Rh7BG338100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006792
Physical Location & Seq
Reverse (-)
35325506 .. 35336530
11025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG338100.1

Sequence Viewer

Length: 1776 bp
ATGGAGGTGTCGGCACTCGGTGTTGGTGTCCAACATGTCCTCTGCTGCAACTCCGTTCCATTTATTCCCTCACTGACACCTTGGAGCACAAGACTGAATACTTCTCATGTTTGTTGTGCTGCCACAACTCTTGACAAAGAGCCCCTCCGCCGGCAGCCTCCCAACTCTGACACTAGGAGGGTCACAAGGCCTCACTCCAAGCAATATTTGGCTAGACAATCGGCAATTCTTCAAGTCCAACAGTCCTCTGACTTGGAATCTGCTCTTACAAGATTAGGTGGAAGTTTGAAGGTTCAAGACTTGAATGCCATAATACGCCATTTTGGGATGCTGAAAAGATGGCATGATCTTTCCCAGCTCTTTGAATGGATGCAACAGAATGGAAAAATTAGTGCGTCGTCATATAGCAGCTATATAAAATTCATGGGGAAGAGCCTCAATCCCGTAAAAGCACTAGAAATTTACAATAGCATTCAAGATGAATCAACCAAAAAGAACGTTCACATATGCAATTCGGTTCTTGGTAGTCTGGTCAGGAGTGGCAAGTTTGATGGCAGTATTAAGTTATTTCACCAGATGAAGCAGGATGGCTTAACACCAGATGCTGTTACCTATAGTACGCTGCTTGCAGGTTGCATCAAATTCAAACACGGTTATTCGAAGGCATTAGAGCTAGTTCAAGAATTACAGAATAATGAGCTGCAGATGGACAGGGTAATATATGGTACACTTTTGGCTATCTGTGCTTCAAATAATAAATGGGAGGAAGCAGAAAGTTATTTTAAGCAGATGAAGGATGAAGGTCATATACCAAATGAATTCCATTACAGCTCTTTGCTCAATGCTTACTCTATCAGCGGGAGCTACAAAAAGGCTGATGATTTGGTGCAAGATATGAAATCTGCAGGGTTGGTACCTAATAAGGTTATTTTGACAACTTTATTGAAGGCTTATGTCAGAGGTGGGTTGTTTGAAAAATCAAGAGACTTATTAGCCGAACTGGAAGCTTTGGGATATGCTGAAGATGAGATGCCATACTGTCTATTGATGGATGCCCTTGCTAAGGCTGGGCGTATACAAGATGCTAAATTGGTTTTTGATGAAATGAAGGAGAAATCCGTACGATCAGATGGATATTCCTACAGTATCATGATTTCTGCTTTCTGCCGAGGTGGGCTTGTAGATGATGCAAAGCAGTTGGCTAAGGATTTTGAAAGAACTTATGACAAATATGATTTGGTTATATTGAATACAATGATCTGTGCCTATTGCAGAGCAGGTGAAATGGATAGTGTAATGGAAATGCTGAGAAAAATGGATGAATTAAAAATCATACCTGATAATAATACCTTCCATATTCTAATAAAGTACTTCTGTAAGGAGAAGTTATACATGCTTGCTTATAAGACCATGGAGGACATGCACAACAAAGGCTACCCACCAGATGAGGAACTTTGTTCCTCCTTAATGTTTCATCTTGGTAAGATAAGAGCATATTCAGAAGCATACTCTATTTACAATATGCTAAGGTATAGTAAGCGAACCATGTGCAAGGCCCTTCATGAGAAGATTCTACACATTCTAGTAGCAGGAAGGCTTCTCAAAGATGCTTATGTAGTAGTCAAGGATAATCCGGGGTTGATTTCTAAGCCTGCTACAATGAAATTTGCAACTGCATTTATGAAATTGGGAAATATCAACTTGATAAATGATGTTTTGAAGGCAATTGATGGTTCTGGTTTCAAGATTGATCAGGTAAACTATTACGGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

591

Amino Acids

66.87

Weight (kDa)

