Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008538

Physical Location & Seq

Genomic Coordinates Reverse (-)

24691423 .. 24693055

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCAAGCAGTGGCTATAGAGCTCATGTTTTAGCAATTCCTTATCCAGCTCAAGGCCACATAAACCCGCTACTCCAATTCTCCAAATGCCTAGCCTCTTCTAAGGGCCTCAAAGTGACCCTAGCCAATACCATCTTCATCGCCAACTCTTTGAACCTACCCAAATCGGCAGGCTCCGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCGCGAGCTGAAAGCATCGCCGCCTATCTATCCCGTTTAGAAGCCGAGGGCTCCAAATCCTTAACTGAGATCATTACAAGGCACAAGTCAACACCAAACCCTATTGACTGCATAATTTATAACGCCTTCTTGCCTTGGGCTTTGGATGTAGCTAAACAATTTGGTCTAGCCACTGCTGCCTTCTTTACTCAAGCCTGCACCGTTAATTACACTTACTATCTTGAGCATCGTCATGGACTAATTAGGAGTCCAGCTTCTTCTCCTAATAAACTTCCTCTCGGATTGCATATTCTTGAGGATCAAGATATGCCGTCCTACTTTTCAGTGCCGGGCTCGTATCCAGCTTACTTTGAGATGGTGTTGAACCAATTCTCTAATACCGATAAAGCTGATTTCATTTTCGCCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCGATGTCTCAAATTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACGACAAGGAGTATGGGATTCATCTCTTCGAGATAGATCGAGACTCGGTTTGCACCGACTGGCTCAACACCAAGCCAGCAGGCTCCGTCGTGTACGTAGCCTTTGGTAGTATAGCCAATCTGAGTGACAAGCAAATGCAGGAACTTGCCTTAGGGTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGACTCCGAAGAGGCAAAGCTTCCGGAAAAGTTCAAAGAAGAGACGGCCGAAAAAGGCTTGTTAGTAAATTGGAGCCCTCAGCTCGAAGTGTTGTCACACGAAGCAGTAGGGTGTTTTTTGACTCACGGTGGGTGGAATTCGACAATTGAGGCATTGAGCTTGGGAGTGCCGATGGTTGTAATGCCACAGTGGGCCGACCAGCCTAGTAATTCCAAATTGGTTGAGGGTCTTTGGAAGGTGGGAGTTAGAGTAAAGGTTGATGAGAATAGTGGGGTGGAAGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGATGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGCGAGGGTGGCACCTCGGATAAGAATATTGATGAATTTGTATCCAAGTTGGCAATTGCTAAGCCAGCCAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000381 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0080090 GO:0090304 GO:1901360 GO:1902494 GO:1903311 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

464

Amino Acids

51.24

Weight (kDa)

