RLG00000035373

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001754
Physical Location & Seq
Reverse (-)
66010882 .. 66013032
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035373

Sequence Viewer

Length: 1410 bp
ATGGGAAACAGATTGATGGTGAGCCTCCTGGTTCTTGTGCTTGTGCTTTCCTATGGAGTTATGGCAATGGCTATGAGGTTTAATCATGAAGATGAAGAGTGGGGAAGAGATCAGAGTGAAGAAGAGTGGGAAGGGCACCAAGGGCATCGCCATCTTTTCCTTTTGCAACAATCAAGGCTCCTGGTGAAAACTGAAGCTGGGCAAATGAGGGTGGTGAGAAGTGTAGGTCAGAGAATGGTAGATAGGCATATAAATGTTGGCTATCTCACCTTGGAACCTAACTCCCTCTTCATCCCCCAGTACCTCGACTCCAGCTTGATCCTCTTTGTCCGAAGAGGGCAAGCAAATGTGGGACTGGTACACCGACAGGAATTGGGGGAGAGACAATTGAAGGCTGGGGATGTGTACAGAATTCCAGCAGGTTCCACATTTTACTTGCAGAATGTCAGGGAGAACAGGAGACTTCAGATCATTCTCAGCATCGACACATCTGACAGTTTGAGAATGGGTACTTTGGAGAATTTCTTCATTGGTGGAGGAACCTACCCAAAATCTGTACTTTCTGGGTTCGATTCTGAGATACTCACAAATGCATTTAATGTCTCATCTTCAGAGATAAGGCAGGTTTTGACAAGGCACCAAGAGGGTCCAATTATATATCTAAATAATTCCCAATCATCATCAAACCTTTGGACCAAATTCGTAAGCATGAAAGAACAGGACAGACTACAAGAATTGAAGAAAATGGTGGACTTCCCAGAAGAACCAGAGCAAACCCTAACTTGGTCATGGAGAAAACTGTTGAACTCCGTGTTCGGAACACTTGAAAATGAGGAGAGGAAGCAACATCATCATGAGCACTCCCAGAAATCCTACAACCTCTATAATAGAAAGCCAGATTTCAAGAACAACCATGGATGGACCCTCTCAGTTGATGAGTCTGATTACTCTCCCCTAAAGGACTCTGGCATTGGCGTTTACCTTGTTAGTCTCAACGCAGGGTCAATGTTGGCACCACATGTGAACCCAAGAGCAACAGAATACGGCGTCGTTCTGAGAGGCTCAGGATCACTACAGATTGTGTTTCCAAATGGTACCTTGGCAATGAAGGCGAAACTAAAGCCAGGGAGAGTGTTTTGGGTGCCAAGGTATTTCCCATTTGTCCAAGTGGCATCTAACAACGAGCAACTTGAGATTTTTGGGTTCACTACCTCAGCACAGCCGAACCGGCCACAGTTTTTGGCCGGTTCTAGCTCGGTGCTGCAAGCTCTAAGAGGTCAAGAACTTGCAGCTGCTTTTGGTGTGAGTGAGGGAAGGTTGAATCATTTTGTTAACGCTCAGCGCGAAGCTGTCATTTTGCCGTACAATGCAGAGAGGAATGAAAAGGCAGATGGGATGGCAGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

470

Amino Acids

53.3

Weight (kDa)

