Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004793

Physical Location & Seq

Genomic Coordinates Reverse (-)

47109461 .. 47115892

Gene Structure 6432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G579000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGACAGAAAATTTGAAGCACTCACTAGATAGTATTAGTAGCTCCCATTCTCCGCATAGGCCTTCAAAGATTTCCAAAACCACCGACGATCTCAGCGACGACGAACAACAACAACAACAACAACAACAACCAGAATCGATGAGCCAACGCCCTGGAATTCAACGGTATCTACTCGCAATAGAGTACATTGGGACTCGCTTCTCGGGGTCTCAGCAACAGTCCAATTGCCGTACAGTAGTTGGCGTTCTTGAGGAGGCTTTTCACAAATTTATTGGCCAGCCGGTTTCAATGTTCTGTTCAAGTCGAACTGATGCAGGAGTCCATGCCTTGTCGAATGTTTGTCATGTAGATGTTGAGCGCATAAGCAAAAGGAAGCCTGGTGAAGTGTTAGAACCCCATGAACCTGCAGTAGTCAAAAGAGCTGTGAATCATTTCTTACAGAAGAATGAAGGTGACGTAATGGTGATTGATGTTCGCAGTGTCCCAGCTAATTTTCATGCTCGATATAAAGCCCAAGAGCGCACGTACTTCTACCGCTTGCTGTCTGGGGCAGAGCCTTTGTCAACCTTTGAAAAAGACCGGGCATGGCATGTACCAGAAGAGCTGAATCTTCGAGCTATGCAGGAAGCATGCAAGGTTCTGGTTGGACATCATGATTTTAGTTCCTTTAGGGCAGCAGGTTGTCAGGCCAAATCACCAATCAGAACATTAGATGAACTTAATGTGTCTGAGGTAGTGTCAACTCCTTGCTTTCCATCAATAATGGAGAGGAAACAAAACAATTTAGGAGAAGATCCTCATGCTGGCACGAACAAATCTGAGACTGACCCACCCCCTAGTTTCAATGGAGGGGCTGATCTAGGATTTGGCTTGAGAAAAAAACACCGTTGCTTTGTGGTAACAGCACGAGCACGCGCTTTTCTATACCACCAGGTCGAGGTTAGACTGCTTGTTGGTGTACTGAAAGCTGTTGGGACTGGAGATTTAAAAGTACCTGATGTTGAGAGGATCTTGAATGCAAAGACAGTGACTGCTGCTAGTCCCATGGCGCCTGCTTGTGGTCTATATCTTGGACATGTAAAATACGATTTGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

366

Amino Acids

40.61

Weight (kDa)

