Rh7AG347400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006792
Physical Location & Seq
Reverse (-)
43989474 .. 44000898
11425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG347400.1

Sequence Viewer

Length: 1521 bp
ATGGAGGTGTCGGCACTCGGTGTTGGTGTCCAACATGTCCTCTGCTGCAACTCCGTTCCATTTATTCCCTCAGTGACACCTTGGAGCACAAGACTGAATACTTCTCATGTTTGTTGTGCCACAACTCTTGACAAAGAGCCCCTCCGCCGGCAGCCTCCCAATTCTGACACTAGGAGAGTCACAAGGCCTCACTCCAAGCAATATTTGGCTAGACAATCGGCAATTCTTCAAGTCCAACAGTCCTCTGACTTGGAATCTGCTCTTACAAGATTAGGTGGAAGTTTGAAGGTTCAAGACTTGAATGCCATAATACGCCATTTTGGGATGCTGAAAAGATGGCATGATCTTTCCCAGCTCTTTGAATGGATGCAACAGAATGGAAAAATTAGTGCGTCGTCATATAGCAGCTATATAAAATTCATGGGGAAGAGCCTCAATCCCGTAAAAGCACTAGAAATTTACACTAGCATTCAAGATGAATCAACCAAAAAGAACGTTCACATATGCAATTCGGTTCTAGGTAGTCTGGTCAGGAATGGTAAGTTTGATGGCAGTATTAAGTTATTTCACCAGATGAAGCAGGATGGCTTAACACCAGATGCTGTTACCTATAGTACGCTGCTTGCAGGTTGCATCAAATTCAAACACGGTTATTCAAAGGCATTAGAGCTAGTTCAAGAATTACAGAATAATGAGCTGCAGATGGACAGGGTAATATATGGTACACTTTTGGCTATCTGTGCTTCAAATAATAAATGGGAGGAAGCAGAAAGTTATTTTAAGCAGATGAAGGATGAAGGTCATATACCAAATGAATTCCATTACAGCTCTTTGCTCAATGCTTACTCTATCAGCGGGAACTACAAAAAGGCTGATGATTTGGTGCAAGATATGAAATCTGCAGGGTTAGTACCTAATAAGGTTATTTTGACAACTTTATTGAAGGCTTATGTCAGAGGTGGGTTGTTTGAAAAATCAAGAGAATTATTAGCCGAACTGGAAGCTTTGGGATATGCTGAAGATGAGATGCCATACTGTCTATTGATGGATGCCCTTGCTAAGGCTGGGCGTATACAAGATGCTAAATTGGTTTTTGATGAAATGAAGGAGAAATCCGTACGATCAGATGGATATTCCTACAGTATCATGATTTCTGCTTTCTGCCGAGGTGGGCTTGTAGATGATGCAAAGCAGTTGGCTAAGGATTTTGAAAGAACTTATGACAAATATGATTTGGTTATGTTGAATACAATGATCTGTGCCTATAGCAGAGCAGGTGAAATGGATAGTGTAATGGAAATGCTGAGAAAAATGGATGAATTAAAAATCATACCTGATAATAATACCTTCCATATTCTAATAAAGTACTTCTGTAAGGAGAAGTTATACATGCTTGCTTATAAGACCATGGAGGACATGCACAACAAAGGCTACCCATCAGATGAGGTACTCTCGAGATGCATCTTGTTGATAATACCTGTTGAACAGTGCCGTTTTGTTATTGTTCATTTTAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

506

Amino Acids

57.5

Weight (kDa)

