Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004793

Physical Location & Seq

Genomic Coordinates Reverse (-)

20524576 .. 20528360

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCAGAAAATCTTAAGCACCCACTCGAACTAGATAGCATCAGTAACTCCCAATCTCCCCAAAGGCCTCCAAAGGTCTCCAAAACCGCCGACGATCTCAGCGTCGGCGATCAGGAGTCCCAGAAACCTCAACCGATGAGCCAACAGGCTCGAATCCAGCGGTATCTACTGGCAATCGAGTACATTGGTACTCGCTTTTCGGGCTCGCAGCAGCAGTCCAATTGCCGCACAGTTGTTGGAGTCCTTGAGGAGGCATTTCGTAAATTTATTGGCCAGCCGGTTTCGATATTCTGTTCCAGTCGAACTGATGCAGGAGTCCATGCCTTGTCGAATGTTTGTCATGTAGATGTCGAGCGCATAAGCAAAAGGAAGCCTGGTGAAGTGTTAGAACCCCATGAACCTTCAGTTGTCAAAAGAGCTGTGAATCATTTCTTACAGAAGAATGAAGGTGATGTAATGGTGATAGATGTTCGAAGTGTTCCAGCTGATTTTCATGCTCGATATAAAGCCCAAGAGCGCACGTATTTCTACCGTCTTCTGTTTGGACCAGAGCCTTTGTCAACCTTTGAAAAAGACCGCGCATGGCATGTACCCGAGGAGCTGGATCTTTGTGCTATGCAGGAAGCATGCAAAGTTTTGGTTGGACATCATGATTTTAGTTCCTTTAGGGCAGCGGGTTGTCAGGCAAAATCACCGATCAGAACGTTGGATGAACTTAATGTTTCTGAGGTAGTGTCAAGTCCTTATTTTCCATCAATAATGGAGAGGAAACAAAACAATTTGGTGGAGGAAGATCCTCATGCCCACGCTAACAAATCTGAGACTGATACATCCTCTAGTTTCAATGGAGGACTAGGATTTGGCATGAGAAAAAAGCACCGTTGCTTTGTGGTAACCGCACGAGCACGTTCTTTTCTGTACCACCAGGTTAGACTGCTTGTTGGTGTACTCAAATGTGTTGGCACCGGAGATTTAAGAATAACTGATGTTGAGAGGATCTTGAATGCAAAGATGGTGACTGCTGCTAGTCCCATGGCGCCTGCTTGTGGTCTGTACCTTGGACAAGTGAAATACGATTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

362

Amino Acids

40.39

Weight (kDa)

