 994
TseFI GTSAC 2 cut(s) 928, 1350
TseI GCWGC 6 cut(s) 449, 514, 517, 572, 1193, 1340
Tsp45I GTSAC 2 cut(s) 928, 1350
TspGWI ACGGA 1 cut(s) 1244
TspRI CASTG 3 cut(s) 127, 896, 994
Vha464I CTTAAG 2 cut(s) 200, 292
VneI GTGCAC 2 cut(s) 426, 912
VpaK11BI GGWCC 1 cut(s) 1444
VspI ATTAAT 1 cut(s) 482
XapI RAATTY 3 cut(s) 64, 1031, 1201
XbaI TCTAGA 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 1362
XhoI CTCGAG 1 cut(s) 24
XmiI GTMKAC 4 cut(s) 5, 126, 591, 1150
XspI CTAG 3 cut(s) 477, 1104, 1496
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.