Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001754

Physical Location & Seq

Genomic Coordinates Forward (+)

9188551 .. 9189201

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAGCTCGATGATTCTGATTACTCACCGTTGAAACACTCTGGCATCGGCGTTTACCTTGTCAACCTTACCGCTGGGTCAATGATGGCACCGCATGTGAATCCGAGAGCGACAGAATACGGCATTGTGTTGAGAGGCTCCGGAACACTACAGATTGTGTTCCCAAATGGGACACAAGCCATGAATGCTAACATAGAAGAAGGTGATGTATTTTGGGTGCCAAGGTACTTCCCATTCTGTCAAATCGCATCGAGAACCGGCCCGCTCGAGTTGTTTGGATTCACAACCTCGGCGCGGAAGAATAGGCCTCAGATTTTGGTTGGTGCGGCGTCTGTTCTTCAGGAGCTCAAAGGACCCGAGCTTGCAGCTGCTTTCGGCGTGACTGAAGACCGGTTGAGGAGGTTTGTTGATGCTCAGCGCGAGGCAGTGATCTTGCCTACGGCACAAGCAGCACCGCCGTACAAGGAGGAGAGGAAGCCGCCGAAGGAGGAGGAGGAAGAGAGGAGGCAGCAGCATCCGGAAGAGGGCGAGAGAAGGGGGGATGCGGGAAGGGGCGAGGAGAGAAGGGAGGATGACAGAAAGGATAAGGGAAGGTTTGAGAGGTTCGACAGGGTCCAAGAGGCGATCAAGAGTGTCACGGGTTTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

217

Amino Acids

24.28

Weight (kDa)