8.09

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09800 AT1G09800
fragaria_vesca	FvH4_3g33250
malus_domestica	MD08G1241400.v1.1 MD15G1435400.v1.1
prunus_persica	Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1
pyrus_communis	pycom08g20930 pycom15g38410
rosa_chinensis	RchiOBHm_Chr3g0481081 RchiOBHm_Chr5g0060601
rosa_laevigata	RLG00000035374
rosa_multiflora	Rmu_sc0001650.1_g000001 Rmu_sc0020761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020210 Rroxscaffold_7G00212020
rosa_rugosa	Rorug05G0331000
rosa_samantha	Rh3AG240400 Rh5AG395500 Rh5BG407800 Rh5CG432300 Rh5DG422700
rosa_wichuraiana	Rw5G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	412, 668
AccB1I	GGYRCC	1 cut(s)	1048
AccII	CGCG	1 cut(s)	915
AciI	CCGC	2 cut(s)	53, 535
AclWI	GGATC	2 cut(s)	788, 1016
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	10, 156, 266
AcyI	GRCGYC	1 cut(s)	1049
AfaI	GTAC	6 cut(s)	185, 232, 527, 594, 960, 993
AfiI	CCNNNNNNNGG	3 cut(s)	803, 937, 1058
AflIII	ACRYGT	1 cut(s)	1075
AgsI	TTSAA	8 cut(s)	16, 66, 161, 288, 300, 572, 844, 1015
AjnI	CCWGG	3 cut(s)	151, 376, 930
AluBI	AGCT	6 cut(s)	42, 422, 488, 604, 617, 968
AluI	AGCT	6 cut(s)	42, 422, 488, 604, 617, 968
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	2 cut(s)	213, 815
AlwI	GGATC	2 cut(s)	788, 1016
AlwNI	CAGNNNCTG	1 cut(s)	1031
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	3 cut(s)	59, 274, 687
ApeKI	GCWGC	2 cut(s)	674, 1034
ApoI	RAATTY	3 cut(s)	10, 156, 266
ArsI	GACNNNNNNTTYG	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	4 cut(s)	360, 522, 917, 1051
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	4 cut(s)	392, 464, 475, 687
AvaI	CYCGRG	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	1048
BauI	CACGAG	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	2 cut(s)	686, 1021
BccI	CCATC	1 cut(s)	763
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	3 cut(s)	153, 378, 932
BcnI	CCSGG	1 cut(s)	581
BcoDI	GTCTC	2 cut(s)	213, 815
BfaI	CTAG	4 cut(s)	26, 837, 860, 1038
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	1052
BfuAI	ACCTGC	2 cut(s)	412, 668
BisI	GCNGC	2 cut(s)	675, 1035
BlsI	GCNGC	2 cut(s)	676, 1036
Bme1390I	CCNGG	4 cut(s)	153, 378, 581, 932
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	1050
BmrFI	CCNGG	4 cut(s)	153, 378, 581, 932
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	999
BpuEI	CTTGAG	2 cut(s)	269, 892
BpuMI	CCSGG	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	151, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	803, 937, 1058
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	982
BseBI	CCWGG	3 cut(s)	153, 378, 932
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	151, 1044
BseLI	CCNNNNNNNGG	3 cut(s)	803, 937, 1058
BseMII	CTCAG	4 cut(s)	106, 224, 720, 810
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	686, 1021
BseYI	CCCAGC	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	61, 276, 689
BshNI	GGYRCC	1 cut(s)	1048
BshVI	ATCGAT	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	281, 580
BslFI	GGGAC	4 cut(s)	205, 467, 988, 1026
BslI	CCNNNNNNNGG	3 cut(s)	803, 937, 1058
BsmAI	GTCTC	2 cut(s)	213, 815
BsmFI	GGGAC	4 cut(s)	205, 467, 988, 1026
BsmI	GAATGC	1 cut(s)	1021
BsnI	GGCC	3 cut(s)	61, 276, 689
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	88, 793, 856, 1008
Bsp19I	CCATGG	1 cut(s)	1044
BspACI	CCGC	2 cut(s)	53, 535
BspANI	GGCC	3 cut(s)	61, 276, 689
BspCNI	CTCAG	4 cut(s)	105, 223, 721, 811
