Rorug05G0331000

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001754
Physical Location & Seq
Reverse (-)
39982304 .. 40035034
52731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0331000.1

Sequence Viewer

Length: 1041 bp
ATGCAGTCGCTACCAACAACACCATCGAAACGCAATACCAGTCCTTCCCTTTTCTTCCGGTGCTTAGACCTCGTCCTTCCATGGCTAACCCCACAAGAACTGGCCATGGCATCTCTGACCTGCACCACCCTCCGCAACCTCTCAAAGTCCATCACTCTCCGCCGCGTCTCCGACGCTTCCGGATCCCTCGAGCCACATCCCATCCCATTCCATAACTCACTCGATCAACACCCTTATGCCTACTTCATCTACACCCCTTCCTCTCTAACCCCATCATCTTCTTCTTCTTCTCCTACACTGCTTCGCCAACCGTGGGGTTCCAGTCACCACGAGTCAGACTCGGACACCAGAACTGAAACGTCGTCGTTGCGTTTTGTTGACGAATCGGGAAACTGTGCGTCGTCTGGGTGTGAATGTGAAGAGACATGTGAGGATGGGAAAGAAGGGTGTCCGTGTGTTGTTGGCTTTCCTGGCTTCGACGGCGTCGTTTTCGAGTGTGGACGCAGTTGTGGATGCCGGTTAAGTTGTGGGAATCGGTTGACTCAGACGGGGATTCAGGTTAAGTTGAAGATTGTGAGGGACAGAAGAAAAGGGTGGGGTTTGTATGCCGACCAGTTCATCCCAAAGGGTCGGTTTGTGTGCGAGTATGCAGGTGAACTATTGACAACAAAGGAATCAAGACTGCGGCAAGAAATGTATGATGAACTTTCGTCGGGTGGTCATTTCTCCCCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCCAAAAAGGCATGTCTGAGACTCAATATTGATGCCACAAGAATCGGAAATGTCTCAAGGTTCATCAACCATTCTTGCGATGGAGGTAATTTGTCCACAGCTCTTGTTAGAAGCTCAGGGGCTTTGCTTCCACGTCTTTGCTTTTTTGCTTCAGATGACATAAAAGTGGATGAAGAGCTTACGTTTAGCTATGGTGAAACTAGACTAAACTCCAAGGGTTTGCGGTGTTTTTGTGCAAGCTCTTGCTGTTTTGGTATATTACCATCGGAGCAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

346

Amino Acids

38.03

Weight (kDa)

