Rroxscaffold_1G00020290

Vicilin-like antimicrobial peptides

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
24637441 .. 24640098
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020290.1

Sequence Viewer

Length: 1560 bp
ATGGGAGACGAGGATTGGTTCTTGTTGCAGAACTCAAAGCAGGTGGTGAAAACTCGAGCTGGTGAAATGAGGGTGGTGAAAAGCGTAGGTGGGAGGATTGTTGATAAGCCAATGCATATTGGGTTTATTACAATGGAGCCCAAGTCCCTCTTTGTACCTCAGTACATGGACTCCAGCTTGATCCTCTTCGTCCATTCTGGGGAAGCAAAGGTAGGGCTGATATACAGAGATGAACTGGGAGAGAGGAGATTGAGGGCTGGGGATGTGTACAGAATTCCAGCTGGTTCGCCGTTTTATTTGGTGAATACAGGGGAGGGTCAGAGACTTCACATCATCTGTAGCGTTGATACATCTGAGAGTTTGGGAATGGGTACTTTGCAGTCTTTCTACATTGGTGGAGGATATAACCCAGCATCTGTACTTGCTGGATTTGACCAGGAAATACTCGAAAGTGCATTCAATGTTACATCATCAGAACTGAGTGAATTCTTGTCAAGGCAACAAGATGGTCCGATTGTATATGTGACTGATTCACCTCATCCACCAAGCCTTTGGTCAAGATTCCTAGAGCTGAAAGAGCATGACAGACTCCAAAATATGAAGAGAATGGTGGGCTTCACAAAAGAACCTGATCACCAAGAAGAAGACCATTCATTAGCATGGTCATGGAGGAAGCTTCTCAACTCTGTGTTCGGATCAAATGACAAGAGAAGAGACGATCCCGATGCTTACAAGGGAAAAGGAAAATCACATGATGCTTACAACCTCTTCAAGAGATCTGCAGATTTCAAAAACGACTATGGCTGGAGCAAGGCACTTGACGAATCTGATTACTCGCCACTAAAAGACTCTGGCGTTGGTGTCTTCCTTGTCAACCTTTCTGCAGGGTCAATGATGGCACCACACGTGAACCCAATTGCAACAGAATATGGGATTGTATTGAGTGGCTCTGGCACAATACAGATTGTATTTCCAAACGGAACCTCGGCAATGAATACTAAAGTTCAAGAAGGAGATGTGTTTTGGGTCCCAAGGTACTTCCCATTCTGTCAAATTGCATCAAGAACTGGTCCTCTTGAGTTCTTTGGATTCACCACCTCGGCACGCAAGAACAGGCCACAGTTCTTGGTTGGTGCTAGCTCTGTTCTTAGGGAGCTCAGAGGACCTGAGCTTGCAGCTGCTTTTGGTGTGAATGAGGATCGGTTGAGTCGCATTGTTCATGCTCAGCGTGAGTCTGTGATCTTGCCTTCGGTACAAGCAGCTCCTCCTTACAAGGGGGAGGAGAGAGAGCCAACCCCGGAGGAGGAGACAGGGAAGCAAACCCCATACAAGGAGGACGAGAGGAGGCAGGAAGACAGGAGGAGGCGGGAAGACGAGAGGGAGCAATCAGCTGAGGAAGATGAGAGAAGGCAACCCCCATACAAGGAAGATGAGAGGCAGCAGTCGTCACAGGAGAAGCAGAGGAGGCAACCTCCATACGGGGAAGGGGATGTGATGTTTCAGAGGCTCCCAAGGGTGATCAAGAGCTTCGGGAATGAGATGGTTATGGGTTTTGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

58.82

Weight (kDa)

5.67

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 41 - 159 3.4e-09 Cupin
Cupin_1 PF00190 254 - 399 1.2e-32 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 898
AciI CCGC 1 cut(s) 1366
AclWI GGATC 4 cut(s) 175, 703, 713, 1206
AcsI RAATTY 2 cut(s) 273, 485
AcvI CACGTG 1 cut(s) 907
AfaI GTAC 7 cut(s) 156, 164, 269, 373, 420, 1037, 1254
AfiI CCNNNNNNNGG 6 cut(s) 199, 1274, 1303, 1330, 1423, 1478
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 4 cut(s) 460, 772, 790, 1007
AjnI CCWGG 1 cut(s) 435
Alw21I GWGCWC 1 cut(s) 1158
Alw26I GTCTC 3 cut(s) 316, 708, 1301
AlwI GGATC 4 cut(s) 175, 703, 713, 1206
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 54
AoxI GGCC 1 cut(s) 1115