8.09

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 147 - 263 4.6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 164 - 213 2.1e-13 PPR repeat family
PPR_long PF17177 219 - 360 6.6e-13 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 224 - 282 2.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 236 - 282 9.7e-09 PPR repeat family
PPR PF01535 238 - 267 6.8e-06 PPR repeat
PPR_2 PF13041 270 - 318 1e-07 PPR repeat family
TPR_24 PF23276 325 - 436 6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 347 - 389 2.3e-11 PPR repeat family
PPR_1 PF12854 376 - 399 5.8e-06 PPR repeat
PPR_2 PF13041 411 - 459 5.4e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1401
AarI CACCTGC 1 cut(s) 1265
Acc36I ACCTGC 2 cut(s) 617, 1265
AccI GTMKAC 1 cut(s) 1072
AciI CCGC 2 cut(s) 145, 855
AclI AACGTT 1 cut(s) 495
AcsI RAATTY 4 cut(s) 416, 456, 638, 815
AcuI CTGAAG 1 cut(s) 1038
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 6 cut(s) 616, 724, 912, 1119, 1367, 1449
AfiI CCNNNNNNNGG 2 cut(s) 147, 1060
AflIII ACRYGT 1 cut(s) 34
AluBI AGCT 6 cut(s) 355, 408, 670, 697, 828, 1004
AluI AGCT 6 cut(s) 355, 408, 670, 697, 828, 1004
Alw21I GWGCWC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 1453
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 45, 151, 405, 619, 697
ApoI RAATTY 4 cut(s) 416, 456, 638, 815
AsuHPI GGTGA 2 cut(s) 560, 1289
AvaI CYCGRG 1 cut(s) 1453
BanII GRGCYC 1 cut(s) 141
BarI GAAGNNNNNNTAC 2 cut(s) 789, 821
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 5 cut(s) 32, 163, 417, 606, 684
BccI CCATC 7 cut(s) 330, 542, 578, 697, 1039, 1121, 1444
BceAI ACGGC 1 cut(s) 1476
BfaI CTAG 6 cut(s) 171, 210, 452, 465, 518, 671
BfmI CTRYAG 5 cut(s) 610, 698, 900, 1138, 1264
BfuAI ACCTGC 2 cut(s) 617, 1265
BisI GCNGC 5 cut(s) 46, 152, 406, 620, 698
BlsI GCNGC 5 cut(s) 47, 153, 407, 621, 699
BmcAI AGTACT 1 cut(s) 1367
BmeT110I CYCGRG 1 cut(s) 1453
BplI GAGNNNNNCTC 2 cut(s) 1436, 1468
Bpu10I CCTNAGC 2 cut(s) 1059, 1200
BsaJI CCNNGG 3 cut(s) 80, 1165, 1407
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1060
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 1002
BseDI CCNNGG 3 cut(s) 80, 1165, 1407
BseGI GGATG 6 cut(s) 330, 372, 589, 799, 1054, 1321
BseLI CCNNNNNNNGG 2 cut(s) 147, 1060
BseMII CTCAG 2 cut(s) 84, 1295
BseNI ACTGG 1 cut(s) 1002
BseXI GCAGC 5 cut(s) 32, 163, 417, 606, 684
BseYI CCCAGC 2 cut(s) 351, 1064
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 1453
BsiSI CCGG 1 cut(s) 148
BsiWI CGTACG 1 cut(s) 1117
BslI CCNNNNNNNGG 2 cut(s) 147, 1060
BsmI GAATGC 2 cut(s) 307, 468
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 1453
Bsp1286I GDGCHC 2 cut(s) 89, 141
Bsp143I GATC 3 cut(s) 343, 1121, 1254
Bsp19I CCATGG 1 cut(s) 1407
BspACI CCGC 2 cut(s) 145, 855
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 83, 1296
BspHI TCATGA 1 cut(s) 1146
BspMAI CTGCAG 2 cut(s) 702, 904
BspMI ACCTGC 2 cut(s) 617, 1265
BspQI GCTCTTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 1 cut(s) 1002
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 80, 1165, 1407
