Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006792

Physical Location & Seq

Genomic Coordinates Forward (+)

46438261 .. 46446666

Gene Structure 8406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G569600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGCTCATCCCTCCATCTGTCTCACCCTCAGTCCCTCACAAGCTTGCAAAAATGGAGGTGTCGTCGGTACATGGCGTCGGTGTCCAACATGTCCTCTGCGGCCCTTCACCCATTTCTTCTCTCTCTATTCTCTCTGCGACTCCATGGAGGAGCACTAGAGCTAAGAACTCTCATCTCTGTTGTGCCACAACTCTTGTCAAAGAACGCCACACTGAGCCTCCCAACAATGGCAGCGGAATCCCAAAGCGGCACTCCAAGCAATACTTGGCTAGACAGTCTGCTATTCTTGAGGTCCAAGAGTCCTCTGACTTGGACTCGGCTCTTACAAGATTAGGTGGGAGTTTGAAGGTCCAAGACTTGAATGCCATAATACGCCATTTTGGGATACTGAAAAGATGGCACGATCTTTCTCAGCTCTTTGAATGGATGCAACAGAATGGAAAAATTAGTGCATCATCCTATAGCAGCTATATAAAATTCATGGGAAAGAGCCTCAATCCTGTAAAGGCACTAGAAATATACAATAATATTCAAGATGCATCAACCAAAAAGAATGTTCACATATGCAATTCTGTTCTTGGTAGTCTGATCAGGAGTGGCAAATTTGATGGAAGCTTTAAGTTATTTCACCAGATGAAGCAGGATGGTTTAACACCAGATGCTGTCACATACAGTACGCTCCTTGCAGGCTGCAACAAAGTCAAACATGGTTATTCTAAGGCATTAGAACTTGTTCAAGAATTGCAGCGCAATGAGCTGCAGATGGACAGTGTAATTTATGGTACACTTTTAGCTGTATGTGCTTCTAATAATAAATTAGAGGAAGCAGAAGGTTATTTTAAGCAGATGAAGAATGAAGGCTATTTACCAAATGTCTTTCATTATAGCGCTATGCTTAATGCTTACTCTATAAGTGGGAACTACAAAGAGGCTGATGATTTGGTTCAGGATATGAAATCTGCAGGGTTAGTACCTAATAAGGTTATTTTGACAACTTTATTGAAGGTTTATGTCAGAGGTGGGCTGTTTGAAAAATCAAGAGAACTATTAGCTGAACTGGAAGCTTTGGGTTATGCTGAAGATGAGATGCCATACTGCTTATTGATGGATGCCCTTGCTAAGGCTGGGCGCATACATGAAGCTAAATTGGTTTTTGATGAAATGAAGGAGAAGTCCATCCGATCAAATGGCTATTCATACAGCATCATGATTTCAGCTTTCTGCCGAGGTGGGCTTCTGGAAGATGCAAAGCAGTTGTCTAAGGATGTTGAAAGAACTCATGACAAATTTGACTTGGTTATGTTGAATACAATGATCTGTGCCTATTGTAGAGCAGGTGAAATGGATAGTGTAATGGAAATGATGAGAAAAATGGATGAACAAAAAATCACTCCTGATTATAATACCTTTCATATCCTAATAAAATACTTCTGTAAGGAGAAGTTATACCTGCTTGCTTATCAGACTATGGAGGACATGCACAACAAGGGACACCAACCAGATGAGGAACTTTGTTCCTCCTTAATGTTTCTTCTTGGTAAGATAAGAGCATATTCAGAAGCATATTCTGTTTACAATATTCTGAGATATAGCAAGAGGACAATGTGCAAGGCCCTTCATGAGAAGATTCTGCACATTCTACTGGCAGGACAGCTTCTCAAAGATGCTTATGTAGTAGTCAAGGACAATGCAGGGTTGATTTCTAAGCCTGCTGTTAAAAAGTTTTCAACTGCCTTTCTGAAGTTGGGAAACATCAACTTGATAAATGATGTGTTGAAGGTAATTGATGCTTCTGGCTGCAAGATTGATCAGGGACTATTTCAGATGGCCATATCGCGCTATATCGCACTCCCTGAGAAAAAGGAATTGCTTATTCAAATGCTACTGTGGATGCCAGGACAAGGTTATGTTGTTGATTCAGCTACAAGAAACCTAATACTGAAAAACTCTCACTTATTTGGTCGCCAACACATTGCGGATGTACTGTCGAAGCAACATATGATTTCAAAAGCTTCAAAATCTCGTAAGAAGGATAACTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