8.31

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09800 AT1G09800
fragaria_vesca	FvH4_3g33250
malus_domestica	MD08G1241400.v1.1 MD15G1435400.v1.1
prunus_persica	Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1
pyrus_communis	pycom08g20930 pycom15g38410
rosa_chinensis	RchiOBHm_Chr3g0481081 RchiOBHm_Chr5g0060601
rosa_laevigata	RLG00000035374
rosa_multiflora	Rmu_sc0001650.1_g000001 Rmu_sc0020761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020210 Rroxscaffold_7G00212020
rosa_rugosa	Rorug05G0331000
rosa_samantha	Rh3AG240400 Rh5AG395500 Rh5BG407800 Rh5CG432300 Rh5DG422700
rosa_wichuraiana	Rw5G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	962, 1036
AccII	CGCG	1 cut(s)	579
AciI	CCGC	6 cut(s)	87, 160, 226, 577, 674, 897
AclI	AACGTT	1 cut(s)	704
AclWI	GGATC	3 cut(s)	612, 788, 1004
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	1037
AfaI	GTAC	6 cut(s)	182, 190, 591, 920, 948, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	250, 1046
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	569, 844, 1003
AjnI	CCWGG	2 cut(s)	373, 924
AluBI	AGCT	3 cut(s)	419, 485, 601
AluI	AGCT	3 cut(s)	419, 485, 601
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	2 cut(s)	82, 815
AlwI	GGATC	3 cut(s)	612, 788, 1004
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	2 cut(s)	65, 271
ApeKI	GCWGC	4 cut(s)	208, 211, 671, 1022
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	4 cut(s)	357, 519, 581, 1039
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	5 cut(s)	389, 461, 472, 684, 1027
AsuII	TTCGAA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	2 cut(s)	962, 1036
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	4 cut(s)	220, 223, 683, 1009
BccI	CCATC	2 cut(s)	760, 1006
BciT130I	CCWGG	2 cut(s)	375, 926
BcoDI	GTCTC	2 cut(s)	82, 815
BfaI	CTAG	4 cut(s)	32, 837, 854, 1026
BfoI	RGCGCY	1 cut(s)	1040
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	5 cut(s)	209, 212, 226, 672, 1023
BlsI	GCNGC	5 cut(s)	210, 213, 227, 673, 1024
Bme1390I	CCNGG	2 cut(s)	375, 926
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	964, 1038
BmrFI	CCNGG	2 cut(s)	375, 926
BmsI	GCATC	2 cut(s)	48, 298
BpiI	GAAGAC	1 cut(s)	527
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	594, 1032, 1057
BsaWI	WCCGGW	1 cut(s)	965
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 1046
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	174, 297
BseBI	CCWGG	2 cut(s)	375, 926
BseDI	CCNNGG	3 cut(s)	594, 1032, 1057
BseGI	GGATG	2 cut(s)	715, 830
BseLI	CCNNNNNNNGG	2 cut(s)	250, 1046
BseMII	CTCAG	3 cut(s)	112, 717, 810
BseNI	ACTGG	2 cut(s)	174, 297
BseRI	GAGGAG	2 cut(s)	263, 611
BseXI	GCAGC	4 cut(s)	220, 223, 683, 1009
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	2 cut(s)	67, 273
BshNI	GGYRCC	2 cut(s)	962, 1036
BsiHKAI	GWGCWC	1 cut(s)	907
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	278, 966
BslFI	GGGAC	2 cut(s)	103, 1014
BslI	CCNNNNNNNGG	2 cut(s)	250, 1046
BsmAI	GTCTC	2 cut(s)	82, 815
BsmFI	GGGAC	2 cut(s)	103, 1014
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	2 cut(s)	67, 273
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	2 cut(s)	206, 907
Bsp143I	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
Bsp19I	CCATGG	1 cut(s)	1032
BspACI	CCGC	6 cut(s)	87, 160, 226, 577, 674, 897
BspANI	GGCC	2 cut(s)	67, 273
BspCNI	CTCAG	3 cut(s)	111, 718, 811
BspFNI	CGCG	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	964, 1038
BspPI	GGATC	3 cut(s)	612, 788, 1004