ApeKI GCWGC 4 cut(s) 1175, 1178, 1259, 1438
ApoI RAATTY 2 cut(s) 273, 485
AspS9I GGNCC 4 cut(s) 509, 1027, 1070, 1163
AsuC2I CCSGG 1 cut(s) 1298
AsuHPI GGTGA 8 cut(s) 58, 74, 88, 313, 525, 626, 1084, 1528
AsuNHI GCTAGC 1 cut(s) 1136
AvaI CYCGRG 1 cut(s) 54
AvaII GGWCC 4 cut(s) 509, 1027, 1070, 1163
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 2 cut(s) 141, 1158
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 4 cut(s) 651, 856, 1359, 1377
Bbv12I GWGCWC 1 cut(s) 1158
BbvCI CCTCAGC 1 cut(s) 1392
BbvI GCAGC 4 cut(s) 1165, 1187, 1271, 1450
BccI CCATC 3 cut(s) 500, 889, 1534
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 1 cut(s) 437
BclI TGATCA 2 cut(s) 631, 1518
BcnI CCSGG 1 cut(s) 1298
BcoDI GTCTC 3 cut(s) 316, 708, 1301
BfaI CTAG 2 cut(s) 566, 1137
BfmI CTRYAG 3 cut(s) 337, 780, 882
BfuAI ACCTGC 1 cut(s) 31
BglII AGATCT 1 cut(s) 776
BisI GCNGC 4 cut(s) 1176, 1179, 1260, 1439
BlpI GCTNAGC 1 cut(s) 1224
BlsI GCNGC 4 cut(s) 1177, 1180, 1261, 1440
Bme1390I CCNGG 2 cut(s) 437, 1298
Bme18I GGWCC 4 cut(s) 509, 1027, 1070, 1163
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 4 cut(s) 509, 1027, 1070, 1163
BmiI GGNNCC 6 cut(s) 138, 900, 982, 1028, 1029, 1508
BmrFI CCNGG 2 cut(s) 437, 1298
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 4 cut(s) 422, 715, 745, 1067
BmtI GCTAGC 1 cut(s) 1140
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 4 cut(s) 651, 856, 1359, 1377
BplI GAGNNNNNCTC 2 cut(s) 1456, 1488
BpmI CTGGAG 2 cut(s) 157, 826
Bpu10I CCTNAGC 2 cut(s) 1167, 1392
Bpu1102I GCTNAGC 1 cut(s) 1224
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 1298
BsaAI YACGTR 1 cut(s) 907
BsaJI CCNNGG 5 cut(s) 984, 1031, 1098, 1296, 1511
BsaXI ACNNNNNCTCC 4 cut(s) 128, 155, 158, 185
Bsc4I CCNNNNNNNGG 6 cut(s) 199, 1274, 1303, 1330, 1423, 1478
Bse1I ACTGG 2 cut(s) 240, 1072
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 5 cut(s) 984, 1031, 1098, 1296, 1511
BseGI GGATG 3 cut(s) 268, 538, 1495
BseLI CCNNNNNNNGG 6 cut(s) 199, 1274, 1303, 1330, 1423, 1478
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 7 cut(s) 173, 345, 470, 1158, 1171, 1238, 1383
BseNI ACTGG 2 cut(s) 240, 1072
BseRI GAGGAG 8 cut(s) 259, 1254, 1295, 1316, 1319, 1357, 1375, 1477
BseXI GCAGC 4 cut(s) 1165, 1187, 1271, 1450
BseYI CCCAGC 2 cut(s) 257, 409
BshFI GGCC 1 cut(s) 1117
BshNI GGYRCC 1 cut(s) 898
BsiHKAI GWGCWC 1 cut(s) 1158
BsiHKCI CYCGRG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 1298
BslFI GGGAC 2 cut(s) 130, 1013
BslI CCNNNNNNNGG 6 cut(s) 199, 1274, 1303, 1330, 1423, 1478
BsmAI GTCTC 3 cut(s) 316, 708, 1301