BssMI GATC 3 cut(s) 343, 1121, 1254
BssNAI GTATAC 1 cut(s) 1073
BssT1I CCWWGG 2 cut(s) 80, 1407
Bst1107I GTATAC 1 cut(s) 1073
Bst4CI ACNGT 5 cut(s) 240, 650, 1037, 1142, 1488
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 149, 624, 1395
BstDEI CTNAG 4 cut(s) 70, 1059, 1200, 1304
BstDSI CCRYGG 1 cut(s) 1407
BstENI CCTNNNNNAGG 1 cut(s) 1058
BstF5I GGATG 6 cut(s) 330, 372, 589, 799, 1054, 1321
BstKTI GATC 3 cut(s) 346, 1124, 1257
BstMBI GATC 3 cut(s) 343, 1121, 1254
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNSI RCATGY 3 cut(s) 38, 1393, 1420
BstSFI CTRYAG 5 cut(s) 610, 698, 900, 1138, 1264
BstV1I GCAGC 5 cut(s) 32, 163, 417, 606, 684
BstZ17I GTATAC 1 cut(s) 1073
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 1407
BtsCI GGATG 6 cut(s) 330, 372, 589, 799, 1054, 1321
BtsIMutI CAGTG 2 cut(s) 78, 1493
BveI ACCTGC 2 cut(s) 617, 1265
Cac8I GCNNGC 3 cut(s) 149, 624, 1395
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 1146
Cfr10I RCCGGY 1 cut(s) 147
CseI GACGC 1 cut(s) 381
Csp6I GTAC 6 cut(s) 615, 723, 911, 1118, 1366, 1448
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 8 cut(s) 35, 107, 341, 421, 1147, 1390, 1408, 1417
CviQI GTAC 6 cut(s) 615, 723, 911, 1118, 1366, 1448
DdeI CTNAG 4 cut(s) 70, 1059, 1200, 1304
DpnI GATC 3 cut(s) 345, 1123, 1256
DpnII GATC 3 cut(s) 343, 1121, 1254
DraIII CACNNNGTG 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 80, 1407
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 1453
EcoNI CCTNNNNNAGG 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 815
EcoT14I CCWWGG 2 cut(s) 80, 1407
EcoT22I ATGCAT 1 cut(s) 1463
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 80, 1407
FaeI CATG 8 cut(s) 38, 110, 344, 424, 1150, 1393, 1411, 1420
FatI CATG 8 cut(s) 34, 106, 340, 420, 1146, 1389, 1407, 1416
FauI CCCGC 1 cut(s) 848
FauNDI CATATG 1 cut(s) 503
FblI GTMKAC 1 cut(s) 1072
Fnu4HI GCNGC 5 cut(s) 46, 152, 406, 620, 698
FokI GGATG 6 cut(s) 337, 379, 596, 806, 1061, 1328
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 5 cut(s) 46, 152, 406, 620, 698
FspBI CTAG 6 cut(s) 171, 210, 452, 465, 518, 671
GluI GCNGC 5 cut(s) 46, 152, 406, 620, 698
GsaI CCCAGC 2 cut(s) 355, 1068
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 381
Hin1II CATG 8 cut(s) 38, 110, 344, 424, 1150, 1393, 1411, 1420
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 3 cut(s) 177, 254, 479
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 560, 1289
Hpy166II GTNNAC 3 cut(s) 499, 725, 1073
Hpy188I TCNGA 5 cut(s) 166, 247, 956, 1126, 1441
Hpy188III TCNNGA 9 cut(s) 128, 293, 473, 532, 677, 978, 1147, 1453, 1455
Hpy8I GTNNAC 3 cut(s) 499, 725, 1073
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 6 cut(s) 280, 784, 791, 937, 1099, 1357
HpyCH4III ACNGT 5 cut(s) 240, 650, 1037, 1142, 1488
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 4 cut(s) 70, 1059, 1200, 1304
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 8 cut(s) 38, 110, 344, 424, 1150, 1393, 1411, 1420
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 3 cut(s) 343, 1121, 1254