7.02

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 198 - 319 6.3e-21 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
Acc36I ACCTGC 2 cut(s) 128, 641
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 5 cut(s) 133, 160, 163, 685, 985
AclWI GGATC 2 cut(s) 177, 190
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 897
AcyI GRCGYC 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 1 cut(s) 568
AjiI CACGTC 1 cut(s) 896
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 5 cut(s) 863, 876, 940, 951, 1002
AluI AGCT 5 cut(s) 863, 876, 940, 951, 1002
Alw26I GTCTC 4 cut(s) 172, 416, 775, 820
AlwI GGATC 2 cut(s) 177, 190
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 317, 665, 968
AvaI CYCGRG 1 cut(s) 188
BalI TGGCCA 1 cut(s) 104
BamHI GGATCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 329
BccI CCATC 8 cut(s) 31, 158, 209, 280, 428, 769, 836, 1033
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 4 cut(s) 172, 416, 775, 820
BfaI CTAG 1 cut(s) 963
BfuAI ACCTGC 2 cut(s) 128, 641
BisI GCNGC 2 cut(s) 163, 686
BlsI GCNGC 2 cut(s) 164, 687
Bme1390I CCNGG 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 896
BmiI GGNNCC 2 cut(s) 184, 319
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 4 cut(s) 119, 503, 763, 784
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu10I CCTNAGC 1 cut(s) 877
BpuEI CTTGAG 1 cut(s) 802
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 4 cut(s) 80, 105, 311, 975
BsaWI WCCGGW 2 cut(s) 57, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 4 cut(s) 39, 105, 321, 613
BseAI TCCGGA 1 cut(s) 179
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 4 cut(s) 80, 105, 311, 975
BseGI GGATG 7 cut(s) 196, 201, 439, 518, 618, 761, 937
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 557, 770, 891
BseNI ACTGG 4 cut(s) 39, 105, 321, 613
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 58, 180, 517
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 4 cut(s) 172, 416, 775, 820
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 2 cut(s) 182, 223
Bsp19I CCATGG 2 cut(s) 80, 105
BspACI CCGC 5 cut(s) 133, 160, 163, 685, 985
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 3 cut(s) 556, 771, 890
BspEI TCCGGA 1 cut(s) 179
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 184, 319
BspMI ACCTGC 2 cut(s) 128, 641
BspPI GGATC 2 cut(s) 177, 190
BspQI GCTCTTC 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 4 cut(s) 39, 105, 321, 613
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 4 cut(s) 80, 105, 311, 975
BssMI GATC 2 cut(s) 182, 223
BssNI GRCGYC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 3 cut(s) 80, 105, 975
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 312, 395
Bst6I CTCTTC 2 cut(s) 414, 930
BstACI GRCGYC 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 1000, 1035
BstDEI CTNAG 4 cut(s) 64, 543, 779, 877
BstDSI CCRYGG 3 cut(s) 80, 105, 311
BstF5I GGATG 7 cut(s) 196, 201, 439, 518, 618, 761, 937
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 2 cut(s) 185, 226
BstMAI GTCTC 4 cut(s) 172, 416, 775, 820
BstMBI GATC 2 cut(s) 182, 223
BstMWI GCNNNNNNNGC 2 cut(s) 471, 480
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 2 cut(s) 429, 777
BstSCI CCNGG 1 cut(s) 469
BstUI CGCG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 3 cut(s) 80, 105, 311
BtgZI GCGATG 1 cut(s) 855
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 7 cut(s) 196, 201, 439, 518, 618, 761, 937
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 2 cut(s) 128, 641
Cac8I GCNNGC 2 cut(s) 1000, 1035
Cfr10I RCCGGY 1 cut(s) 516
CseI GACGC 5 cut(s) 154, 182, 387, 472, 510
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 4 cut(s) 81, 106, 426, 774
DdeI CTNAG 4 cut(s) 64, 543, 779, 877
DpnI GATC 2 cut(s) 184, 225
DpnII GATC 2 cut(s) 182, 223
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 414, 930
EarI CTCTTC 2 cut(s) 414, 930
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 80, 105, 975