5.6

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	7 - 129	2.1e-29	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28490
fragaria_vesca	FvH4_3g33180 FvH4_3g33190 FvH4_3g33240
malus_domestica	MD03G1105100.v1.1 MD11G1130400.v1.1
prunus_persica	Prupe.6G095000_v2.0.a1
pyrus_communis	pycom11g10790 pycom11g10800
rosa_chinensis	RchiOBHm_Chr5g0060491 RchiOBHm_Chr5g0060501 RchiOBHm_Chr5g0060531 RchiOBHm_Chr5g0060591
rosa_laevigata	RLG00000035368 RLG00000035369 RLG00000035372 RLG00000035373
rosa_multiflora	Rmu_co8403353.1_g000001 Rmu_sc0001650.1_g000002 Rmu_sc0001650.1_g000006 Rmu_sc0001650.1_g000014 Rmu_sc0001650.1_g000017 Rmu_sc0007864.1_g000004 Rmu_sc0007864.1_g000006 Rmu_sc0034083.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020220 Rroxscaffold_1G00020240 Rroxscaffold_1G00020280 Rroxscaffold_1G00020290
rosa_rugosa	Rorug05G0330900 Rorug05G0330900 Rorug05G0331000
rosa_samantha	Rh5AG395200 Rh5AG395300 Rh5AG395400 Rh5BG407600 Rh5BG407700 Rh5CG431300 Rh5CG431400 Rh5CG431700 Rh5CG432100 Rh5DG422400 Rh5DG422500 Rh5DG422600
rosa_wichuraiana	Rw5G037170 Rw5G037180 Rw5G037190 Rw5G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	88, 217
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	2 cut(s)	295, 420
AccIII	TCCGGA	2 cut(s)	140, 517
AciI	CCGC	8 cut(s)	72, 92, 263, 295, 326, 455, 479, 545
AcuI	CTGAAG	2 cut(s)	323, 405
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	2 cut(s)	227, 461
AfiI	CCNNNNNNNGG	2 cut(s)	294, 524
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	4 cut(s)	7, 346, 361, 368
AluI	AGCT	4 cut(s)	7, 346, 361, 368
Alw21I	GWGCWC	1 cut(s)	348
Ama87I	CYCGRG	2 cut(s)	266, 356
Aor13HI	TCCGGA	2 cut(s)	140, 517
AoxI	GGCC	2 cut(s)	259, 305
ApeKI	GCWGC	6 cut(s)	4, 365, 368, 449, 508, 511
AsiGI	ACCGGT	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	295, 420
AspS9I	GGNCC	3 cut(s)	260, 353, 613
AsuHPI	GGTGA	2 cut(s)	18, 215
AvaI	CYCGRG	2 cut(s)	266, 356
AvaII	GGWCC	2 cut(s)	353, 613
BanI	GGYRCC	2 cut(s)	88, 217
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	6 cut(s)	16, 355, 377, 461, 520, 523
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	3 cut(s)	136, 442, 456
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	8 cut(s)	5, 327, 366, 369, 450, 479, 509, 512
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	8 cut(s)	6, 328, 367, 370, 451, 480, 510, 513
Bme18I	GGWCC	2 cut(s)	353, 613
BmeT110I	CYCGRG	2 cut(s)	266, 356
BmgT120I	GGNCC	3 cut(s)	260, 353, 613
BmiI	GGNNCC	5 cut(s)	90, 139, 219, 355, 614
BmsI	GCATC	5 cut(s)	54, 257, 400, 523, 532
BpiI	GAAGAC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	221, 288
BsaWI	WCCGGW	3 cut(s)	140, 390, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 524
Bse118I	RCCGGY	2 cut(s)	257, 390
BseAI	TCCGGA	2 cut(s)	140, 517
BseDI	CCNNGG	2 cut(s)	221, 288
BseGI	GGATG	3 cut(s)	514, 547, 577
BseLI	CCNNNNNNNGG	2 cut(s)	294, 524
BseMII	CTCAG	2 cut(s)	323, 428
BseRI	GAGGAG	6 cut(s)	412, 482, 503, 506, 517, 572
BseXI	GCAGC	6 cut(s)	16, 355, 377, 461, 520, 523
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	295, 420
BshFI	GGCC	2 cut(s)	261, 307
BshNI	GGYRCC	2 cut(s)	88, 217
BshTI	ACCGGT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	2 cut(s)	266, 356
BsiSI	CCGG	4 cut(s)	141, 258, 391, 518
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	294, 524
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	261, 307
BsoBI	CYCGRG	2 cut(s)	266, 356
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	2 cut(s)	140, 517
Bsp143I	GATC	2 cut(s)	429, 624
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	8 cut(s)	72, 92, 263, 295, 326, 455, 479, 545
BspANI	GGCC	2 cut(s)	261, 307
BspCNI	CTCAG	2 cut(s)	322, 427
BspEI	TCCGGA	2 cut(s)	140, 517
BspFNI	CGCG	2 cut(s)	295, 420
BspLI	GGNNCC	5 cut(s)	90, 139, 219, 355, 614
BspT107I	GGYRCC	2 cut(s)	88, 217
BsrBI	CCGCTC	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	257, 390
BssAI	RCCGGY	2 cut(s)	257, 390
BssECI	CCNNGG	2 cut(s)	221, 288
BssMI	GATC	2 cut(s)	429, 624
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	2 cut(s)	492, 516
BstACI	GRCGYC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	263, 363
BstDEI	CTNAG	2 cut(s)	309, 414
BstF5I	GGATG	3 cut(s)	514, 547, 577
BstFNI	CGCG	2 cut(s)	295, 420
BstHHI	GCGC	2 cut(s)	295, 420
BstKTI	GATC	2 cut(s)	432, 627
BstMBI	GATC	2 cut(s)	429, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 449
BstNSI	RCATGY	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	295, 420