BsmBI CGTCTC 1 cut(s) 708
BsmFI GGGAC 2 cut(s) 130, 1013
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 1117
BsoBI CYCGRG 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 141, 1158
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
Bsp1720I GCTNAGC 1 cut(s) 1224
BspACI CCGC 1 cut(s) 1366
BspANI GGCC 1 cut(s) 1117
BspCNI CTCAG 7 cut(s) 172, 346, 471, 1159, 1170, 1237, 1384
BspLI GGNNCC 6 cut(s) 138, 900, 982, 1028, 1029, 1508
BspMAI CTGCAG 2 cut(s) 784, 886
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 1140
BspPI GGATC 4 cut(s) 175, 703, 713, 1206
BspT107I GGYRCC 1 cut(s) 898
BsrDI GCAATG 1 cut(s) 996
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 2 cut(s) 240, 1072
BssECI CCNNGG 5 cut(s) 984, 1031, 1098, 1296, 1511
BssMI GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
BssT1I CCWWGG 2 cut(s) 1031, 1511
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 1122
Bst6I CTCTTC 4 cut(s) 191, 596, 706, 773
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 3 cut(s) 1105, 1138, 1173
BstDEI CTNAG 8 cut(s) 159, 354, 479, 1148, 1157, 1167, 1224, 1392
BstF5I GGATG 3 cut(s) 268, 538, 1495
BstKTI GATC 8 cut(s) 183, 634, 698, 721, 779, 1201, 1242, 1521
BstMAI GTCTC 3 cut(s) 316, 708, 1301
BstMBI GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
BstMWI GCNNNNNNNGC 2 cut(s) 577, 1465
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 435, 1296
BstSFI CTRYAG 3 cut(s) 337, 780, 882
BstV1I GCAGC 4 cut(s) 1165, 1187, 1271, 1450
BstV2I GAAGAC 4 cut(s) 651, 856, 1359, 1377
BstX2I RGATCY 1 cut(s) 776
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 776
BsuRI GGCC 1 cut(s) 1117
BtsCI GGATG 3 cut(s) 268, 538, 1495
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 1105, 1138, 1173
CaiI CAGNNNCTG 1 cut(s) 416
Cfr13I GGNCC 4 cut(s) 509, 1027, 1070, 1163
Csp6I GTAC 7 cut(s) 155, 163, 268, 372, 419, 1036, 1253
CspCI CAANNNNNGTGG 4 cut(s) 24, 59, 1107, 1142
CviAII CATG 6 cut(s) 166, 581, 660, 666, 752, 1220
CviQI GTAC 7 cut(s) 155, 163, 268, 372, 419, 1036, 1253
DdeI CTNAG 8 cut(s) 159, 354, 479, 1148, 1157, 1167, 1224, 1392
DpnI GATC 8 cut(s) 182, 633, 697, 720, 778, 1200, 1241, 1520
DpnII GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
Eam1104I CTCTTC 4 cut(s) 191, 596, 706, 773
EarI CTCTTC 4 cut(s) 191, 596, 706, 773
Ecl136II GAGCTC 1 cut(s) 1156
Eco130I CCWWGG 2 cut(s) 1031, 1511
Eco24I GRGCYC 2 cut(s) 141, 1158
Eco47I GGWCC 4 cut(s) 509, 1027, 1070, 1163
Eco53kI GAGCTC 1 cut(s) 1156
Eco72I CACGTG 1 cut(s) 907
Eco88I CYCGRG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 1156