BspDI	ATCGAT	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	1050
BspMAI	CTGCAG	1 cut(s)	409
BspMI	ACCTGC	2 cut(s)	412, 668
BspPI	GGATC	2 cut(s)	788, 1016
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	1 cut(s)	1048
BspTNI	GGTCTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	982
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	151, 1044
BssMI	GATC	4 cut(s)	88, 793, 856, 1008
BssNI	GRCGYC	1 cut(s)	1049
BssSI	CACGAG	1 cut(s)	906
BssT1I	CCWWGG	1 cut(s)	1044
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	3 cut(s)	153, 378, 932
Bst4CI	ACNGT	5 cut(s)	165, 219, 235, 887, 1027
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	1049
BstBAI	YACGTR	1 cut(s)	525
BstC8I	GCNNGC	6 cut(s)	278, 539, 631, 805, 913, 1053
BstDEI	CTNAG	4 cut(s)	92, 210, 729, 819
BstDSI	CCRYGG	1 cut(s)	1044
BstFNI	CGCG	1 cut(s)	915
BstH2I	RGCGCY	1 cut(s)	1052
BstHHI	GCGC	4 cut(s)	360, 522, 917, 1051
BstKTI	GATC	4 cut(s)	91, 796, 859, 1011
BstMAI	GTCTC	2 cut(s)	213, 815
BstMBI	GATC	4 cut(s)	88, 793, 856, 1008
BstNI	CCWGG	3 cut(s)	153, 378, 932
BstNSI	RCATGY	3 cut(s)	593, 633, 1079
BstSCI	CCNGG	4 cut(s)	151, 376, 579, 930
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	686, 1021
BstX2I	RGATCY	2 cut(s)	793, 1008
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	2 cut(s)	793, 1008
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	61, 276, 689
BsuTUI	ATCGAT	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	1044
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	484, 1032
BveI	ACCTGC	2 cut(s)	412, 668
Cac8I	GCNNGC	6 cut(s)	278, 539, 631, 805, 913, 1053
CaiI	CAGNNNCTG	1 cut(s)	1031
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	4 cut(s)	360, 522, 917, 1051
Cfr10I	RCCGGY	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	930
Csp6I	GTAC	6 cut(s)	184, 231, 526, 593, 959, 992
CviQI	GTAC	6 cut(s)	184, 231, 526, 593, 959, 992
DdeI	CTNAG	4 cut(s)	92, 210, 729, 819
DinI	GGCGCC	1 cut(s)	1050
DpnI	GATC	4 cut(s)	90, 795, 858, 1010
DpnII	GATC	4 cut(s)	88, 793, 856, 1008
DraI	TTTAAA	1 cut(s)	987
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	1044
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	156
EcoRII	CCWGG	3 cut(s)	151, 376, 930
EcoT14I	CCWWGG	1 cut(s)	1044
EgeI	GGCGCC	1 cut(s)	1050
EheI	GGCGCC	1 cut(s)	1050
ErhI	CCWWGG	1 cut(s)	1044
FaqI	GGGAC	4 cut(s)	205, 467, 988, 1026
Fnu4HI	GCNGC	2 cut(s)	675, 1035
Fsp4HI	GCNGC	2 cut(s)	675, 1035
FspBI	CTAG	4 cut(s)	26, 837, 860, 1038
GlaI	GCGC	4 cut(s)	359, 521, 916, 1050
GluI	GCNGC	2 cut(s)	675, 1035
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	999
HaeII	RGCGCY	1 cut(s)	1052
HaeIII	GGCC	3 cut(s)	61, 276, 689
HapII	CCGG	2 cut(s)	281, 580
HhaI	GCGC	4 cut(s)	360, 522, 917, 1051
Hin1I	GRCGYC	1 cut(s)	1049
Hin6I	GCGC	4 cut(s)	358, 520, 915, 1049
HinP1I	GCGC	4 cut(s)	358, 520, 915, 1049
HincII	GTYRAC	2 cut(s)	564, 741
HindII	GTYRAC	2 cut(s)	564, 741
HinfI	GANTC	5 cut(s)	134, 193, 318, 427, 607
HpaII	CCGG	2 cut(s)	281, 580
HphI	GGTGA	4 cut(s)	392, 464, 475, 687
Hpy166II	GTNNAC	3 cut(s)	564, 741, 959
Hpy188I	TCNGA	3 cut(s)	704, 730, 820
Hpy188III	TCNNGA	3 cut(s)	248, 653, 1012
Hpy8I	GTNNAC	3 cut(s)	564, 741, 959
Hpy99I	CGWCG	3 cut(s)	89, 101, 104
HpyAV	CCTTC	2 cut(s)	72, 443
HpyCH4III	ACNGT	5 cut(s)	165, 219, 235, 887, 1027
HpyCH4IV	ACGT	2 cut(s)	456, 524
HpyCH4V	TGCA	5 cut(s)	314, 407, 622, 633, 1019
HpyF3I	CTNAG	4 cut(s)	92, 210, 729, 819
HpySE526I	ACGT	2 cut(s)	456, 524
Hsp92I	GRCGYC	1 cut(s)	1049
HspAI	GCGC	4 cut(s)	358, 520, 915, 1049
KasI	GGCGCC	1 cut(s)	1048