7.94

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 206 1.3e-10 Cupin
Cupin_1 PF00190 292 - 437 4e-33 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 410, 613
Acc65I GGTACC 1 cut(s) 1094
AccB1I GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
AccII CGCG 1 cut(s) 1344
AclWI GGATC 2 cut(s) 313, 1075
AcoI YGGCCR 2 cut(s) 1229, 1242
AcsI RAATTY 3 cut(s) 411, 520, 698
AcuI CTGAAG 3 cut(s) 213, 449, 594
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 7 cut(s) 302, 360, 407, 511, 558, 1096, 1364
AfiI CCNNNNNNNGG 1 cut(s) 783
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 6 cut(s) 391, 739, 805, 827, 904, 1321
AjnI CCWGG 3 cut(s) 27, 180, 1123
AluBI AGCT 6 cut(s) 197, 315, 1254, 1268, 1292, 1349
AluI AGCT 6 cut(s) 197, 315, 1254, 1268, 1292, 1349
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 4 cut(s) 376, 454, 607, 995
AlwI GGATC 2 cut(s) 313, 1075
AoxI GGCC 2 cut(s) 1229, 1242
ApeKI GCWGC 3 cut(s) 1261, 1289, 1292
ApoI RAATTY 3 cut(s) 411, 520, 698
Asp700I GAANNNNTTC 1 cut(s) 524
Asp718I GGTACC 1 cut(s) 1094
AspLEI GCGC 1 cut(s) 1344
AspS9I GGNCC 3 cut(s) 647, 693, 921
AsuHPI GGTGA 4 cut(s) 31, 196, 226, 259
AvaII GGWCC 3 cut(s) 647, 693, 921
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
Bbv12I GWGCWC 1 cut(s) 861
BbvCI CCTCAGC 1 cut(s) 1213
BbvI GCAGC 3 cut(s) 1248, 1279, 1301
BccI CCATC 5 cut(s) 10, 159, 912, 1385, 1390
BceAI ACGGC 2 cut(s) 1060, 1345
BciT130I CCWGG 3 cut(s) 29, 182, 1125
BcoDI GTCTC 4 cut(s) 376, 454, 607, 995
BfaI CTAG 1 cut(s) 1251
BfmI CTRYAG 1 cut(s) 1073
BfuAI ACCTGC 2 cut(s) 410, 613
BglI GCCNNNNNGGC 1 cut(s) 1228
BisI GCNGC 3 cut(s) 1262, 1290, 1293
BlpI GCTNAGC 1 cut(s) 1338
BlsI GCNGC 3 cut(s) 1263, 1291, 1294
Bme1390I CCNGG 3 cut(s) 29, 182, 1125
Bme18I GGWCC 3 cut(s) 647, 693, 921
BmgT120I GGNCC 3 cut(s) 647, 693, 921
BmrFI CCNGG 3 cut(s) 29, 182, 1125
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 3 cut(s) 154, 489, 1181
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 295
Bpu10I CCTNAGC 2 cut(s) 1063, 1213
Bpu1102I GCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 1 cut(s) 1211
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse118I RCCGGY 2 cut(s) 1227, 1244
Bse1I ACTGG 2 cut(s) 298, 360
Bse3DI GCAATG 2 cut(s) 72, 1110
BseBI CCWGG 3 cut(s) 29, 182, 1125
BseDI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BseGI GGATG 4 cut(s) 291, 406, 923, 1401
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMI GCAATG 2 cut(s) 72, 1110
BseMII CTCAG 7 cut(s) 490, 567, 942, 1046, 1077, 1227, 1352
BseNI ACTGG 2 cut(s) 298, 360
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 3 cut(s) 1248, 1279, 1301
BseYI CCCAGC 2 cut(s) 197, 395
Bsh1236I CGCG 1 cut(s) 1344
BshFI GGCC 2 cut(s) 1231, 1244
BshNI GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 2 cut(s) 1228, 1245
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 4 cut(s) 376, 454, 607, 995
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 1231, 1244
Bsp1286I GDGCHC 2 cut(s) 138, 861
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 5 cut(s) 109, 318, 468, 1067, 1402
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 1 cut(s) 913
BspANI GGCC 2 cut(s) 1231, 1244
BspCNI CTCAG 7 cut(s) 489, 568, 941, 1047, 1076, 1226, 1351
