pycom11g10790

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001754
Physical Location & Seq
Forward (+)
9186017 .. 9188429
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10790.2

Sequence Viewer

Length: 939 bp
ATGGCTTCACAGAAAGGTCATCACGGAGAAAGCAAAACAGAAGAAAAAATGGGAAACAAAGTGATGACGTTTGTGGTTCTGATGCTGGTGATGTGCTATGGAGTTTCAGTGGCGCTGGGGTACACTGGTGATCAGGATGAAGGTTGGAGGAGAGGGACGGAGGAGAAAGAAGATTGGAGGGAGGAGCAGGAAAGCGGTGGGAGGAGGAGGCCGGAAGAGGAGGAGGGGCATTATCCGGAATCGGGAGGGGAAGAATCGGAAGAAGGTTGGTTTTTGCTGCCACAGGCAAAGCCGGTAGTGAAAACTGCAGCAGGAGAAATGAGAGTGGTGATGAGTGCGCGCAGCAGGGTAGTTGATAAGCCCATGCATATTGGGTTTATTACAATGGAGCCTAAGTCTCTCTTTATTCCTCAGTATCTCGACTCCAATCTCATCCTCTTCGTCTGCAGAGGAGAAGTAAAGGTGGGATTGATCTACAAAGATGAATTGGGAGAGAGGAGATTGAAGACAGGGGATGTGTATAGAATTCCAGCTGGGTCTCCATTTTACTTGGTGAACGCTGGAGAGGGCCAGAGGGTTCACATCATTTGCAGCATTGACACATCTGAGAGTTTGGGAATGGGTTTGCAGTCCTTCTTCATTGGTGGAGGAAGCAACCCACAGTCTATTATTGCTGGATTTGACCGTGAAGTACTTGCAAATGCCTTCAATGTCACATCATCAGAACTAAGAGAGATGTTCACAAGTCAACAACAAGGTCCAATCGTCTTTGTGCCCGAATCTTATTCGCCAAGTGTCTGGTCAAAATTCCTCCAGCTGAAACAGCAAGACAGACTTCAAGAAATGAAGAGTATGTTTGACATCCAACAAGATCGATCACCAAGACAAATCAGAAACATGGTCATGGAGGAAGCTCTTGAACTCAGTTTTTGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

313

Amino Acids

35.36

Weight (kDa)