EcoO109I RGGNCCY 2 cut(s) 1027, 1163
EcoRI GAATTC 2 cut(s) 273, 485
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 1031, 1511
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 141, 1158
ErhI CCWWGG 2 cut(s) 1031, 1511
Esp3I CGTCTC 1 cut(s) 708
FaeI CATG 6 cut(s) 169, 584, 663, 669, 755, 1223
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 130, 1013
FatI CATG 6 cut(s) 165, 580, 659, 665, 751, 1219
FauI CCCGC 1 cut(s) 1359
FbaI TGATCA 2 cut(s) 631, 1518
Fnu4HI GCNGC 4 cut(s) 1176, 1179, 1260, 1439
FokI GGATG 3 cut(s) 275, 525, 1502
FriOI GRGCYC 2 cut(s) 141, 1158
Fsp4HI GCNGC 4 cut(s) 1176, 1179, 1260, 1439
FspBI CTAG 2 cut(s) 566, 1137
GluI GCNGC 4 cut(s) 1176, 1179, 1260, 1439
GsaI CCCAGC 2 cut(s) 261, 413
GsuI CTGGAG 2 cut(s) 157, 826
HaeIII GGCC 1 cut(s) 1117
HapII CCGG 1 cut(s) 1298
Hin1II CATG 6 cut(s) 169, 584, 663, 669, 755, 1223
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 9 cut(s) 170, 530, 561, 588, 824, 848, 1089, 1207, 1232
HpaII CCGG 1 cut(s) 1298
HphI GGTGA 8 cut(s) 58, 74, 88, 313, 525, 626, 1084, 1528
Hpy166II GTNNAC 3 cut(s) 268, 874, 910
Hpy188I TCNGA 8 cut(s) 321, 355, 475, 513, 695, 829, 1160, 1503
Hpy188III TCNNGA 8 cut(s) 558, 722, 772, 1007, 1062, 1076, 1522, 1531
Hpy8I GTNNAC 3 cut(s) 268, 874, 910
HpyAV CCTTC 4 cut(s) 1004, 1257, 1401, 1478
HpyCH4III ACNGT 1 cut(s) 1122
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 9 cut(s) 28, 115, 379, 455, 782, 884, 920, 1058, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 577, 1465
HpyF3I CTNAG 8 cut(s) 159, 354, 479, 1148, 1157, 1167, 1224, 1392
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 6 cut(s) 169, 584, 663, 669, 755, 1223
KflI GGGWCCC 1 cut(s) 1027
Ksp22I TGATCA 2 cut(s) 631, 1518
Kzo9I GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
LmnI GCTCC 6 cut(s) 136, 807, 1153, 1267, 1381, 1512
Lsp1109I GCAGC 4 cut(s) 1165, 1187, 1271, 1450
LweI GCATC 4 cut(s) 422, 715, 745, 1067
MaeI CTAG 2 cut(s) 566, 1137
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 3 cut(s) 463, 523, 1446
MalI GATC 8 cut(s) 182, 633, 697, 720, 778, 1200, 1241, 1520
MboI GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 1 cut(s) 776
MhlI GDGCHC 2 cut(s) 141, 1158
MluCI AATT 4 cut(s) 273, 485, 915, 1053
MlyI GAGTC 5 cut(s) 164, 582, 842, 1216, 1241
Mph1103I ATGCAT 1 cut(s) 117
MslI CAYNNNNRTG 2 cut(s) 658, 664
MspA1I CMGCKG 3 cut(s) 281, 1178, 1391
MspI CCGG 1 cut(s) 1298
MspR9I CCNGG 2 cut(s) 437, 1298
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 577, 1465
NciI CCSGG 1 cut(s) 1298
NdeII GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