BstV1I	GCAGC	6 cut(s)	16, 355, 377, 461, 520, 523
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	261, 307
BtsCI	GGATG	3 cut(s)	514, 547, 577
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	263, 363
CfoI	GCGC	2 cut(s)	295, 420
Cfr10I	RCCGGY	2 cut(s)	257, 390
Cfr13I	GGNCC	3 cut(s)	260, 353, 613
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	226, 460
CspAI	ACCGGT	1 cut(s)	390
CviAII	CATG	2 cut(s)	95, 181
CviJI	RGCY	9 cut(s)	7, 138, 179, 261, 307, 346, 361, 368, 478
CviKI_1	RGCY	9 cut(s)	7, 138, 179, 261, 307, 346, 361, 368, 478
CviQI	GTAC	2 cut(s)	226, 460
DdeI	CTNAG	2 cut(s)	309, 414
DpnI	GATC	2 cut(s)	431, 626
DpnII	GATC	2 cut(s)	429, 624
Eam1104I	CTCTTC	2 cut(s)	492, 516
EarI	CTCTTC	2 cut(s)	492, 516
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	353, 613
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	323, 405
Eco88I	CYCGRG	2 cut(s)	266, 356
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	98, 184
FaiI	YATR	3 cut(s)	96, 182, 194
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	94, 180
FauI	CCCGC	2 cut(s)	270, 538
Fnu4HI	GCNGC	8 cut(s)	5, 327, 366, 369, 450, 479, 509, 512
FokI	GGATG	3 cut(s)	501, 554, 584
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	8 cut(s)	5, 327, 366, 369, 450, 479, 509, 512
GlaI	GCGC	2 cut(s)	294, 419
GluI	GCNGC	8 cut(s)	5, 327, 366, 369, 450, 479, 509, 512
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	261, 307
HapII	CCGG	4 cut(s)	141, 258, 391, 518
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	2 cut(s)	295, 420
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	98, 184
Hin6I	GCGC	2 cut(s)	293, 418
HinP1I	GCGC	2 cut(s)	293, 418
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	14, 100, 279
HpaII	CCGG	4 cut(s)	141, 258, 391, 518
HphI	GGTGA	2 cut(s)	18, 215
Hpy166II	GTNNAC	2 cut(s)	55, 64
Hpy188I	TCNGA	3 cut(s)	19, 105, 312
Hpy188III	TCNNGA	5 cut(s)	141, 252, 341, 518, 628
Hpy8I	GTNNAC	2 cut(s)	55, 64
HpyAV	CCTTC	6 cut(s)	194, 478, 528, 543, 558, 585
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	4, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 449
HpyF3I	CTNAG	2 cut(s)	309, 414
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	98, 184
HspAI	GCGC	2 cut(s)	293, 418
Kpn2I	TCCGGA	2 cut(s)	140, 517
Kzo9I	GATC	2 cut(s)	429, 624
LmnI	GCTCC	2 cut(s)	143, 343
LpnPI	CCDG	8 cut(s)	27, 60, 154, 271, 326, 404, 531, 595
Lsp1109I	GCAGC	6 cut(s)	16, 355, 377, 461, 520, 523
LweI	GCATC	5 cut(s)	54, 257, 400, 523, 532
MaeIII	GTNAC	2 cut(s)	379, 634
MalI	GATC	2 cut(s)	431, 626
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	2 cut(s)	429, 624
MboII	GAAGA	6 cut(s)	209, 310, 329, 398, 509, 533
MhlI	GDGCHC	1 cut(s)	348
MroI	TCCGGA	2 cut(s)	140, 517
MspA1I	CMGCKG	2 cut(s)	74, 368
MspI	CCGG	4 cut(s)	141, 258, 391, 518
Mva1269I	GAATGC	1 cut(s)	190
MvnI	CGCG	2 cut(s)	295, 420
MwoI	GCNNNNNNNGC	2 cut(s)	185, 449
NdeII	GATC	2 cut(s)	429, 624
NlaIII	CATG	2 cut(s)	98, 184
NlaIV	GGNNCC	5 cut(s)	90, 139, 219, 355, 614
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	379, 634
NspI	RCATGY	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	307
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	14, 100, 279
PflFI	GACNNNGTC	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	8 cut(s)	6, 328, 367, 370, 451, 480, 510, 513
PpuMI	RGGWCCY	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	5 cut(s)	90, 139, 219, 355, 614
PspPI	GGNCC	3 cut(s)	260, 353, 613
PspPPI	RGGWCCY	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	227, 461
RsaNI	GTAC	2 cut(s)	226, 460
SacI	GAGCTC	1 cut(s)	348
SatI	GCNGC	8 cut(s)	5, 327, 366, 369, 450, 479, 509, 512
Sau3AI	GATC	2 cut(s)	429, 624
Sau96I	GGNCC	3 cut(s)	260, 353, 613
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	5 cut(s)	54, 257, 400, 523, 532
SfcI	CTRYAG	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	353, 613
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	8 cut(s)	72, 92, 263, 295, 326, 455, 479, 545
SstI	GAGCTC	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	9, 251, 267, 606, 645
TauI	GCSGC	2 cut(s)	329, 481
TfiI	GAWTC	3 cut(s)	14, 100, 279
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	379, 634
TseI	GCWGC	6 cut(s)	4, 365, 368, 449, 508, 511
Tsp45I	GTSAC	2 cut(s)	379, 634
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	432
Tth111I	GACNNNGTC	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	353, 613
XceI	RCATGY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.