5.22

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 340
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 1 cut(s) 195
AcsI RAATTY 2 cut(s) 525, 806
AfaI GTAC 2 cut(s) 122, 693
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 4 cut(s) 505, 709, 839, 920
AluBI AGCT 3 cut(s) 533, 817, 914
AluI AGCT 3 cut(s) 533, 817, 914
Alw26I GTCTC 2 cut(s) 402, 543
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 2 cut(s) 209, 568
ApeKI GCWGC 4 cut(s) 277, 308, 342, 591
ApoI RAATTY 2 cut(s) 525, 806
AspLEI GCGC 4 cut(s) 115, 340, 342, 936
AspS9I GGNCC 2 cut(s) 568, 758
AsuHPI GGTGA 5 cut(s) 100, 140, 340, 565, 870
AvaII GGWCC 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 777
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 4 cut(s) 264, 320, 354, 603
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 402, 543
BfmI CTRYAG 2 cut(s) 306, 445
BfoI RGCGCY 2 cut(s) 116, 937
BisI GCNGC 4 cut(s) 278, 309, 343, 592
BlsI GCNGC 4 cut(s) 279, 310, 344, 593
BmcAI AGTACT 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 2 cut(s) 568, 758
BmiI GGNNCC 1 cut(s) 390
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 2 cut(s) 582, 797
Bsa29I ATCGAT 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 874
BseGI GGATG 4 cut(s) 142, 432, 520, 861
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 3 cut(s) 425, 597, 937
BseNI ACTGG 1 cut(s) 130
BsePI GCGCGC 1 cut(s) 338
BseRI GAGGAG 9 cut(s) 163, 176, 197, 217, 220, 233, 236, 465, 511
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 4 cut(s) 264, 320, 354, 603
BseYI CCCAGC 2 cut(s) 115, 533
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 211, 570
BshVI ATCGAT 1 cut(s) 874
BsiSI CCGG 3 cut(s) 212, 236, 293
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 402, 543
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 2 cut(s) 211, 570
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 777
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 4 cut(s) 130, 471, 871, 875
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 211, 570
BspCNI CTCAG 3 cut(s) 424, 598, 936
BspDI ATCGAT 1 cut(s) 874
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 2 cut(s) 310, 449
BspTNI GGTCTC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 292
BssHII GCGCGC 1 cut(s) 338
BssMI GATC 4 cut(s) 130, 471, 871, 875
Bst4CI ACNGT 2 cut(s) 663, 686
Bst6I CTCTTC 3 cut(s) 210, 443, 842
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 5 cut(s) 393, 411, 606, 728, 923
BstF5I GGATG 4 cut(s) 142, 432, 520, 861
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 2 cut(s) 116, 937
BstHHI GCGC 4 cut(s) 115, 340, 342, 936
BstKTI GATC 4 cut(s) 133, 474, 874, 878
BstMAI GTCTC 2 cut(s) 402, 543
BstMBI GATC 4 cut(s) 130, 471, 871, 875
BstMWI GCNNNNNNNGC 1 cut(s) 823
BstSFI CTRYAG 2 cut(s) 306, 445
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 264, 320, 354, 603
BstV2I GAAGAC 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 798
Bsu15I ATCGAT 1 cut(s) 874
BsuRI GGCC 2 cut(s) 211, 570
BsuTUI ATCGAT 1 cut(s) 874
BtsCI GGATG 4 cut(s) 142, 432, 520, 861
BtsIMutI CAGTG 2 cut(s) 114, 123
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 4 cut(s) 115, 340, 342, 936
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 568, 758
ClaI ATCGAT 1 cut(s) 874
Csp6I GTAC 2 cut(s) 121, 692
CviAII CATG 3 cut(s) 364, 898, 904
CviJI RGCY 9 cut(s) 5, 211, 292, 361, 391, 533, 570, 817, 914
CviKI_1 RGCY 9 cut(s) 5, 211, 292, 361, 391, 533, 570, 817, 914
CviQI GTAC 2 cut(s) 121, 692
DdeI CTNAG 5 cut(s) 393, 411, 606, 728, 923
DpnI GATC 4 cut(s) 132, 473, 873, 877
DpnII GATC 4 cut(s) 130, 471, 871, 875
Eam1104I CTCTTC 3 cut(s) 210, 443, 842
EarI CTCTTC 3 cut(s) 210, 443, 842
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 758
EcoRI GAATTC 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 369