682

Amino Acids

76.53

Weight (kDa)

9.03

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10910 AT1G10910
fragaria_vesca	FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340 FvH4_5g29340
malus_domestica	MD15G1423900.v1.1
prunus_persica	Prupe.1G569600_v2.0.a1
pyrus_communis	pycom15g37570
rosa_chinensis	RchiOBHm_Chr7g0222211
rosa_laevigata	RLG00000002083
rosa_multiflora	Rmu_ssc0000240.1_g000019
rosa_roxburghii	Rroxscaffold_3G00237300
rosa_rugosa	Rorug07G0206800
rosa_samantha	Rh7AG347400 Rh7BG338100 Rh7CG365000 Rh7DG345600
rosa_wichuraiana	Rw7G029440 Rw7G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1401
AarI	CACCTGC	1 cut(s)	1325
Acc36I	ACCTGC	2 cut(s)	1325, 1458
AccII	CGCG	1 cut(s)	1837
AciI	CCGC	4 cut(s)	99, 234, 247, 1976
AcoI	YGGCCR	1 cut(s)	1827
AcsI	RAATTY	3 cut(s)	476, 602, 1286
AcuI	CTGAAG	2 cut(s)	1098, 1760
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	5 cut(s)	69, 676, 784, 972, 1983
AfeI	AGCGCT	1 cut(s)	889
AfiI	CCNNNNNNNGG	3 cut(s)	227, 1120, 1901
AflIII	ACRYGT	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	1894
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	662
Aor51HI	AGCGCT	1 cut(s)	889
AoxI	GGCC	3 cut(s)	100, 1611, 1827
ApeKI	GCWGC	6 cut(s)	231, 465, 690, 745, 757, 1797
ApoI	RAATTY	3 cut(s)	476, 602, 1286
ArsI	GACNNNNNNTTYG	2 cut(s)	1241, 1273
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	4 cut(s)	750, 890, 1131, 1839
AspS9I	GGNCC	4 cut(s)	101, 292, 349, 1612
AsuHPI	GGTGA	4 cut(s)	15, 99, 620, 1349
AvaII	GGWCC	2 cut(s)	292, 349
BalI	TGGCCA	1 cut(s)	1829
BarI	GAAGNNNNNNTAC	2 cut(s)	849, 881
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	6 cut(s)	243, 477, 677, 744, 757, 1784
BccI	CCATC	8 cut(s)	22, 390, 602, 638, 757, 1099, 1184, 1819
BciT130I	CCWGG	1 cut(s)	1896
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	2 cut(s)	588, 1807
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	156, 270, 512
BfmI	CTRYAG	3 cut(s)	460, 758, 960
BfoI	RGCGCY	1 cut(s)	891
BfuAI	ACCTGC	2 cut(s)	1325, 1458
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	8 cut(s)	100, 232, 248, 466, 691, 746, 758, 1798
BlsI	GCNGC	8 cut(s)	101, 233, 249, 467, 692, 747, 759, 1799
Bme1390I	CCNGG	1 cut(s)	1896
Bme18I	GGWCC	2 cut(s)	292, 349
BmgT120I	GGNCC	4 cut(s)	101, 292, 349, 1612
BmrFI	CCNGG	1 cut(s)	1896
Bpu10I	CCTNAGC	1 cut(s)	1119
BpuEI	CTTGAG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	143, 1225
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 1120, 1901
Bse1I	ACTGG	2 cut(s)	1062, 1647
Bse3DI	GCAATG	2 cut(s)	757, 1971
BseBI	CCWGG	1 cut(s)	1896
BseDI	CCNNGG	2 cut(s)	143, 1225
BseLI	CCNNNNNNNGG	3 cut(s)	227, 1120, 1901
BseMI	GCAATG	2 cut(s)	757, 1971
BseMII	CTCAG	5 cut(s)	42, 204, 425, 1574, 1845
BseNI	ACTGG	2 cut(s)	1062, 1647
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	6 cut(s)	243, 477, 677, 744, 757, 1784
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	1 cut(s)	1616
Bsh1236I	CGCG	1 cut(s)	1837
BshFI	GGCC	3 cut(s)	102, 1613, 1829
BsiHKAI	GWGCWC	1 cut(s)	155
BslFI	GGGAC	3 cut(s)	17, 1503, 1827
BslI	CCNNNNNNNGG	3 cut(s)	227, 1120, 1901
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	3 cut(s)	17, 1503, 1827
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	102, 1613, 1829
