Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008538

Physical Location & Seq

Genomic Coordinates Reverse (-)

18779535 .. 18783435

Gene Structure 3901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTGCATCTGGGTCACAAGATGGAAAGATCAAAGTTTGGCGTATTAGGACTGGGCAGTGCTTGCGCCGTCTTGAACGTGCACATTCACGGGGTGTCACCAGTGTTTCTTTCTCTCGGGATGGAAGCCAGTTACTTAGTACATCATTTGACAGCACTGCAAAAATCCATGGCCTAAAATCTGGGAAGATGTTGAAAGAATTTCGTGGGCATACATCTTATGTAAATGATGGAATCTTTACTAGTGATGGAGCTCGTGTAATTACTGCATCTAGCGATTGCACAGTCAAGGTATGGGATTTGAAGACTACTGACTGTCTACAGACATTCAAGCCACCTCCTCCTTTAAGGGGAGGTGATGCTTCTGTGAATTCTGTTCATCTTTACCCAAAAAATACTGATCACATCATTGTATGTAATAAGACGTCATCTATTTATGTCATGACACTTCAAGGACAGGTTGTGAAGAGCTTTTCATCTGGTAAAAAAGAAGGCGGAGATTTTTTGTCAGCTTGTGTGTCACCAAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGAATATGTACTGTTTCAGTCACCAATCTGGTAATTTAGAGCATCTAATGAAGGTCCACGAAAAGGAGGTAATTGGCATCAGCCATCATCCTCACAGGAATATTGTCGCTACATACGGCGAAGACTGCACACTGAAGTTATGGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000381 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0080090 GO:0090304 GO:1901360 GO:1902494 GO:1903311 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

237

Amino Acids

26.15

Weight (kDa)

