Rmu_co8403353.1_g000001

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8403353.1
OG0001754
Physical Location & Seq
Reverse (-)
118 .. 805
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8403353.1_g000001.1.cds

Sequence Viewer

Length: 528 bp
atggtgagcgtcctggttcttgcacttgtgatgtgctttggagtcatggcaatggctatgagcttcgatcacgaagacgaggactggcgaagggatcatagggaagaagagtgggaagggcacagaagacatcaccattggttccttttgcaacgatctagactactgctgagaactgaagctggggaaatgagggtggtgaggagtgtaggtcagagaatggttgatagacatataaatgttgggtttctctccatggaacccaactctcttttcatccctcagtaccttgatgccagcgtggtcctctttgtccacacaggtcaagcaaatgtgggattggtaagccaacatgaactcggagagaggcaattgaaggctggggatttgtacagaatcccagctggttcaacattttacttgcaaaatgttggggagggccagagacttgagctcattctcagcattgacacatctgatagtttaagaatgggtactttggaggtacctacaccaatcatttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

175

Amino Acids

20.07

Weight (kDa)

5.82

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 505
AclWI GGATC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 4 cut(s) 287, 392, 496, 507
AgsI TTSAA 2 cut(s) 376, 411
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 4 cut(s) 63, 182, 404, 454
AluI AGCT 4 cut(s) 63, 182, 404, 454
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 1 cut(s) 102
AoxI GGCC 1 cut(s) 439
Asp718I GGTACC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 304, 439
AsuHPI GGTGA 3 cut(s) 16, 125, 211
AvaII GGWCC 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 81, 133
Bbv12I GWGCWC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 304, 439
BmiI GGNNCC 3 cut(s) 143, 261, 507
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 81, 133
BpuEI CTTGAG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 3 cut(s) 161, 296, 475
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 123
BseYI CCCAGC 3 cut(s) 182, 380, 400
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 439
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 123, 456
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 3 cut(s) 67, 94, 155
Bsp19I CCATGG 1 cut(s) 255
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 3 cut(s) 162, 295, 474
BspLI GGNNCC 3 cut(s) 143, 261, 507
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 67, 94, 155
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 170, 282, 461
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 3 cut(s) 70, 97, 158
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 3 cut(s) 67, 94, 155
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 123
BstV2I GAAGAC 2 cut(s) 81, 133
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 304, 439
Csp6I GTAC 4 cut(s) 286, 391, 495, 506
CviAII CATG 3 cut(s) 46, 256, 353
CviJI RGCY 8 cut(s) 56, 63, 182, 348, 380, 404, 441, 454
CviKI_1 RGCY 8 cut(s) 56, 63, 182, 348, 380, 404, 441, 454
CviQI GTAC 4 cut(s) 286, 391, 495, 506
DdeI CTNAG 3 cut(s) 170, 282, 461
DpnI GATC 3 cut(s) 69, 96, 157
DpnII GATC 3 cut(s) 67, 94, 155
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 49, 259, 356
FaiI YATR 7 cut(s) 47, 59, 99, 234, 236, 257, 354
FatI CATG 3 cut(s) 45, 255, 352
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 456
FspBI CTAG 1 cut(s) 159
GsaI CCCAGC 3 cut(s) 186, 384, 404
HaeIII GGCC 1 cut(s) 441
Hin1II CATG 3 cut(s) 49, 259, 356
HinfI GANTC 2 cut(s) 42, 396
HphI GGTGA 3 cut(s) 16, 125, 211
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 216, 362, 478
Hpy188III TCNNGA 2 cut(s) 71, 159
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 84, 110, 370
HpyCH4V TGCA 3 cut(s) 23, 151, 424
HpyF3I CTNAG 3 cut(s) 170, 282, 461
Hsp92II CATG 3 cut(s) 49, 259, 356
KpnI GGTACC 1 cut(s) 509
Kzo9I GATC 3 cut(s) 67, 94, 155
LpnPI CCDG 9 cut(s) 26, 70, 168, 306, 310, 366, 390, 414, 455
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 159
MalI GATC 3 cut(s) 69, 96, 157
MboI GATC 3 cut(s) 67, 94, 155
MboII GAAGA 4 cut(s) 86, 116, 119, 138
MfeI CAATTG 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 123, 456
MluCI AATT 1 cut(s) 371
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 8 cut(s) 73, 186, 195, 291, 317, 360, 430, 496
MseI TTAA 2 cut(s) 485, 526
MslI CAYNNNNRTG 2 cut(s) 50, 237
MspA1I CMGCKG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 67, 94, 155
NlaIII CATG 3 cut(s) 49, 259, 356
NlaIV GGNNCC 3 cut(s) 143, 261, 507
PfeI GAWTC 1 cut(s) 396
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 3 cut(s) 182, 380, 400
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 143, 261, 507
PspPI GGNCC 2 cut(s) 304, 439
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 4 cut(s) 287, 392, 496, 507
RsaNI GTAC 4 cut(s) 286, 391, 495, 506
RseI CAYNNNNRTG 2 cut(s) 50, 237
SacI GAGCTC 1 cut(s) 456
SaqAI TTAA 2 cut(s) 485, 526
Sau3AI GATC 3 cut(s) 67, 94, 155
Sau96I GGNCC 2 cut(s) 304, 439
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 123, 456
SetI ASST 9 cut(s) 65, 184, 214, 291, 325, 406, 456, 507, 511
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 2 cut(s) 50, 237
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 255
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 371
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 2 cut(s) 485, 526
Tru9I TTAA 2 cut(s) 485, 526
TspDTI ATGAA 2 cut(s) 265, 369
VpaK11BI GGWCC 1 cut(s) 304
XbaI TCTAGA 1 cut(s) 158
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.