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	4 cut(s)	99, 234, 247, 1976
BspANI	GGCC	3 cut(s)	102, 1613, 1829
BspCNI	CTCAG	5 cut(s)	41, 205, 424, 1575, 1846
BspFNI	CGCG	1 cut(s)	1837
BspHI	TCATGA	3 cut(s)	1206, 1279, 1618
BspMAI	CTGCAG	2 cut(s)	762, 964
BspMI	ACCTGC	2 cut(s)	1325, 1458
BsrDI	GCAATG	2 cut(s)	757, 1971
BsrI	ACTGG	2 cut(s)	1062, 1647
BssECI	CCNNGG	2 cut(s)	143, 1225
BssMI	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	1896
Bst4CI	ACNGT	5 cut(s)	276, 674, 770, 1887, 1986
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	4 cut(s)	45, 688, 1455, 1710
BstDSI	CCRYGG	1 cut(s)	143
BstENI	CCTNNNNNAGG	1 cut(s)	1118
BstFNI	CGCG	1 cut(s)	1837
BstH2I	RGCGCY	1 cut(s)	891
BstHHI	GCGC	4 cut(s)	750, 890, 1131, 1839
BstKTI	GATC	5 cut(s)	406, 591, 1184, 1317, 1810
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 754, 800
BstNI	CCWGG	1 cut(s)	1896
BstNSI	RCATGY	2 cut(s)	92, 1480
BstSCI	CCNGG	1 cut(s)	1894
BstSFI	CTRYAG	3 cut(s)	460, 758, 960
BstUI	CGCG	1 cut(s)	1837
BstV1I	GCAGC	6 cut(s)	243, 477, 677, 744, 757, 1784
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	102, 1613, 1829
BtgI	CCRYGG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	210, 775
BveI	ACCTGC	2 cut(s)	1325, 1458
Cac8I	GCNNGC	4 cut(s)	45, 688, 1455, 1710
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	3 cut(s)	1206, 1279, 1618
CfoI	GCGC	4 cut(s)	750, 890, 1131, 1839
Cfr13I	GGNCC	4 cut(s)	101, 292, 349, 1612
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	5 cut(s)	68, 675, 783, 971, 1982
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviQI	GTAC	5 cut(s)	68, 675, 783, 971, 1982
DpnI	GATC	5 cut(s)	405, 590, 1183, 1316, 1809
DpnII	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
EaeI	YGGCCR	1 cut(s)	1827
Eco130I	CCWWGG	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	292, 349
Eco47III	AGCGCT	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	1098, 1760
EcoNI	CCTNNNNNAGG	1 cut(s)	1118
EcoO109I	RGGNCCY	1 cut(s)	1612
EcoRII	CCWGG	1 cut(s)	1894
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	143
FalI	AAGNNNNNCTT	3 cut(s)	248, 280, 2021
FaqI	GGGAC	3 cut(s)	17, 1503, 1827
FauNDI	CATATG	2 cut(s)	563, 1998
FbaI	TGATCA	2 cut(s)	588, 1807
Fnu4HI	GCNGC	8 cut(s)	100, 232, 248, 466, 691, 746, 758, 1798
FokI	GGATG	9 cut(s)	439, 442, 656, 1121, 1163, 1277, 1388, 1903, 1991
Fsp4HI	GCNGC	8 cut(s)	100, 232, 248, 466, 691, 746, 758, 1798
FspBI	CTAG	3 cut(s)	156, 270, 512
GlaI	GCGC	4 cut(s)	749, 889, 1130, 1838
GluI	GCNGC	8 cut(s)	100, 232, 248, 466, 691, 746, 758, 1798
GsaI	CCCAGC	1 cut(s)	1128
HaeII	RGCGCY	1 cut(s)	891
HaeIII	GGCC	3 cut(s)	102, 1613, 1829
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	4 cut(s)	750, 890, 1131, 1839
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	4 cut(s)	748, 888, 1129, 1837
HinP1I	GCGC	4 cut(s)	748, 888, 1129, 1837
HindIII	AAGCTT	4 cut(s)	41, 613, 1062, 2010
HinfI	GANTC	6 cut(s)	139, 237, 299, 314, 1627, 1916
HphI	GGTGA	4 cut(s)	15, 99, 620, 1349
Hpy166II	GTNNAC	3 cut(s)	559, 785, 1573
Hpy188I	TCNGA	9 cut(s)	307, 588, 1016, 1181, 1464, 1558, 1584, 1740, 1824
Hpy8I	GTNNAC	3 cut(s)	559, 785, 1573
Hpy99I	CGWCG	2 cut(s)	67, 80
HpyAV	CCTTC	9 cut(s)	114, 340, 824, 851, 997, 1159, 1625, 1771, 2023