8.58

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 148 - 264 7.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 165 - 214 6.5e-13 PPR repeat family
PPR_long PF17177 219 - 359 1.4e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 225 - 283 2.5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 237 - 283 1.3e-08 PPR repeat family
PPR PF01535 239 - 268 8.2e-06 PPR repeat
PPR_2 PF13041 271 - 319 4.5e-07 PPR repeat family
TPR_24 PF23276 322 - 437 7.6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 348 - 390 2.8e-11 PPR repeat family
PPR_1 PF12854 377 - 400 7e-06 PPR repeat
PPR_1 PF12854 411 - 439 6.6e-06 PPR repeat
PPR_2 PF13041 412 - 460 2.2e-11 PPR repeat family
PPR PF01535 414 - 442 5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
AarI CACCTGC 1 cut(s) 1268
Acc36I ACCTGC 2 cut(s) 620, 1268
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 913
AccI GTMKAC 1 cut(s) 1075
AciI CCGC 2 cut(s) 148, 858
AclI AACGTT 1 cut(s) 498
AcsI RAATTY 5 cut(s) 419, 459, 641, 818, 1664
AcuI CTGAAG 1 cut(s) 1041
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 5 cut(s) 619, 727, 915, 1122, 1370
AfiI CCNNNNNNNGG 2 cut(s) 150, 1063
AflIII ACRYGT 1 cut(s) 34
AluBI AGCT 7 cut(s) 358, 411, 673, 700, 831, 864, 1007
AluI AGCT 7 cut(s) 358, 411, 673, 700, 831, 864, 1007
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 978
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 2 cut(s) 188, 1554
ApeKI GCWGC 6 cut(s) 45, 119, 154, 408, 622, 700
ApoI RAATTY 5 cut(s) 419, 459, 641, 818, 1664
Asp718I GGTACC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 1555
AsuC2I CCSGG 1 cut(s) 1635
AsuHPI GGTGA 2 cut(s) 563, 1292
AsuII TTCGAA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 913
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 6 cut(s) 32, 106, 166, 420, 609, 687
BccI CCATC 7 cut(s) 333, 545, 581, 700, 1042, 1124, 1724
BcgI CGANNNNNNTGC 2 cut(s) 1530, 1564
BclI TGATCA 1 cut(s) 1750
BcnI CCSGG 1 cut(s) 1635
BcoDI GTCTC 1 cut(s) 978
BfaI CTAG 5 cut(s) 174, 213, 455, 674, 1583
BfmI CTRYAG 4 cut(s) 613, 701, 903, 1141
BfuAI ACCTGC 2 cut(s) 620, 1268
BisI GCNGC 6 cut(s) 46, 120, 155, 409, 623, 701
BlsI GCNGC 6 cut(s) 47, 121, 156, 410, 624, 702
BmcAI AGTACT 1 cut(s) 1370
Bme1390I CCNGG 1 cut(s) 1635
BmgT120I GGNCC 1 cut(s) 1555
BmiI GGNNCC 1 cut(s) 915
BmrFI CCNGG 1 cut(s) 1635
BmsI GCATC 9 cut(s) 318, 360, 592, 645, 1020, 1042, 1072, 1177, 1597
Bpu10I CCTNAGC 3 cut(s) 1062, 1203, 1526
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 1635
BsaJI CCNNGG 4 cut(s) 80, 1168, 1410, 1634
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 1063
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 1005
BseDI CCNNGG 4 cut(s) 80, 1168, 1410, 1634
BseGI GGATG 6 cut(s) 333, 375, 592, 802, 1057, 1324
BseLI CCNNNNNNNGG 2 cut(s) 150, 1063
BseMII CTCAG 1 cut(s) 1298
BseNI ACTGG 1 cut(s) 1005
BseXI GCAGC 6 cut(s) 32, 106, 166, 420, 609, 687
BseYI CCCAGC 2 cut(s) 354, 1067
BshFI GGCC 2 cut(s) 190, 1556
BshNI GGYRCC 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 151, 1634
BsiWI CGTACG 1 cut(s) 1120
BslI CCNNNNNNNGG 2 cut(s) 150, 1063
BsmAI GTCTC 1 cut(s) 978
BsmI GAATGC 2 cut(s) 310, 471
BsnI GGCC 2 cut(s) 190, 1556
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 89, 144