5.16

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 44	1.3e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	270 - 399	1.1e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73720
fragaria_vesca	FvH4_5g32860
malus_domestica	MD08G1215900.v1.1 MD15G1400300.v1.1
prunus_persica	Prupe.1G547900_v2.0.a1
pyrus_communis	pycom08g18700 pycom15g35890
rosa_chinensis	RchiOBHm_Chr6g0269341 RchiOBHm_Chr7g0230731
rosa_laevigata	RLG00000001479
rosa_multiflora	Rmu_sc0007883.1_g000005
rosa_roxburghii	Rroxscaffold_3G00229780
rosa_rugosa	Rorug07G0262400
rosa_samantha	Rh3AG002100 Rh3BG001600 Rh3CG001900 Rh3DG002000 Rh7AG414100 Rh7BG391300 Rh7CG433000 Rh7DG409700
rosa_wichuraiana	Rw7G034230 Rw7G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	1328
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	955
AciI	CCGC	3 cut(s)	68, 216, 243
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	3 cut(s)	675, 1069, 1352
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	154, 586, 898, 967, 1268
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	5 cut(s)	182, 675, 732, 774, 968
AlwI	GGATC	1 cut(s)	528
Aor13HI	TCCGGA	1 cut(s)	955
AoxI	GGCC	5 cut(s)	55, 106, 698, 978, 1125
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	3 cut(s)	675, 1069, 1352
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	106, 698, 1125
AsuC2I	CCSGG	1 cut(s)	552
AxyI	CCTNAGG	1 cut(s)	889
BanI	GGYRCC	1 cut(s)	1328
BanII	GRGCYC	4 cut(s)	25, 275, 557, 1010
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	7 cut(s)	140, 194, 571, 718, 1099, 1243, 1252
BceAI	ACGGC	3 cut(s)	229, 517, 993
BciVI	GTATCC	2 cut(s)	570, 1369
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	5 cut(s)	182, 675, 732, 774, 968
BfaI	CTAG	4 cut(s)	92, 122, 389, 1137
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	570, 1369
BisI	GCNGC	3 cut(s)	217, 243, 399
BlpI	GCTNAGC	1 cut(s)	1377
BlsI	GCNGC	3 cut(s)	218, 244, 400
Bme1390I	CCNGG	1 cut(s)	552
BmgT120I	GGNCC	3 cut(s)	106, 698, 1125
BmiI	GGNNCC	5 cut(s)	175, 274, 823, 1007, 1330
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	246, 457, 741
Bpu10I	CCTNAGC	1 cut(s)	1011
Bpu1102I	GCTNAGC	1 cut(s)	1377
BpuEI	CTTGAG	5 cut(s)	36, 206, 396, 464, 536
BpuMI	CCSGG	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	835
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	267, 356, 1332
BsaWI	WCCGGW	1 cut(s)	955
BsaXI	ACNNNNNCTCC	2 cut(s)	1167, 1197
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	803
Bse21I	CCTNAGG	1 cut(s)	889
BseAI	TCCGGA	1 cut(s)	955
BseDI	CCNNGG	3 cut(s)	267, 356, 1332
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	279, 851, 1025
BseNI	ACTGG	1 cut(s)	803
BseX3I	CGGCCG	1 cut(s)	978
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	981
BshFI	GGCC	5 cut(s)	57, 108, 700, 980, 1127
BshNI	GGYRCC	1 cut(s)	1328
BsiEI	CGRYCG	1 cut(s)	981
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	551, 956
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	5 cut(s)	182, 675, 732, 774, 968
BsmBI	CGTCTC	2 cut(s)	732, 968
BsmFI	GGGAC	1 cut(s)	947
BsmI	GAATGC	1 cut(s)	1285
BsnI	GGCC	5 cut(s)	57, 108, 700, 980, 1127
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	4 cut(s)	25, 275, 557, 1010
Bsp13I	TCCGGA	1 cut(s)	955
Bsp143I	GATC	3 cut(s)	291, 520, 775
Bsp1720I	GCTNAGC	1 cut(s)	1377
BspACI	CCGC	3 cut(s)	68, 216, 243
BspANI	GGCC	5 cut(s)	57, 108, 700, 980, 1127
BspCNI	CTCAG	3 cut(s)	280, 852, 1024
BspEI	TCCGGA	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	5 cut(s)	175, 274, 823, 1007, 1330
BspPI	GGATC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	1328
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	3 cut(s)	267, 356, 1332
BssMI	GATC	3 cut(s)	291, 520, 775
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	424, 1061, 1122
Bst6I	CTCTTC	7 cut(s)	103, 645, 770, 936, 966, 1210, 1215
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	9 cut(s)	7, 172, 228, 418, 816, 820, 1302, 1383, 1387
BstDEI	CTNAG	6 cut(s)	102, 288, 860, 889, 1011, 1377
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	294, 523, 778
BstMAI	GTCTC	5 cut(s)	182, 675, 732, 774, 968
BstMBI	GATC	3 cut(s)	291, 520, 775
BstMCI	CGRYCG	1 cut(s)	981
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 1310, 1326, 1382
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	16
BstSNI	TACGTA	1 cut(s)	835
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	889
BsuI	GTATCC	2 cut(s)	570, 1369
BsuRI	GGCC	5 cut(s)	57, 108, 700, 980, 1127
BtgZI	GCGATG	2 cut(s)	124, 223
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	3 cut(s)	16, 393, 1320
BtsIMutI	CAGTG	5 cut(s)	16, 393, 552, 1127, 1320
Cac8I	GCNNGC	9 cut(s)	7, 172, 228, 418, 816, 820, 1302, 1383, 1387
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	106, 698, 1125
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	2 cut(s)	26, 455
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	6 cut(s)	102, 288, 860, 889, 1011, 1377