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	2 cut(s)	962, 1036
BspTI	CTTAAG	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	174, 297
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	594, 1032, 1057
BssMI	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
BssNI	GRCGYC	1 cut(s)	1037
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	2 cut(s)	1032, 1057
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	2 cut(s)	375, 926
Bst4CI	ACNGT	3 cut(s)	232, 533, 881
BstACI	GRCGYC	1 cut(s)	1037
BstAFI	CTTAAG	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	4 cut(s)	206, 275, 628, 1041
BstDEI	CTNAG	3 cut(s)	98, 726, 819
BstDSI	CCRYGG	1 cut(s)	1032
BstEII	GGTNACC	1 cut(s)	892
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	715, 830
BstFNI	CGCG	1 cut(s)	579
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	4 cut(s)	357, 519, 581, 1039
BstKTI	GATC	6 cut(s)	97, 112, 607, 699, 796, 999
BstMAI	GTCTC	2 cut(s)	82, 815
BstMBI	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNI	CCWGG	2 cut(s)	375, 926
BstNSI	RCATGY	2 cut(s)	590, 630
BstPI	GGTNACC	1 cut(s)	892
BstSCI	CCNGG	2 cut(s)	373, 924
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	4 cut(s)	220, 223, 683, 1009
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	3 cut(s)	604, 793, 996
BstYI	RGATCY	3 cut(s)	604, 793, 996
BsuRI	GGCC	2 cut(s)	67, 273
BtgI	CCRYGG	1 cut(s)	1032
BtsCI	GGATG	2 cut(s)	715, 830
Cac8I	GCNNGC	4 cut(s)	206, 275, 628, 1041
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	4 cut(s)	357, 519, 581, 1039
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	924
Csp6I	GTAC	6 cut(s)	181, 189, 590, 919, 947, 1054
CviQI	GTAC	6 cut(s)	181, 189, 590, 919, 947, 1054
DdeI	CTNAG	3 cut(s)	98, 726, 819
DinI	GGCGCC	1 cut(s)	1038
DpnI	GATC	6 cut(s)	96, 111, 606, 698, 795, 998
DpnII	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	1032, 1057
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	593
Eco91I	GGTNACC	1 cut(s)	892
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	892
EcoRII	CCWGG	2 cut(s)	373, 924
EcoT14I	CCWWGG	2 cut(s)	1032, 1057
EcoT38I	GRGCYC	1 cut(s)	206
EgeI	GGCGCC	1 cut(s)	1038
EheI	GGCGCC	1 cut(s)	1038
ErhI	CCWWGG	2 cut(s)	1032, 1057
FaqI	GGGAC	2 cut(s)	103, 1014
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	5 cut(s)	209, 212, 226, 672, 1023
FokI	GGATG	2 cut(s)	722, 817
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	5 cut(s)	209, 212, 226, 672, 1023
FspBI	CTAG	4 cut(s)	32, 837, 854, 1026
GlaI	GCGC	4 cut(s)	356, 518, 580, 1038
GluI	GCNGC	5 cut(s)	209, 212, 226, 672, 1023
HaeII	RGCGCY	1 cut(s)	1040
HaeIII	GGCC	2 cut(s)	67, 273
HapII	CCGG	2 cut(s)	278, 966
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	4 cut(s)	357, 519, 581, 1039
Hin1I	GRCGYC	1 cut(s)	1037
Hin6I	GCGC	4 cut(s)	355, 517, 579, 1037
HinP1I	GCGC	4 cut(s)	355, 517, 579, 1037
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	5 cut(s)	116, 153, 240, 315, 424
HpaII	CCGG	2 cut(s)	278, 966
HphI	GGTGA	5 cut(s)	389, 461, 472, 684, 1027
Hpy166II	GTNNAC	2 cut(s)	561, 947
Hpy188I	TCNGA	4 cut(s)	7, 701, 727, 820
Hpy188III	TCNNGA	3 cut(s)	113, 650, 1000
Hpy8I	GTNNAC	2 cut(s)	561, 947
Hpy99I	CGWCG	2 cut(s)	95, 107
HpyAV	CCTTC	2 cut(s)	411, 440
HpyCH4III	ACNGT	3 cut(s)	232, 533, 881
HpyCH4IV	ACGT	3 cut(s)	521, 704, 907
HpyCH4V	TGCA	4 cut(s)	311, 619, 630, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	3 cut(s)	98, 726, 819
HpySE526I	ACGT	3 cut(s)	521, 704, 907
Hsp92I	GRCGYC	1 cut(s)	1037