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 5 cut(s) 32, 163, 417, 606, 684
MaeI CTAG 6 cut(s) 171, 210, 452, 465, 518, 671
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 73, 178, 604
MalI GATC 3 cut(s) 345, 1123, 1256
MboI GATC 3 cut(s) 343, 1121, 1254
MboII GAAGA 3 cut(s) 218, 439, 1031
MhlI GDGCHC 2 cut(s) 89, 141
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 2 cut(s) 55, 259
Mph1103I ATGCAT 1 cut(s) 1463
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 5 cut(s) 558, 590, 780, 1322, 1512
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 1 cut(s) 148
Mva1269I GAATGC 2 cut(s) 307, 468
MwoI GCNNNNNNNGC 1 cut(s) 740
NaeI GCCGGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 1407
NdeI CATATG 1 cut(s) 503
NdeII GATC 3 cut(s) 343, 1121, 1254
NgoMIV GCCGGC 1 cut(s) 147
NlaIII CATG 8 cut(s) 38, 110, 344, 424, 1150, 1393, 1411, 1420
NmeAIII GCCGAG 1 cut(s) 1190
NmuCI GTSAC 2 cut(s) 73, 178
NsiI ATGCAT 1 cut(s) 1463
NspI RCATGY 3 cut(s) 38, 1393, 1420
PaeR7I CTCGAG 1 cut(s) 1453
PagI TCATGA 1 cut(s) 1146
PaqCI CACCTGC 1 cut(s) 1265
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 422
PctI GAATGC 2 cut(s) 307, 468
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 254, 479
Pfl23II CGTACG 1 cut(s) 1117
PkrI GCNGC 5 cut(s) 47, 153, 407, 621, 699
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PscI ACATGT 1 cut(s) 34
PsiI TTATAA 1 cut(s) 1401
Psp1406I AACGTT 1 cut(s) 495
PspFI CCCAGC 2 cut(s) 351, 1064
PspLI CGTACG 1 cut(s) 1117
PstI CTGCAG 2 cut(s) 702, 904
PstNI CAGNNNCTG 1 cut(s) 602
RsaI GTAC 6 cut(s) 616, 724, 912, 1119, 1367, 1449
RsaNI GTAC 6 cut(s) 615, 723, 911, 1118, 1366, 1448
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 5 cut(s) 558, 590, 780, 1322, 1512
SatI GCNGC 5 cut(s) 46, 152, 406, 620, 698
Sau3AI GATC 3 cut(s) 343, 1121, 1254
ScaI AGTACT 1 cut(s) 1367
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 2 cut(s) 89, 141
SfcI CTRYAG 5 cut(s) 610, 698, 900, 1138, 1264
Sfr274I CTCGAG 1 cut(s) 1453
SlaI CTCGAG 1 cut(s) 1453
SmlI CTYRAG 1 cut(s) 1453
SmoI CTYRAG 1 cut(s) 1453
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 145, 855
SspI AATATT 1 cut(s) 203
SspMI CTAG 6 cut(s) 171, 210, 452, 465, 518, 671
StuI AGGCCT 1 cut(s) 187
StyI CCWWGG 2 cut(s) 80, 1407
TaaI ACNGT 5 cut(s) 240, 650, 1037, 1142, 1488
TaiI ACGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 1454
TatI WGTACW 1 cut(s) 1365
TfiI GAWTC 2 cut(s) 254, 479
Tru1I TTAA 5 cut(s) 558, 590, 780, 1322, 1512
Tru9I TTAA 5 cut(s) 558, 590, 780, 1322, 1512
TscAI CASTG 2 cut(s) 78, 1493
TseFI GTSAC 2 cut(s) 73, 178
TseI GCWGC 5 cut(s) 45, 151, 405, 619, 697
Tsp45I GTSAC 2 cut(s) 73, 178
TspGWI ACGGA 2 cut(s) 43, 1105
TspRI CASTG 2 cut(s) 78, 1493
XagI CCTNNNNNAGG 1 cut(s) 1058
XapI RAATTY 4 cut(s) 416, 456, 638, 815
XceI RCATGY 3 cut(s) 38, 1393, 1420
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 1453
XmiI GTMKAC 1 cut(s) 1072
XspI CTAG 6 cut(s) 171, 210, 452, 465, 518, 671
ZrmI AGTACT 1 cut(s) 1367
Zsp2I ATGCAT 1 cut(s) 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.