DpnI	GATC	3 cut(s)	293, 522, 777
DpnII	GATC	3 cut(s)	291, 520, 775
EaeI	YGGCCR	1 cut(s)	978
EagI	CGGCCG	1 cut(s)	978
Eam1104I	CTCTTC	7 cut(s)	103, 645, 770, 936, 966, 1210, 1215
EarI	CTCTTC	7 cut(s)	103, 645, 770, 936, 966, 1210, 1215
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	978
Eco105I	TACGTA	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	4 cut(s)	25, 275, 557, 1010
Eco31I	GGTCTC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	978
Eco53kI	GAGCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	889
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	1069
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	4 cut(s)	25, 275, 557, 1010
ErhI	CCWWGG	1 cut(s)	356
Esp3I	CGTCTC	2 cut(s)	732, 968
FaeI	CATG	2 cut(s)	29, 458
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	2 cut(s)	25, 454
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	217, 243, 399
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	4 cut(s)	25, 275, 557, 1010
Fsp4HI	GCNGC	3 cut(s)	217, 243, 399
FspBI	CTAG	4 cut(s)	92, 122, 389, 1137
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	217, 243, 399
HaeIII	GGCC	5 cut(s)	57, 108, 700, 980, 1127
HapII	CCGG	2 cut(s)	551, 956
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	29, 458
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	312, 690
HindII	GTYRAC	2 cut(s)	312, 690
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	6 cut(s)	469, 662, 757, 782, 935, 1054
HpaII	CCGG	2 cut(s)	551, 956
Hpy166II	GTNNAC	3 cut(s)	312, 690, 832
Hpy188I	TCNGA	6 cut(s)	199, 503, 737, 861, 940, 1336
Hpy188III	TCNNGA	6 cut(s)	443, 515, 524, 769, 779, 956
Hpy8I	GTNNAC	3 cut(s)	312, 690, 832
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	5 cut(s)	358, 412, 892, 1162, 1205
HpyCH4III	ACNGT	3 cut(s)	424, 1061, 1122
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	6 cut(s)	333, 420, 508, 792, 877, 1236
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 1310, 1326, 1382
HpyF3I	CTNAG	6 cut(s)	102, 288, 860, 889, 1011, 1377
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	2 cut(s)	29, 458
HspAI	GCGC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	955
Kzo9I	GATC	3 cut(s)	291, 520, 775
LmnI	GCTCC	5 cut(s)	179, 278, 827, 1005, 1297
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	246, 457, 741
MaeI	CTAG	4 cut(s)	92, 122, 389, 1137
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	3 cut(s)	115, 863, 1026
MalI	GATC	3 cut(s)	293, 522, 777
MboI	GATC	3 cut(s)	291, 520, 775
MboII	GAAGA	9 cut(s)	90, 127, 471, 662, 757, 953, 983, 1227, 1232
MfeI	CAATTG	2 cut(s)	1077, 1371
MhlI	GDGCHC	4 cut(s)	25, 275, 557, 1010
MlyI	GAGTC	4 cut(s)	478, 776, 929, 1048
MmeI	TCCRAC	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	284, 426
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	551, 956
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	2 cut(s)	1077, 1371
Mva1269I	GAATGC	1 cut(s)	1285
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	398, 1310, 1326, 1382
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	3 cut(s)	291, 520, 775
NlaIII	CATG	2 cut(s)	29, 458
NlaIV	GGNNCC	5 cut(s)	175, 274, 823, 1007, 1330
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	115, 863, 1026
PctI	GAATGC	1 cut(s)	1285
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	662, 757
PkrI	GCNGC	3 cut(s)	218, 244, 400
PleI	GAGTC	4 cut(s)	477, 776, 929, 1048
PpsI	GAGTC	4 cut(s)	477, 776, 929, 1048
Ppu21I	YACGTR	1 cut(s)	835
PsiI	TTATAA	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	175, 274, 823, 1007, 1330
PspPI	GGNCC	3 cut(s)	106, 698, 1125
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	284, 426
SatI	GCNGC	3 cut(s)	217, 243, 399
Sau3AI	GATC	3 cut(s)	291, 520, 775
Sau96I	GGNCC	3 cut(s)	106, 698, 1125
SchI	GAGTC	4 cut(s)	478, 776, 929, 1048
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	4 cut(s)	25, 275, 557, 1010
SfaNI	GCATC	3 cut(s)	246, 457, 741
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	5 cut(s)	51, 185, 411, 443, 515
SmoI	CTYRAG	5 cut(s)	51, 185, 411, 443, 515
SnaBI	TACGTA	1 cut(s)	835
SsiI	CCGC	3 cut(s)	68, 216, 243
SspI	AATATT	1 cut(s)	1345
SspMI	CTAG	4 cut(s)	92, 122, 389, 1137
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	424, 1061, 1122
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	5 cut(s)	665, 768, 778, 1017, 1073
TauI	GCSGC	2 cut(s)	219, 245
TfiI	GAWTC	2 cut(s)	662, 757
Tru1I	TTAA	2 cut(s)	284, 426
Tru9I	TTAA	2 cut(s)	284, 426
TscAI	CASTG	5 cut(s)	16, 400, 552, 1127, 1320
TseFI	GTSAC	3 cut(s)	115, 863, 1026
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	3 cut(s)	115, 863, 1026
TspDTI	ATGAA	6 cut(s)	127, 607, 749, 1286, 1292, 1365
TspGWI	ACGGA	2 cut(s)	166, 814
TspRI	CASTG	5 cut(s)	16, 400, 552, 1127, 1320
XapI	RAATTY	3 cut(s)	675, 1069, 1352
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	4 cut(s)	92, 122, 389, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.