Bsp143I GATC 4 cut(s) 346, 1124, 1257, 1750
Bsp19I CCATGG 1 cut(s) 1410
BspACI CCGC 2 cut(s) 148, 858
BspANI GGCC 2 cut(s) 190, 1556
BspCNI CTCAG 1 cut(s) 1299
BspHI TCATGA 2 cut(s) 1149, 1561
BspLI GGNNCC 1 cut(s) 915
BspMAI CTGCAG 2 cut(s) 705, 907
BspMI ACCTGC 2 cut(s) 620, 1268
BspQI GCTCTTC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 1005
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 80, 1168, 1410, 1634
BssMI GATC 4 cut(s) 346, 1124, 1257, 1750
BssNAI GTATAC 1 cut(s) 1076
BssT1I CCWWGG 2 cut(s) 80, 1410
Bst1107I GTATAC 1 cut(s) 1076
Bst4CI ACNGT 4 cut(s) 243, 653, 1040, 1145
Bst6I CTCTTC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 152, 627, 1398, 1653
BstDEI CTNAG 5 cut(s) 1062, 1203, 1307, 1526, 1647
BstDSI CCRYGG 1 cut(s) 1410
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 6 cut(s) 333, 375, 592, 802, 1057, 1324
BstKTI GATC 4 cut(s) 349, 1127, 1260, 1753
BstMAI GTCTC 1 cut(s) 978
BstMBI GATC 4 cut(s) 346, 1124, 1257, 1750
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNSI RCATGY 3 cut(s) 38, 1396, 1423
BstSCI CCNGG 1 cut(s) 1633
BstSFI CTRYAG 4 cut(s) 613, 701, 903, 1141
BstV1I GCAGC 6 cut(s) 32, 106, 166, 420, 609, 687
BstZ17I GTATAC 1 cut(s) 1076
BsuRI GGCC 2 cut(s) 190, 1556
BtgI CCRYGG 1 cut(s) 1410
BtsCI GGATG 6 cut(s) 333, 375, 592, 802, 1057, 1324
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 2 cut(s) 620, 1268
Cac8I GCNNGC 4 cut(s) 152, 627, 1398, 1653
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 2 cut(s) 1149, 1561
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 1555
CseI GACGC 1 cut(s) 384
Csp6I GTAC 5 cut(s) 618, 726, 914, 1121, 1369
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviQI GTAC 5 cut(s) 618, 726, 914, 1121, 1369
DdeI CTNAG 5 cut(s) 1062, 1203, 1307, 1526, 1647
DpnI GATC 4 cut(s) 348, 1126, 1259, 1752
DpnII GATC 4 cut(s) 346, 1124, 1257, 1750
DraIII CACNNNGTG 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 80, 1410
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoO109I RGGNCCY 1 cut(s) 1555
EcoRI GAATTC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 80, 1410
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 80, 1410
FauI CCCGC 1 cut(s) 851
FauNDI CATATG 1 cut(s) 506
FbaI TGATCA 1 cut(s) 1750
FblI GTMKAC 1 cut(s) 1075
Fnu4HI GCNGC 6 cut(s) 46, 120, 155, 409, 623, 701
FokI GGATG 6 cut(s) 340, 382, 599, 809, 1064, 1331
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 46, 120, 155, 409, 623, 701
FspBI CTAG 5 cut(s) 174, 213, 455, 674, 1583
GluI GCNGC 6 cut(s) 46, 120, 155, 409, 623, 701
GsaI CCCAGC 2 cut(s) 358, 1071
HaeIII GGCC 2 cut(s) 190, 1556
HapII CCGG 2 cut(s) 151, 1634
HgaI GACGC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 1005
HinfI GANTC 3 cut(s) 257, 482, 1570
HpaII CCGG 2 cut(s) 151, 1634
HphI GGTGA 2 cut(s) 563, 1292
Hpy166II GTNNAC 4 cut(s) 502, 728, 1076, 1759
Hpy188I TCNGA 5 cut(s) 169, 250, 959, 1129, 1501
Hpy188III TCNNGA 9 cut(s) 131, 296, 476, 535, 680, 981, 1150, 1562, 1744
Hpy8I GTNNAC 4 cut(s) 502, 728, 1076, 1759
Hpy99I CGWCG 1 cut(s) 400
HpyCH4III ACNGT 4 cut(s) 243, 653, 1040, 1145
HpyCH4IV ACGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 5 cut(s) 1062, 1203, 1307, 1526, 1647
HpySE526I ACGT 1 cut(s) 498
KpnI GGTACC 1 cut(s) 917