Kzo9I	GATC	4 cut(s)	88, 793, 856, 1008
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	2 cut(s)	686, 1021
LweI	GCATC	1 cut(s)	301
MabI	ACCWGGT	1 cut(s)	930
MaeI	CTAG	4 cut(s)	26, 837, 860, 1038
MaeII	ACGT	2 cut(s)	456, 524
MaeIII	GTNAC	3 cut(s)	452, 898, 1027
MalI	GATC	4 cut(s)	90, 795, 858, 1010
MboI	GATC	4 cut(s)	88, 793, 856, 1008
MboII	GAAGA	4 cut(s)	454, 602, 611, 803
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	793, 1008
MhlI	GDGCHC	1 cut(s)	913
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	10, 156, 223, 266, 490, 781
MluNI	TGGCCA	1 cut(s)	276
Mly113I	GGCGCC	1 cut(s)	1049
MlyI	GAGTC	2 cut(s)	187, 327
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	8 cut(s)	244, 247, 724, 762, 807, 842, 931, 999
Mox20I	TGGCCA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	720, 986
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	2 cut(s)	281, 580
MspR9I	CCNGG	4 cut(s)	153, 378, 581, 932
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	1021
MvaI	CCWGG	3 cut(s)	153, 378, 932
MvnI	CGCG	1 cut(s)	915
NarI	GGCGCC	1 cut(s)	1049
NciI	CCSGG	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	1044
NdeII	GATC	4 cut(s)	88, 793, 856, 1008
NlaIV	GGNNCC	1 cut(s)	1050
NmuCI	GTSAC	2 cut(s)	452, 1027
NspI	RCATGY	3 cut(s)	593, 633, 1079
PaeI	GCATGC	1 cut(s)	633
PagI	TCATGA	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	61
PciI	ACATGT	1 cut(s)	1075
PciSI	GCTCTTC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	1021
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	134, 427, 607
PkrI	GCNGC	2 cut(s)	676, 1036
PleI	GAGTC	2 cut(s)	187, 326
PluTI	GGCGCC	1 cut(s)	1052
PpsI	GAGTC	2 cut(s)	187, 326
Ppu21I	YACGTR	1 cut(s)	525
PscI	ACATGT	1 cut(s)	1075
Psp6I	CCWGG	3 cut(s)	151, 376, 930
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	3 cut(s)	151, 376, 930
PspN4I	GGNNCC	1 cut(s)	1050
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	2 cut(s)	793, 1008
RsaI	GTAC	6 cut(s)	185, 232, 527, 594, 960, 993
RsaNI	GTAC	6 cut(s)	184, 231, 526, 593, 959, 992
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	720, 986
SatI	GCNGC	2 cut(s)	675, 1035
Sau3AI	GATC	4 cut(s)	88, 793, 856, 1008
SchI	GAGTC	2 cut(s)	187, 327
ScrFI	CCNGG	4 cut(s)	153, 378, 581, 932
SduI	GDGCHC	1 cut(s)	913
SexAI	ACCWGGT	1 cut(s)	930
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	405
SfoI	GGCGCC	1 cut(s)	1050
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	248, 871
SmoI	CTYRAG	2 cut(s)	248, 871
SphI	GCATGC	1 cut(s)	633
Sse9I	AATT	6 cut(s)	10, 156, 223, 266, 490, 781
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	53, 535
SspDI	GGCGCC	1 cut(s)	1048
SspMI	CTAG	4 cut(s)	26, 837, 860, 1038
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	4 cut(s)	151, 376, 579, 930
StyI	CCWWGG	1 cut(s)	1044
TaaI	ACNGT	5 cut(s)	165, 219, 235, 887, 1027
TaiI	ACGT	2 cut(s)	459, 527
TaqI	TCGA	6 cut(s)	137, 304, 332, 502, 613, 936
TasI	AATT	6 cut(s)	10, 156, 223, 266, 490, 781
TatI	WGTACW	2 cut(s)	183, 958
TfiI	GAWTC	3 cut(s)	134, 427, 607
Tru1I	TTAA	2 cut(s)	720, 986
Tru9I	TTAA	2 cut(s)	720, 986
TscAI	CASTG	2 cut(s)	484, 1032
TseFI	GTSAC	2 cut(s)	452, 1027
TseI	GCWGC	2 cut(s)	674, 1034
Tsp45I	GTSAC	2 cut(s)	452, 1027
TspDTI	ATGAA	4 cut(s)	414, 462, 485, 729
TspRI	CASTG	2 cut(s)	484, 1032
XapI	RAATTY	3 cut(s)	10, 156, 266
XceI	RCATGY	3 cut(s)	593, 633, 1079
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	4 cut(s)	26, 837, 860, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.