Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008538

Physical Location & Seq

Genomic Coordinates Reverse (-)

26605835 .. 26607332

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTAAGGGGTTCATTGCCATCTCCGGCAAGCCAAGTTGATAACCCACTGAAGTTTGGCTCTCCGCCGCCGTCGTCAACACCCGAATTGATTCCGGTTGCAACCGAGGCTTCTTTGTCATCACTTATTCCTGCTGCTAATGGTATTATTCCTAAAACCCCTGTGGATAGTGATTTAATTTTGTCTTCCACTGATGTGATATTGGGATTTAGTGATCATGCTAGTATGAATCATGTTGTGGGTAATACAGCTACTACTTCAATTGCTACATTAGTTTGTGGTGATAAAAGTATGGAAGTTGTGGGTGGTGTCAATACTAGTCGGAAAATAGATAGAAAAGGTGTTATAGATGGATTCAACCCAGATAAAAGCAAGGAATTTCAGGAGTTGCTTTATGATAGTGCATTCAATATAGTTGGCTATAATCCCTTTGTCAATTTAGAGTGTGGACCAACAAATTCGGCTTGGCTTGAGAACATTCAAAGGAGTGCAGTTTTGCCTCAAGTGGCTCAACTTAAGCTGCCTAGGAATAAATGGGAGAGTTTGTATGAGCAGATGGTACTGGAAATGATTGAACTTCTAGACATAGAGACTGCTCATTCAATTTTAAGAAACACTCAGGTAACGTGTGTATTGAAGCAAGAACAACCGGAAAGATATTTGCAACTGCAGCATCTCCATGCTGGAACTTATTTCGATCTAAATGAGGCTTATCCAGATTCAACAAAGGAGCAACGACATGCACAAACTGCTCGAGCACTTGCTGCAGAGGTTATTGTGGTGCCACCTTCAAGATTAATGATTCTAATCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000381 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0080090 GO:0090304 GO:1901360 GO:1902494 GO:1903311 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

271

Amino Acids

29.65

Weight (kDa)