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 1750
Kzo9I GATC 4 cut(s) 346, 1124, 1257, 1750
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 84, 861
Lsp1109I GCAGC 6 cut(s) 32, 106, 166, 420, 609, 687
LweI GCATC 9 cut(s) 318, 360, 592, 645, 1020, 1042, 1072, 1177, 1597
MaeI CTAG 5 cut(s) 174, 213, 455, 674, 1583
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 181, 607
MalI GATC 4 cut(s) 348, 1126, 1259, 1752
MboI GATC 4 cut(s) 346, 1124, 1257, 1750
MboII GAAGA 4 cut(s) 221, 442, 1034, 1579
MfeI CAATTG 1 cut(s) 1725
MhlI GDGCHC 2 cut(s) 89, 144
MmeI TCCRAC 2 cut(s) 55, 262
MroNI GCCGGC 1 cut(s) 150
MseI TTAA 6 cut(s) 561, 593, 783, 1325, 1466, 1774
MspA1I CMGCKG 1 cut(s) 858
MspI CCGG 2 cut(s) 151, 1634
MspR9I CCNGG 1 cut(s) 1635
MunI CAATTG 1 cut(s) 1725
Mva1269I GAATGC 2 cut(s) 310, 471
MwoI GCNNNNNNNGC 1 cut(s) 743
NaeI GCCGGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 1635
NcoI CCATGG 1 cut(s) 1410
NdeI CATATG 1 cut(s) 506
NdeII GATC 4 cut(s) 346, 1124, 1257, 1750
NgoMIV GCCGGC 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 915
NmeAIII GCCGAG 1 cut(s) 1193
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 3 cut(s) 38, 1396, 1423
NspV TTCGAA 1 cut(s) 659
PagI TCATGA 2 cut(s) 1149, 1561
PaqCI CACCTGC 1 cut(s) 1268
PceI AGGCCT 1 cut(s) 190
PciI ACATGT 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 425
PctI GAATGC 2 cut(s) 310, 471
PdiI GCCGGC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 257, 482, 1570
Pfl23II CGTACG 1 cut(s) 1120
PkrI GCNGC 6 cut(s) 47, 121, 156, 410, 624, 702
PscI ACATGT 1 cut(s) 34
PsiI TTATAA 1 cut(s) 1404
Psp1406I AACGTT 1 cut(s) 498
PspFI CCCAGC 2 cut(s) 354, 1067
PspLI CGTACG 1 cut(s) 1120
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 1 cut(s) 1555
PstI CTGCAG 2 cut(s) 705, 907
PstNI CAGNNNCTG 1 cut(s) 605
RsaI GTAC 5 cut(s) 619, 727, 915, 1122, 1370
RsaNI GTAC 5 cut(s) 618, 726, 914, 1121, 1369
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 6 cut(s) 561, 593, 783, 1325, 1466, 1774
SatI GCNGC 6 cut(s) 46, 120, 155, 409, 623, 701
Sau3AI GATC 4 cut(s) 346, 1124, 1257, 1750
Sau96I GGNCC 1 cut(s) 1555
ScaI AGTACT 1 cut(s) 1370
ScrFI CCNGG 1 cut(s) 1635
SduI GDGCHC 2 cut(s) 89, 144
SfaNI GCATC 9 cut(s) 318, 360, 592, 645, 1020, 1042, 1072, 1177, 1597
SfcI CTRYAG 4 cut(s) 613, 701, 903, 1141
SfuI TTCGAA 1 cut(s) 659
SseBI AGGCCT 1 cut(s) 190
SsiI CCGC 2 cut(s) 148, 858
SspI AATATT 1 cut(s) 206
SspMI CTAG 5 cut(s) 174, 213, 455, 674, 1583
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 1633
StyI CCWWGG 2 cut(s) 80, 1410
TaaI ACNGT 4 cut(s) 243, 653, 1040, 1145
TaiI ACGT 1 cut(s) 501
TaqI TCGA 1 cut(s) 659
TatI WGTACW 1 cut(s) 1368
TfiI GAWTC 3 cut(s) 257, 482, 1570
Tru1I TTAA 6 cut(s) 561, 593, 783, 1325, 1466, 1774
Tru9I TTAA 6 cut(s) 561, 593, 783, 1325, 1466, 1774
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 6 cut(s) 45, 119, 154, 408, 622, 700
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 2 cut(s) 43, 1108
TspRI CASTG 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 5 cut(s) 419, 459, 641, 818, 1664
XceI RCATGY 3 cut(s) 38, 1396, 1423
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 1075
XspI CTAG 5 cut(s) 174, 213, 455, 674, 1583
ZrmI AGTACT 1 cut(s) 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.