Rmu_sc0034083.1_g000001

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034083.1
OG0001754
Physical Location & Seq
Reverse (-)
1 .. 1165
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034083.1_g000001.1.cds

Sequence Viewer

Length: 600 bp
atgggaaagaaagtgatcgtaagcgtcctagttcttgcacttgtgatgtgctttggagtcatggcaatggctatgagcttcgatcacgaagacgaggactggggatgggatcagagagaagaagagtgggaagggcacaaagggcatcgccattggttccttttgcaacgatctagactactgctgagaactgaagctggggaaatgagggtggtgaggagtgtaggtcggagaatggtcaatagacatataaatgttgggtttctctccatgaaacccaactctcttttcatccctcagtaccttgactccagcgtggtcctctttgtccacacagggcaagcaaatgtgggactagtgcaccgacatgaactcggagagaggcaattaaaggctggggatttgtacagaatcccagctggttcaacattttacttgcagaatgttggggagggccagagacttgagctcattctcagcattgacacatctgacagtttgagaatgggtactttggagaatttcttcattggtggaggaaactacccgaaatctgtcattgctgggtttgactctgaaatactcagaaatgcatttaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

200

Amino Acids

22.75

Weight (kDa)

6.71

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 3 cut(s) 302, 407, 511
AgsI TTSAA 1 cut(s) 426
AhlI ACTAGT 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 4 cut(s) 78, 197, 419, 469
AluI AGCT 4 cut(s) 78, 197, 419, 469
Alw21I GWGCWC 2 cut(s) 363, 471
Alw26I GTCTC 1 cut(s) 454
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 524
AspS9I GGNCC 2 cut(s) 319, 454
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 1 cut(s) 319
BaeGI GKGCMC 2 cut(s) 138, 363
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 363, 471
BccI CCATC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 454
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 3 cut(s) 29, 174, 356
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 319, 454
BmiI GGNNCC 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 485
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 293, 323
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 2 cut(s) 72, 558
BseGI GGATG 2 cut(s) 110, 291
BseMI GCAATG 2 cut(s) 72, 558
BseMII CTCAG 4 cut(s) 176, 311, 490, 598
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 232
BseSI GKGCMC 2 cut(s) 138, 363
BseYI CCCAGC 4 cut(s) 197, 395, 415, 563
BshFI GGCC 1 cut(s) 456
BsiHKAI GWGCWC 2 cut(s) 363, 471
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 456
Bsp1286I GDGCHC 3 cut(s) 138, 363, 471
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 4 cut(s) 15, 82, 109, 170
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 4 cut(s) 177, 310, 489, 597
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 117
BsrDI GCAATG 2 cut(s) 72, 558
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 104
BssMI GATC 4 cut(s) 15, 82, 109, 170
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 4 cut(s) 185, 297, 476, 584
BstF5I GGATG 2 cut(s) 110, 291
BstKTI GATC 4 cut(s) 18, 85, 112, 173
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 4 cut(s) 15, 82, 109, 170
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSLI GKGCMC 2 cut(s) 138, 363
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 2 cut(s) 110, 291
Cac8I GCNNGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 319, 454
CseI GACGC 1 cut(s) 13
Csp6I GTAC 3 cut(s) 301, 406, 510
CviAII CATG 3 cut(s) 61, 271, 368
CviJI RGCY 7 cut(s) 71, 78, 197, 395, 419, 456, 469
CviKI_1 RGCY 7 cut(s) 71, 78, 197, 395, 419, 456, 469
CviQI GTAC 3 cut(s) 301, 406, 510
DdeI CTNAG 4 cut(s) 185, 297, 476, 584
DpnI GATC 4 cut(s) 17, 84, 111, 172
DpnII GATC 4 cut(s) 15, 82, 109, 170
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 3 cut(s) 64, 274, 371
FaiI YATR 6 cut(s) 62, 74, 249, 251, 272, 369
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 60, 270, 367
FokI GGATG 2 cut(s) 117, 278
FriOI GRGCYC 1 cut(s) 471
FspBI CTAG 3 cut(s) 29, 174, 356
GsaI CCCAGC 4 cut(s) 201, 399, 419, 567
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 1 cut(s) 456
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 64, 274, 371
HinfI GANTC 4 cut(s) 57, 308, 411, 572
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 331, 361
Hpy188I TCNGA 6 cut(s) 114, 231, 377, 493, 577, 587
Hpy188III TCNNGA 2 cut(s) 86, 174
Hpy8I GTNNAC 2 cut(s) 331, 361
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 38, 166, 361, 439, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 4 cut(s) 185, 297, 476, 584
Hsp92II CATG 3 cut(s) 64, 274, 371
Kzo9I GATC 4 cut(s) 15, 82, 109, 170
LpnPI CCDG 9 cut(s) 85, 183, 321, 325, 381, 405, 429, 470, 549
LweI GCATC 1 cut(s) 154
MaeI CTAG 3 cut(s) 29, 174, 356
MalI GATC 4 cut(s) 17, 84, 111, 172
MboI GATC 4 cut(s) 15, 82, 109, 170
MboII GAAGA 4 cut(s) 101, 131, 134, 517
MhlI GDGCHC 3 cut(s) 138, 363, 471
MluCI AATT 2 cut(s) 386, 520
MlyI GAGTC 3 cut(s) 66, 302, 566
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 8 cut(s) 88, 201, 210, 306, 332, 375, 445, 530
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 2 cut(s) 389, 597
MslI CAYNNNNRTG 3 cut(s) 65, 252, 366
MspA1I CMGCKG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 4 cut(s) 15, 82, 109, 170
NlaIII CATG 3 cut(s) 64, 274, 371
NlaIV GGNNCC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 411
PleI GAGTC 3 cut(s) 65, 302, 566
PpsI GAGTC 3 cut(s) 65, 302, 566
Psp124BI GAGCTC 1 cut(s) 471
PspFI CCCAGC 4 cut(s) 197, 395, 415, 563
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 319, 454
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 3 cut(s) 302, 407, 511
RsaNI GTAC 3 cut(s) 301, 406, 510
RseI CAYNNNNRTG 3 cut(s) 65, 252, 366
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 389, 597
Sau3AI GATC 4 cut(s) 15, 82, 109, 170
Sau96I GGNCC 2 cut(s) 319, 454
SchI GAGTC 3 cut(s) 66, 302, 566
SduI GDGCHC 3 cut(s) 138, 363, 471
SetI ASST 6 cut(s) 80, 199, 229, 306, 421, 471
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 3 cut(s) 65, 252, 366
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 2 cut(s) 386, 520
SspMI CTAG 3 cut(s) 29, 174, 356
SstI GAGCTC 1 cut(s) 471
TaaI ACNGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 386, 520
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 2 cut(s) 389, 597
Tru9I TTAA 2 cut(s) 389, 597
TspDTI ATGAA 4 cut(s) 280, 287, 384, 517
VneI GTGCAC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 3 cut(s) 29, 174, 356
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.