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 80, 105, 975
ErhI CCWWGG 3 cut(s) 80, 105, 975
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 84, 109, 429, 777
FaqI GGGAC 1 cut(s) 593
FatI CATG 4 cut(s) 80, 105, 425, 773
Fnu4HI GCNGC 2 cut(s) 163, 686
FokI GGATG 7 cut(s) 183, 188, 446, 525, 605, 748, 944
Fsp4HI GCNGC 2 cut(s) 163, 686
FspBI CTAG 1 cut(s) 963
GluI GCNGC 2 cut(s) 163, 686
HaeIII GGCC 1 cut(s) 104
HapII CCGG 3 cut(s) 58, 180, 517
HgaI GACGC 5 cut(s) 154, 182, 387, 472, 510
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 4 cut(s) 84, 109, 429, 777
HincII GTYRAC 2 cut(s) 379, 540
HindII GTYRAC 2 cut(s) 379, 540
HinfI GANTC 9 cut(s) 332, 338, 383, 532, 541, 553, 674, 783, 804
HpaII CCGG 3 cut(s) 58, 180, 517
HphI GGTGA 3 cut(s) 317, 665, 968
Hpy166II GTNNAC 5 cut(s) 379, 500, 540, 656, 858
Hpy188I TCNGA 9 cut(s) 117, 172, 337, 343, 546, 780, 809, 916, 1030
Hpy188III TCNNGA 3 cut(s) 180, 387, 678
Hpy8I GTNNAC 5 cut(s) 379, 500, 540, 656, 858
Hpy99I CGWCG 7 cut(s) 176, 364, 367, 403, 482, 488, 715
HpyAV CCTTC 4 cut(s) 54, 86, 267, 437
HpyCH4III ACNGT 2 cut(s) 312, 395
HpyCH4IV ACGT 3 cut(s) 359, 895, 944
HpyCH4V TGCA 4 cut(s) 4, 123, 650, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 471, 480
HpyF3I CTNAG 4 cut(s) 64, 543, 779, 877
HpySE526I ACGT 3 cut(s) 359, 895, 944
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 4 cut(s) 84, 109, 429, 777
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 2 cut(s) 182, 223
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 2 cut(s) 751, 1030
LweI GCATC 4 cut(s) 119, 503, 763, 784
MaeI CTAG 1 cut(s) 963
MaeII ACGT 3 cut(s) 359, 895, 944
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 184, 225
MboI GATC 2 cut(s) 182, 223
MflI RGATCY 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 1 cut(s) 850
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 4 cut(s) 332, 341, 535, 777
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 9 cut(s) 80, 140, 149, 197, 271, 424, 570, 741, 839
Mox20I TGGCCA 1 cut(s) 104
MroI TCCGGA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 521, 561, 1039
MslI CAYNNNNRTG 2 cut(s) 234, 926
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 3 cut(s) 58, 180, 517
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 471, 480
NcoI CCATGG 2 cut(s) 80, 105
NdeII GATC 2 cut(s) 182, 223
NlaIII CATG 4 cut(s) 84, 109, 429, 777
NlaIV GGNNCC 2 cut(s) 184, 319
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 2 cut(s) 429, 777
PaeR7I CTCGAG 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 641
PciI ACATGT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 5 cut(s) 383, 532, 553, 674, 804
PflFI GACNNNGTC 2 cut(s) 71, 482
PkrI GCNGC 2 cut(s) 164, 687
PleI GAGTC 4 cut(s) 332, 340, 535, 777
PpsI GAGTC 4 cut(s) 332, 340, 535, 777
PscI ACATGT 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 184, 319
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 2 cut(s) 71, 482
RseI CAYNNNNRTG 2 cut(s) 234, 926
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 3 cut(s) 521, 561, 1039
SatI GCNGC 2 cut(s) 163, 686
Sau3AI GATC 2 cut(s) 182, 223
SchI GAGTC 4 cut(s) 332, 341, 535, 777
ScrFI CCNGG 1 cut(s) 471
SfaNI GCATC 4 cut(s) 119, 503, 763, 784
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 234, 926
SmlI CTYRAG 2 cut(s) 188, 817
SmoI CTYRAG 2 cut(s) 188, 817
Sse9I AATT 1 cut(s) 850
SsiI CCGC 5 cut(s) 133, 160, 163, 685, 985
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 3 cut(s) 80, 105, 975
TaaI ACNGT 2 cut(s) 312, 395
TaiI ACGT 3 cut(s) 362, 898, 947
TaqI TCGA 5 cut(s) 26, 189, 222, 477, 492
TasI AATT 1 cut(s) 850
TauI GCSGC 2 cut(s) 165, 688
TfiI GAWTC 5 cut(s) 383, 532, 553, 674, 804
Tru1I TTAA 3 cut(s) 521, 561, 1039
Tru9I TTAA 3 cut(s) 521, 561, 1039
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 5 cut(s) 235, 607, 717, 814, 948
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 303
Tth111I GACNNNGTC 2 cut(s) 71, 482
XceI RCATGY 2 cut(s) 429, 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.