BspFNI CGCG 1 cut(s) 1344
BspHI TCATGA 2 cut(s) 85, 853
BspMI ACCTGC 2 cut(s) 410, 613
BspPI GGATC 2 cut(s) 313, 1075
BspT107I GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
BsrDI GCAATG 2 cut(s) 72, 1110
BsrFI RCCGGY 2 cut(s) 1227, 1244
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 2 cut(s) 298, 360
BssAI RCCGGY 2 cut(s) 1227, 1244
BssECI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BssMI GATC 5 cut(s) 109, 318, 468, 1067, 1402
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 5 cut(s) 139, 270, 913, 1098, 1145
Bst2UI CCWGG 3 cut(s) 29, 182, 1125
Bst4CI ACNGT 3 cut(s) 497, 801, 1236
Bst6I CTCTTC 5 cut(s) 90, 100, 117, 293, 328
BstACI GRCGYC 1 cut(s) 1047
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 342, 1266
BstDEI CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 4 cut(s) 291, 406, 923, 1401
BstFNI CGCG 1 cut(s) 1344
BstHHI GCGC 1 cut(s) 1344
BstKTI GATC 5 cut(s) 112, 321, 471, 1070, 1405
BstMAI GTCTC 4 cut(s) 376, 454, 607, 995
BstMBI GATC 5 cut(s) 109, 318, 468, 1067, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 142, 1109, 1228
BstNI CCWGG 3 cut(s) 29, 182, 1125
BstNSI RCATGY 1 cut(s) 1022
BstSCI CCNGG 3 cut(s) 27, 180, 1123
BstSFI CTRYAG 1 cut(s) 1073
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 1344
BstV1I GCAGC 3 cut(s) 1248, 1279, 1301
BsuRI GGCC 2 cut(s) 1231, 1244
BtgI CCRYGG 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 4 cut(s) 291, 406, 923, 1401
BveI ACCTGC 2 cut(s) 410, 613
Cac8I GCNNGC 2 cut(s) 342, 1266
CciI TCATGA 2 cut(s) 85, 853
CfoI GCGC 1 cut(s) 1344
Cfr10I RCCGGY 2 cut(s) 1227, 1244
Cfr13I GGNCC 3 cut(s) 647, 693, 921
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 7 cut(s) 301, 359, 406, 510, 557, 1095, 1363
CspCI CAANNNNNGTGG 2 cut(s) 1221, 1256
CviAII CATG 6 cut(s) 86, 709, 789, 854, 914, 1019
CviQI GTAC 7 cut(s) 301, 359, 406, 510, 557, 1095, 1363
DdeI CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
DpnI GATC 5 cut(s) 111, 320, 470, 1069, 1404
DpnII GATC 5 cut(s) 109, 318, 468, 1067, 1402
EaeI YGGCCR 2 cut(s) 1229, 1242
Eam1104I CTCTTC 5 cut(s) 90, 100, 117, 293, 328
EarI CTCTTC 5 cut(s) 90, 100, 117, 293, 328
Eco130I CCWWGG 5 cut(s) 139, 270, 913, 1098, 1145
Eco47I GGWCC 3 cut(s) 647, 693, 921
Eco57I CTGAAG 3 cut(s) 213, 449, 594
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 27, 180, 1123
EcoT14I CCWWGG 5 cut(s) 139, 270, 913, 1098, 1145
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 5 cut(s) 139, 270, 913, 1098, 1145
FaeI CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
FaqI GGGAC 1 cut(s) 366
FatI CATG 6 cut(s) 85, 708, 788, 853, 913, 1018
Fnu4HI GCNGC 3 cut(s) 1262, 1290, 1293
FokI GGATG 3 cut(s) 278, 413, 930
Fsp4HI GCNGC 3 cut(s) 1262, 1290, 1293
FspBI CTAG 1 cut(s) 1251
GlaI GCGC 1 cut(s) 1343
GluI GCNGC 3 cut(s) 1262, 1290, 1293
GsaI CCCAGC 2 cut(s) 201, 399
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 2 cut(s) 1231, 1244
HapII CCGG 2 cut(s) 1228, 1245
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 1 cut(s) 1344
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HinfI GANTC 5 cut(s) 308, 572, 938, 962, 1321
HpaI GTTAAC 1 cut(s) 1333
HpaII CCGG 2 cut(s) 1228, 1245
HphI GGTGA 4 cut(s) 31, 196, 226, 259