NheI GCTAGC 1 cut(s) 1136
NlaIII CATG 6 cut(s) 169, 584, 663, 669, 755, 1223
NlaIV GGNNCC 6 cut(s) 138, 900, 982, 1028, 1029, 1508
NmeAIII GCCGAG 2 cut(s) 965, 1079
NmuCI GTSAC 2 cut(s) 523, 1446
NsiI ATGCAT 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 31
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 4 cut(s) 530, 561, 824, 1089
PkrI GCNGC 4 cut(s) 1177, 1180, 1261, 1440
PleI GAGTC 5 cut(s) 164, 582, 842, 1215, 1240
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 5 cut(s) 164, 582, 842, 1215, 1240
Ppu21I YACGTR 1 cut(s) 907
PpuMI RGGWCCY 2 cut(s) 1027, 1163
Psp124BI GAGCTC 1 cut(s) 1158
Psp5II RGGWCCY 2 cut(s) 1027, 1163
Psp6I CCWGG 1 cut(s) 435
PspCI CACGTG 1 cut(s) 907
PspFI CCCAGC 2 cut(s) 257, 409
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 6 cut(s) 138, 900, 982, 1028, 1029, 1508
PspPI GGNCC 4 cut(s) 509, 1027, 1070, 1163
PspPPI RGGWCCY 2 cut(s) 1027, 1163
PspXI VCTCGAGB 1 cut(s) 54
PstI CTGCAG 2 cut(s) 784, 886
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 776
PvuII CAGCTG 3 cut(s) 281, 1178, 1391
RsaI GTAC 7 cut(s) 156, 164, 269, 373, 420, 1037, 1254
RsaNI GTAC 7 cut(s) 155, 163, 268, 372, 419, 1036, 1253
RseI CAYNNNNRTG 2 cut(s) 658, 664
SacI GAGCTC 1 cut(s) 1158
SatI GCNGC 4 cut(s) 1176, 1179, 1260, 1439
Sau3AI GATC 8 cut(s) 180, 631, 695, 718, 776, 1198, 1239, 1518
Sau96I GGNCC 4 cut(s) 509, 1027, 1070, 1163
SchI GAGTC 5 cut(s) 164, 582, 842, 1216, 1241
ScrFI CCNGG 2 cut(s) 437, 1298
SduI GDGCHC 2 cut(s) 141, 1158
SfaNI GCATC 4 cut(s) 422, 715, 745, 1067
SfcI CTRYAG 3 cut(s) 337, 780, 882
Sfr274I CTCGAG 1 cut(s) 54
SinI GGWCC 4 cut(s) 509, 1027, 1070, 1163
SlaI CTCGAG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 658, 664
SmlI CTYRAG 2 cut(s) 54, 1076
SmoI CTYRAG 2 cut(s) 54, 1076
Sse9I AATT 4 cut(s) 273, 485, 915, 1053
SsiI CCGC 1 cut(s) 1366
SspMI CTAG 2 cut(s) 566, 1137
SstI GAGCTC 1 cut(s) 1158
StyD4I CCNGG 2 cut(s) 435, 1296
StyI CCWWGG 2 cut(s) 1031, 1511
TaaI ACNGT 1 cut(s) 1122
TaiI ACGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 55, 447
TasI AATT 4 cut(s) 273, 485, 915, 1053
TatI WGTACW 3 cut(s) 162, 267, 418
TfiI GAWTC 4 cut(s) 530, 561, 824, 1089
TseFI GTSAC 2 cut(s) 523, 1446
TseI GCWGC 4 cut(s) 1175, 1178, 1259, 1438
Tsp45I GTSAC 2 cut(s) 523, 1446
TspDTI ATGAA 5 cut(s) 246, 614, 642, 1007, 1208
TspGWI ACGGA 1 cut(s) 993
VpaK11BI GGWCC 4 cut(s) 509, 1027, 1070, 1163
XapI RAATTY 2 cut(s) 273, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 54
XspI CTAG 2 cut(s) 566, 1137
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.