9.17

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73720
fragaria_vesca	FvH4_5g32860
malus_domestica	MD08G1215900.v1.1 MD15G1400300.v1.1
prunus_persica	Prupe.1G547900_v2.0.a1
pyrus_communis	pycom08g18700 pycom15g35890
rosa_chinensis	RchiOBHm_Chr6g0269341 RchiOBHm_Chr7g0230731
rosa_laevigata	RLG00000001479
rosa_multiflora	Rmu_sc0007883.1_g000005
rosa_roxburghii	Rroxscaffold_3G00229780
rosa_rugosa	Rorug07G0262400
rosa_samantha	Rh3AG002100 Rh3BG001600 Rh3CG001900 Rh3DG002000 Rh7AG414100 Rh7BG391300 Rh7CG433000 Rh7DG409700
rosa_wichuraiana	Rw7G034230 Rw7G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	319
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	200, 370
AcyI	GRCGYC	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	142, 569
AfiI	CCNNNNNNNGG	2 cut(s)	350, 622
AgsI	TTSAA	5 cut(s)	77, 196, 304, 331, 452
AhlI	ACTAGT	1 cut(s)	242
AluBI	AGCT	3 cut(s)	254, 471, 512
AluI	AGCT	3 cut(s)	254, 471, 512
Alw21I	GWGCWC	2 cut(s)	85, 256
Alw44I	GTGCAC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	200, 370
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	613
AsuHPI	GGTGA	5 cut(s)	91, 368, 513, 563, 572
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	3 cut(s)	311, 561, 687
Bbv12I	GWGCWC	2 cut(s)	85, 256
BccI	CCATC	5 cut(s)	17, 116, 224, 242, 651
BceAI	ACGGC	2 cut(s)	54, 691
BclI	TGATCA	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	2 cut(s)	243, 273
BfmI	CTRYAG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	613
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	5 cut(s)	17, 278, 349, 610, 645
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	3 cut(s)	311, 561, 687
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 622
Bse1I	ACTGG	3 cut(s)	58, 102, 130
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	127, 646
BseLI	CCNNNNNNNGG	2 cut(s)	350, 622
BseNI	ACTGG	3 cut(s)	58, 102, 130
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	85, 256
BsiHKCI	CYCGRG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	350, 622
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	85, 256
Bsp143I	GATC	2 cut(s)	30, 400
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	441
BspQI	GCTCTTC	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	58, 102, 130
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	30, 400
BssNI	GRCGYC	1 cut(s)	425
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	286, 317, 545, 572
Bst6I	CTCTTC	1 cut(s)	461
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	127, 646
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	33, 403
BstMBI	GATC	2 cut(s)	30, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 684
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	85
BstV2I	GAAGAC	3 cut(s)	311, 561, 687
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	127, 646
BtsI	GCAGTG	2 cut(s)	65, 156
BtsIMutI	CAGTG	4 cut(s)	65, 109, 156, 689
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	141, 568
CviAII	CATG	2 cut(s)	170, 442
CviJI	RGCY	8 cut(s)	129, 174, 254, 334, 471, 512, 642, 706
CviKI_1	RGCY	8 cut(s)	129, 174, 254, 334, 471, 512, 642, 706
CviQI	GTAC	2 cut(s)	141, 568
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	32, 402
DpnII	GATC	2 cut(s)	30, 400
DraIII	CACNNNGTG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	173, 445
FatI	CATG	2 cut(s)	169, 441
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	319
FokI	GGATG	2 cut(s)	134, 633
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	2 cut(s)	243, 273
GlaI	GCGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	173, 445
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	5 cut(s)	91, 368, 513, 563, 572
Hpy166II	GTNNAC	3 cut(s)	83, 320, 616
Hpy188III	TCNNGA	3 cut(s)	74, 119, 442
Hpy8I	GTNNAC	3 cut(s)	83, 320, 616
HpyAV	CCTTC	2 cut(s)	485, 604
HpyCH4III	ACNGT	4 cut(s)	286, 317, 545, 572
HpyCH4IV	ACGT	2 cut(s)	79, 425
HpyCH4V	TGCA	6 cut(s)	8, 83, 161, 269, 282, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 684
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	79, 425
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	173, 445
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	30, 400
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	39, 115, 143, 168, 443, 465, 544, 573, 640
LweI	GCATC	5 cut(s)	17, 278, 349, 610, 645
MaeI	CTAG	2 cut(s)	243, 273
MaeII	ACGT	2 cut(s)	79, 425
MaeIII	GTNAC	5 cut(s)	15, 97, 132, 519, 578
MalI	GATC	2 cut(s)	32, 402
MboI	GATC	2 cut(s)	30, 400
MboII	GAAGA	5 cut(s)	199, 316, 478, 566, 692
MhlI	GDGCHC	2 cut(s)	85, 256
MluCI	AATT	5 cut(s)	200, 261, 370, 592, 630
MnlI	CCTC	5 cut(s)	347, 348, 351, 619, 660
MseI	TTAA	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	64, 684
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	30, 400
NlaIII	CATG	2 cut(s)	173, 445
NmuCI	GTSAC	4 cut(s)	15, 97, 519, 578
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	613
RsaI	GTAC	2 cut(s)	142, 569
RsaNI	GTAC	2 cut(s)	141, 568
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	347
Sau3AI	GATC	2 cut(s)	30, 400
Sau96I	GGNCC	1 cut(s)	613
SduI	GDGCHC	2 cut(s)	85, 256
SfaNI	GCATC	5 cut(s)	17, 278, 349, 610, 645
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	613
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	5 cut(s)	200, 261, 370, 592, 630
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	243, 273
SstI	GAGCTC	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	4 cut(s)	286, 317, 545, 572
TaiI	ACGT	2 cut(s)	82, 428
TasI	AATT	5 cut(s)	200, 261, 370, 592, 630
TatI	WGTACW	2 cut(s)	140, 567
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	4 cut(s)	65, 109, 163, 696
TseFI	GTSAC	4 cut(s)	15, 97, 519, 578
Tsp45I	GTSAC	4 cut(s)	15, 97, 519, 578
TspDTI	ATGAA	3 cut(s)	368, 465, 623
TspRI	CASTG	4 cut(s)	65, 109, 163, 696
VneI	GTGCAC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	2 cut(s)	200, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	2 cut(s)	243, 273
ZraI	GACGTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.