HspAI	GCGC	4 cut(s)	355, 517, 579, 1037
KasI	GGCGCC	1 cut(s)	1036
Kzo9I	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	4 cut(s)	220, 223, 683, 1009
LweI	GCATC	2 cut(s)	48, 298
MabI	ACCWGGT	1 cut(s)	924
MaeI	CTAG	4 cut(s)	32, 837, 854, 1026
MaeII	ACGT	3 cut(s)	521, 704, 907
MaeIII	GTNAC	3 cut(s)	44, 892, 1015
MalI	GATC	6 cut(s)	96, 111, 606, 698, 795, 998
MboI	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
MboII	GAAGA	3 cut(s)	451, 527, 803
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	3 cut(s)	604, 793, 996
MhlI	GDGCHC	2 cut(s)	206, 907
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	3 cut(s)	220, 263, 778
MluNI	TGGCCA	1 cut(s)	273
Mly113I	GGCGCC	1 cut(s)	1037
MlyI	GAGTC	3 cut(s)	125, 249, 324
MmeI	TCCRAC	3 cut(s)	217, 622, 687
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	3 cut(s)	15, 717, 974
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	3 cut(s)	160, 485, 674
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	278, 966
MspR9I	CCNGG	2 cut(s)	375, 926
MunI	CAATTG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	2 cut(s)	375, 926
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	1037
NcoI	CCATGG	1 cut(s)	1032
NdeII	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
NlaIV	GGNNCC	2 cut(s)	964, 1038
NmuCI	GTSAC	1 cut(s)	1015
NspI	RCATGY	2 cut(s)	590, 630
NspV	TTCGAA	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	630
PagI	TCATGA	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	153, 424
PkrI	GCNGC	5 cut(s)	210, 213, 227, 673, 1024
PleI	GAGTC	3 cut(s)	124, 248, 323
PluTI	GGCGCC	1 cut(s)	1040
PpsI	GAGTC	3 cut(s)	124, 248, 323
Ppu21I	YACGTR	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	704
Psp6I	CCWGG	2 cut(s)	373, 924
PspEI	GGTNACC	1 cut(s)	892
PspGI	CCWGG	2 cut(s)	373, 924
PspN4I	GGNNCC	2 cut(s)	964, 1038
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	3 cut(s)	604, 793, 996
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	6 cut(s)	182, 190, 591, 920, 948, 1055
RsaNI	GTAC	6 cut(s)	181, 189, 590, 919, 947, 1054
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	15, 717, 974
SatI	GCNGC	5 cut(s)	209, 212, 226, 672, 1023
Sau3AI	GATC	6 cut(s)	94, 109, 604, 696, 793, 996
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	125, 249, 324
ScrFI	CCNGG	2 cut(s)	375, 926
SduI	GDGCHC	2 cut(s)	206, 907
SexAI	ACCWGGT	1 cut(s)	924
SfaNI	GCATC	2 cut(s)	48, 298
SfoI	GGCGCC	1 cut(s)	1038
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	14, 245
SmoI	CTYRAG	2 cut(s)	14, 245
SphI	GCATGC	1 cut(s)	630
Sse9I	AATT	3 cut(s)	220, 263, 778
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	6 cut(s)	87, 160, 226, 577, 674, 897
SspDI	GGCGCC	1 cut(s)	1036
SspMI	CTAG	4 cut(s)	32, 837, 854, 1026
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	373, 924
StyI	CCWWGG	2 cut(s)	1032, 1057
TaaI	ACNGT	3 cut(s)	232, 533, 881
TaiI	ACGT	3 cut(s)	524, 707, 910
TaqI	TCGA	9 cut(s)	27, 151, 177, 284, 301, 329, 351, 472, 499
TasI	AATT	3 cut(s)	220, 263, 778
TatI	WGTACW	2 cut(s)	180, 946
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	153, 424
Tru1I	TTAA	3 cut(s)	15, 717, 974
Tru9I	TTAA	3 cut(s)	15, 717, 974
TseFI	GTSAC	1 cut(s)	1015
TseI	GCWGC	4 cut(s)	208, 211, 671, 1022
Tsp45I	GTSAC	1 cut(s)	1015
TspDTI	ATGAA	4 cut(s)	411, 459, 482, 726
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	2 cut(s)	590, 630
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	4 cut(s)	32, 837, 854, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.