Hpy166II GTNNAC 7 cut(s) 361, 406, 751, 979, 1024, 1206, 1333
Hpy188III TCNNGA 5 cut(s) 86, 854, 904, 1065, 1280
Hpy8I GTNNAC 7 cut(s) 361, 406, 751, 979, 1024, 1206, 1333
Hpy99I CGWCG 1 cut(s) 1052
HpyAV CCTTC 4 cut(s) 125, 385, 1102, 1308
HpyCH4III ACNGT 3 cut(s) 497, 801, 1236
HpyCH4V TGCA 6 cut(s) 166, 439, 593, 1264, 1289, 1370
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 1109, 1228
HpyF3I CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
HspAI GCGC 1 cut(s) 1342
KpnI GGTACC 1 cut(s) 1098
KspAI GTTAAC 1 cut(s) 1333
Kzo9I GATC 5 cut(s) 109, 318, 468, 1067, 1402
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 3 cut(s) 1248, 1279, 1301
LweI GCATC 3 cut(s) 154, 489, 1181
MaeI CTAG 1 cut(s) 1251
MalI GATC 5 cut(s) 111, 320, 470, 1069, 1404
MboI GATC 5 cut(s) 109, 318, 468, 1067, 1402
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 138, 861
MluCI AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
MlyI GAGTC 3 cut(s) 302, 947, 956
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 3 cut(s) 81, 597, 1332
MslI CAYNNNNRTG 3 cut(s) 90, 252, 852
MspA1I CMGCKG 1 cut(s) 1292
MspI CCGG 2 cut(s) 1228, 1245
MspR9I CCNGG 3 cut(s) 29, 182, 1125
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 3 cut(s) 29, 182, 1125
MvnI CGCG 1 cut(s) 1344
MwoI GCNNNNNNNGC 3 cut(s) 142, 1109, 1228
NcoI CCATGG 1 cut(s) 913
NdeII GATC 5 cut(s) 109, 318, 468, 1067, 1402
NlaIII CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 1022
PagI TCATGA 2 cut(s) 85, 853
PciI ACATGT 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 1 cut(s) 1341
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 2 cut(s) 572, 1321
PkrI GCNGC 3 cut(s) 1263, 1291, 1294
PleI GAGTC 3 cut(s) 302, 946, 956
PpsI GAGTC 3 cut(s) 302, 946, 956
PscI ACATGT 1 cut(s) 1018
Psp6I CCWGG 3 cut(s) 27, 180, 1123
PspFI CCCAGC 2 cut(s) 197, 395
PspGI CCWGG 3 cut(s) 27, 180, 1123
PspPI GGNCC 3 cut(s) 647, 693, 921
PvuII CAGCTG 1 cut(s) 1292
RsaI GTAC 7 cut(s) 302, 360, 407, 511, 558, 1096, 1364
RsaNI GTAC 7 cut(s) 301, 359, 406, 510, 557, 1095, 1363
RseI CAYNNNNRTG 3 cut(s) 90, 252, 852
SaqAI TTAA 3 cut(s) 81, 597, 1332
SatI GCNGC 3 cut(s) 1262, 1290, 1293
Sau3AI GATC 5 cut(s) 109, 318, 468, 1067, 1402
Sau96I GGNCC 3 cut(s) 647, 693, 921
SchI GAGTC 3 cut(s) 302, 947, 956
ScrFI CCNGG 3 cut(s) 29, 182, 1125
SduI GDGCHC 2 cut(s) 138, 861
SfaNI GCATC 3 cut(s) 154, 489, 1181
SfcI CTRYAG 1 cut(s) 1073
SinI GGWCC 3 cut(s) 647, 693, 921
SmiMI CAYNNNNRTG 3 cut(s) 90, 252, 852
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
SspMI CTAG 1 cut(s) 1251
StyD4I CCNGG 3 cut(s) 27, 180, 1123
StyI CCWWGG 5 cut(s) 139, 270, 913, 1098, 1145
TaaI ACNGT 3 cut(s) 497, 801, 1236
TaqI TCGA 3 cut(s) 306, 483, 570
TasI AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
TatI WGTACW 2 cut(s) 405, 556
TfiI GAWTC 2 cut(s) 572, 1321
Tru1I TTAA 3 cut(s) 81, 597, 1332
Tru9I TTAA 3 cut(s) 81, 597, 1332
TseI GCWGC 3 cut(s) 1261, 1289, 1292
TspDTI ATGAA 7 cut(s) 102, 108, 280, 517, 725, 1121, 1395
TspGWI ACGGA 1 cut(s) 799
VpaK11BI GGWCC 3 cut(s) 647, 693, 921
XapI RAATTY 3 cut(s) 411, 520, 698
XceI RCATGY 1 cut(s) 1022
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 1 cut(s) 1251
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.