HpyCH4III	ACNGT	5 cut(s)	276, 674, 770, 1887, 1986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 754, 800
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	4 cut(s)	748, 888, 1129, 1837
Ksp22I	TGATCA	2 cut(s)	588, 1807
Kzo9I	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
LmnI	GCTCC	2 cut(s)	150, 684
Lsp1109I	GCAGC	6 cut(s)	243, 477, 677, 744, 757, 1784
MaeI	CTAG	3 cut(s)	156, 270, 512
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	5 cut(s)	405, 590, 1183, 1316, 1809
MboI	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
MboII	GAAGA	6 cut(s)	108, 862, 1091, 1253, 1523, 1636
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	1829
MluNI	TGGCCA	1 cut(s)	1829
MlyI	GAGTC	3 cut(s)	133, 308, 308
MmeI	TCCRAC	1 cut(s)	109
Mox20I	TGGCCA	1 cut(s)	1829
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	1829
MseI	TTAA	6 cut(s)	618, 650, 840, 897, 1523, 1716
Msp20I	TGGCCA	1 cut(s)	1829
MspA1I	CMGCKG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	1896
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	1896
MvnI	CGCG	1 cut(s)	1837
MwoI	GCNNNNNNNGC	3 cut(s)	256, 754, 800
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	2 cut(s)	563, 1998
NdeII	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
NmeAIII	GCCGAG	2 cut(s)	296, 1250
NmuCI	GTSAC	1 cut(s)	664
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	92, 1480
PagI	TCATGA	3 cut(s)	1206, 1279, 1618
PaqCI	CACCTGC	1 cut(s)	1325
PciI	ACATGT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	237, 1627, 1916
PkrI	GCNGC	8 cut(s)	101, 233, 249, 467, 692, 747, 759, 1799
PleI	GAGTC	3 cut(s)	133, 307, 308
PpsI	GAGTC	3 cut(s)	133, 307, 308
PscI	ACATGT	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	1401
Psp6I	CCWGG	1 cut(s)	1894
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	1 cut(s)	1894
PspPI	GGNCC	4 cut(s)	101, 292, 349, 1612
PstI	CTGCAG	2 cut(s)	762, 964
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	5 cut(s)	69, 676, 784, 972, 1983
RsaNI	GTAC	5 cut(s)	68, 675, 783, 971, 1982
SaqAI	TTAA	6 cut(s)	618, 650, 840, 897, 1523, 1716
SatI	GCNGC	8 cut(s)	100, 232, 248, 466, 691, 746, 758, 1798
Sau3AI	GATC	5 cut(s)	403, 588, 1181, 1314, 1807
Sau96I	GGNCC	4 cut(s)	101, 292, 349, 1612
SchI	GAGTC	3 cut(s)	133, 308, 308
ScrFI	CCNGG	1 cut(s)	1896
SduI	GDGCHC	1 cut(s)	155
SfcI	CTRYAG	3 cut(s)	460, 758, 960
SinI	GGWCC	2 cut(s)	292, 349
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	4 cut(s)	99, 234, 247, 1976
SspI	AATATT	2 cut(s)	529, 1579
SspMI	CTAG	3 cut(s)	156, 270, 512
StyD4I	CCNGG	1 cut(s)	1894
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	5 cut(s)	276, 674, 770, 1887, 1986
TaqI	TCGA	1 cut(s)	1988
TatI	WGTACW	1 cut(s)	1981
TauI	GCSGC	2 cut(s)	102, 250
TfiI	GAWTC	3 cut(s)	237, 1627, 1916
Tru1I	TTAA	6 cut(s)	618, 650, 840, 897, 1523, 1716
Tru9I	TTAA	6 cut(s)	618, 650, 840, 897, 1523, 1716
TscAI	CASTG	2 cut(s)	217, 775
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	6 cut(s)	231, 465, 690, 745, 757, 1797
Tsp45I	GTSAC	1 cut(s)	664
TspRI	CASTG	2 cut(s)	217, 775
VpaK11BI	GGWCC	2 cut(s)	292, 349
XagI	CCTNNNNNAGG	1 cut(s)	1118
XapI	RAATTY	3 cut(s)	476, 602, 1286
XceI	RCATGY	2 cut(s)	92, 1480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	3 cut(s)	156, 270, 512
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.