5.15

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73720
fragaria_vesca	FvH4_5g32860
malus_domestica	MD08G1215900.v1.1 MD15G1400300.v1.1
prunus_persica	Prupe.1G547900_v2.0.a1
pyrus_communis	pycom08g18700 pycom15g35890
rosa_chinensis	RchiOBHm_Chr6g0269341 RchiOBHm_Chr7g0230731
rosa_laevigata	RLG00000001479
rosa_multiflora	Rmu_sc0007883.1_g000005
rosa_roxburghii	Rroxscaffold_3G00229780
rosa_rugosa	Rorug07G0262400
rosa_samantha	Rh3AG002100 Rh3BG001600 Rh3CG001900 Rh3DG002000 Rh7AG414100 Rh7BG391300 Rh7CG433000 Rh7DG409700
rosa_wichuraiana	Rw7G034230 Rw7G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	781
AciI	CCGC	2 cut(s)	65, 68
AcsI	RAATTY	2 cut(s)	377, 457
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	561
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	9 cut(s)	261, 358, 409, 482, 575, 603, 637, 723, 792
AhlI	ACTAGT	1 cut(s)	317
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	251, 520
AluI	AGCT	2 cut(s)	251, 520
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	753
ApeKI	GCWGC	4 cut(s)	134, 520, 670, 764
ApoI	RAATTY	2 cut(s)	377, 457
AseI	ATTAAT	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	449
AvrII	CCTAGG	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	4 cut(s)	121, 507, 682, 751
BccI	CCATC	3 cut(s)	28, 344, 550
BceAI	ACGGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	584
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	4 cut(s)	222, 318, 525, 581
BfmI	CTRYAG	2 cut(s)	668, 765
BfrI	CTTAAG	1 cut(s)	515
BisI	GCNGC	5 cut(s)	68, 135, 521, 671, 765
BlnI	CCTAGG	1 cut(s)	524
BlsI	GCNGC	5 cut(s)	69, 136, 522, 672, 766
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	783
BmsI	GCATC	1 cut(s)	682
BpiI	GAAGAC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	486, 491
BsaBI	GATNNNNATC	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	105, 524
BsaWI	WCCGGW	2 cut(s)	94, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	806
BseDI	CCNNGG	2 cut(s)	105, 524
BseJI	GATNNNNATC	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	567
BseXI	GCAGC	4 cut(s)	121, 507, 682, 751
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	26, 95, 650
BsmAI	GTCTC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	2 cut(s)	214, 697
BspACI	CCGC	2 cut(s)	65, 68
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	783
BspMAI	CTGCAG	2 cut(s)	672, 769
BspT107I	GGYRCC	1 cut(s)	781
BspTI	CTTAAG	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	105, 524
BssMI	GATC	2 cut(s)	214, 697
BssT1I	CCWWGG	1 cut(s)	524
BstAFI	CTTAAG	1 cut(s)	515
BstAPI	GCANNNNNTGC	2 cut(s)	749, 764
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	618
BstKTI	GATC	2 cut(s)	217, 700
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	2 cut(s)	214, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 670, 749, 764
BstNSI	RCATGY	1 cut(s)	743
BstSFI	CTRYAG	2 cut(s)	668, 765
BstV1I	GCAGC	4 cut(s)	121, 507, 682, 751
BstV2I	GAAGAC	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	47, 189
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	4 cut(s)	218, 233, 680, 740
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	2 cut(s)	216, 699
DpnII	GATC	2 cut(s)	214, 697
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	4 cut(s)	221, 236, 683, 743
FatI	CATG	4 cut(s)	217, 232, 679, 739
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	68, 135, 521, 671, 765
Fsp4HI	GCNGC	5 cut(s)	68, 135, 521, 671, 765
FspBI	CTAG	4 cut(s)	222, 318, 525, 581
GluI	GCNGC	5 cut(s)	68, 135, 521, 671, 765
HapII	CCGG	3 cut(s)	26, 95, 650
Hin1II	CATG	4 cut(s)	221, 236, 683, 743
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	5 cut(s)	91, 229, 354, 719, 802
HpaII	CCGG	3 cut(s)	26, 95, 650
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	78, 449
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	383, 581, 716, 792
Hpy8I	GTNNAC	2 cut(s)	78, 449
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	798
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	101, 404, 491, 664, 670, 743, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 670, 749, 764
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	4 cut(s)	221, 236, 683, 743
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 697
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	4 cut(s)	121, 507, 682, 751
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	4 cut(s)	222, 318, 525, 581
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	216, 699
MboI	GATC	2 cut(s)	214, 697
MboII	GAAGA	1 cut(s)	177
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	7 cut(s)	86, 177, 261, 377, 436, 457, 603
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	100, 510, 700, 763
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	5 cut(s)	5, 176, 516, 608, 797
MslI	CAYNNNNRTG	2 cut(s)	194, 678
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	3 cut(s)	26, 95, 650
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	107, 670, 749, 764
NdeII	GATC	2 cut(s)	214, 697
NlaIII	CATG	4 cut(s)	221, 236, 683, 743
NlaIV	GGNNCC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	753
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	5 cut(s)	91, 229, 354, 719, 802
PkrI	GCNGC	5 cut(s)	69, 136, 522, 672, 766
PshBI	ATTAAT	1 cut(s)	797
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	753
PstI	CTGCAG	2 cut(s)	672, 769
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	2 cut(s)	194, 678
SaqAI	TTAA	5 cut(s)	5, 176, 516, 608, 797
SatI	GCNGC	5 cut(s)	68, 135, 521, 671, 765
Sau3AI	GATC	2 cut(s)	214, 697
Sau96I	GGNCC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	7 cut(s)	253, 343, 522, 624, 629, 774, 790
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	2 cut(s)	668, 765
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	2 cut(s)	194, 678
SmlI	CTYRAG	4 cut(s)	470, 501, 515, 753
SmoI	CTYRAG	4 cut(s)	470, 501, 515, 753
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	7 cut(s)	86, 177, 261, 377, 436, 457, 603
SsiI	CCGC	2 cut(s)	65, 68
SspMI	CTAG	4 cut(s)	222, 318, 525, 581
StyI	CCWWGG	1 cut(s)	524
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	2 cut(s)	696, 754
TasI	AATT	7 cut(s)	86, 177, 261, 377, 436, 457, 603
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	5 cut(s)	91, 229, 354, 719, 802
Tru1I	TTAA	5 cut(s)	5, 176, 516, 608, 797
Tru9I	TTAA	5 cut(s)	5, 176, 516, 608, 797
TscAI	CASTG	2 cut(s)	54, 196
TseI	GCWGC	4 cut(s)	134, 520, 670, 764
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	54, 196
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	2 cut(s)	377, 457
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	753
XmaJI	CCTAGG	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	222, 318, 525, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.