FaeI CATG 3 cut(s) 367, 901, 907
FaiI YATR 7 cut(s) 99, 365, 369, 522, 854, 899, 905
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 819, 851
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 363, 897, 903
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 278, 309, 343, 592
FokI GGATG 4 cut(s) 149, 419, 527, 848
Fsp4HI GCNGC 4 cut(s) 278, 309, 343, 592
GlaI GCGC 4 cut(s) 114, 339, 341, 935
GluI GCNGC 4 cut(s) 278, 309, 343, 592
GsaI CCCAGC 2 cut(s) 119, 537
GsuI CTGGAG 2 cut(s) 582, 797
HaeII RGCGCY 2 cut(s) 116, 937
HaeIII GGCC 2 cut(s) 211, 570
HapII CCGG 3 cut(s) 212, 236, 293
HhaI GCGC 4 cut(s) 115, 340, 342, 936
Hin1II CATG 3 cut(s) 367, 901, 907
Hin6I GCGC 4 cut(s) 113, 338, 340, 934
HinP1I GCGC 4 cut(s) 113, 338, 340, 934
HincII GTYRAC 1 cut(s) 749
HindII GTYRAC 1 cut(s) 749
HinfI GANTC 4 cut(s) 239, 254, 422, 779
HpaII CCGG 3 cut(s) 212, 236, 293
HphI GGTGA 5 cut(s) 100, 140, 340, 565, 870
Hpy166II GTNNAC 5 cut(s) 123, 556, 580, 741, 749
Hpy188I TCNGA 5 cut(s) 81, 259, 607, 724, 893
Hpy188III TCNNGA 6 cut(s) 134, 236, 243, 419, 839, 917
Hpy8I GTNNAC 5 cut(s) 123, 556, 580, 741, 749
HpyAV CCTTC 4 cut(s) 134, 257, 643, 715
HpyCH4III ACNGT 2 cut(s) 663, 686
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 308, 367, 447, 591, 628, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 823
HpyF3I CTNAG 5 cut(s) 393, 411, 606, 728, 923
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 3 cut(s) 367, 901, 907
HspAI GCGC 4 cut(s) 113, 338, 340, 934
Kpn2I TCCGGA 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 130, 471, 871, 875
LmnI GCTCC 2 cut(s) 184, 388
Lsp1109I GCAGC 4 cut(s) 264, 320, 354, 603
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 712
MalI GATC 4 cut(s) 132, 473, 873, 877
MboI GATC 4 cut(s) 130, 471, 871, 875
MboII GAAGA 9 cut(s) 53, 182, 227, 263, 272, 430, 517, 628, 859
MhlI GDGCHC 1 cut(s) 777
MluCI AATT 3 cut(s) 485, 525, 806
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 125, 889
Mph1103I ATGCAT 1 cut(s) 369
MroI TCCGGA 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 533, 817
MspI CCGG 3 cut(s) 212, 236, 293
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 823
NdeII GATC 4 cut(s) 130, 471, 871, 875
NlaIII CATG 3 cut(s) 367, 901, 907
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 712
NsiI ATGCAT 1 cut(s) 369
PauI GCGCGC 1 cut(s) 338
PfeI GAWTC 3 cut(s) 239, 254, 779
PkrI GCNGC 4 cut(s) 279, 310, 344, 593
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PspFI CCCAGC 2 cut(s) 115, 533
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 568, 758
PstI CTGCAG 2 cut(s) 310, 449
PteI GCGCGC 1 cut(s) 338
PvuII CAGCTG 2 cut(s) 533, 817
RsaI GTAC 2 cut(s) 122, 693
RsaNI GTAC 2 cut(s) 121, 692
RseI CAYNNNNRTG 1 cut(s) 902
SatI GCNGC 4 cut(s) 278, 309, 343, 592
Sau3AI GATC 4 cut(s) 130, 471, 871, 875
Sau96I GGNCC 2 cut(s) 568, 758
ScaI AGTACT 1 cut(s) 693
SchI GAGTC 1 cut(s) 416
SduI GDGCHC 1 cut(s) 777
SetI ASST 9 cut(s) 19, 71, 145, 268, 465, 535, 760, 819, 916
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 2 cut(s) 306, 445
SinI GGWCC 1 cut(s) 758
SmiMI CAYNNNNRTG 1 cut(s) 902
Sse9I AATT 3 cut(s) 485, 525, 806
SsiI CCGC 1 cut(s) 195
TaaI ACNGT 2 cut(s) 663, 686
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 420, 874
TasI AATT 3 cut(s) 485, 525, 806
TatI WGTACW 1 cut(s) 691
TfiI GAWTC 3 cut(s) 239, 254, 779
TscAI CASTG 2 cut(s) 114, 130
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 4 cut(s) 277, 308, 342, 591
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 4 cut(s) 153, 498, 628, 860
TspGWI ACGGA 2 cut(s) 39, 173
TspRI CASTG 2 cut(s) 114, 130
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 2 cut(s) 525, 806
ZrmI AGTACT 1 cut(s) 693
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.